Microbacterium phage MuffinTheCat
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| Detailed Information for Phage MuffinTheCat | |
| Discovery Information | |
| Isolation Host | Microbacterium testaceum NRRL B-24232 |
| Former names | Jeffrey |
| Found By | Darcy Reimer |
| Year Found | 2019 |
| Location Found | Nyack, NY United States of America |
| Finding Institution | Alliance University (formerly Nyack College) |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 28°C |
| GPS Coordinates | 41.088212 N, 73.930983 W Map |
| Discovery Notes | Found in a mostly dried up stream, in a more damp area |
| Naming Notes | Jeffrey is a good name for a phage, picked randomly. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 12, 2019 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 824 |
| Genome length (bp) | 15494 |
| Character of genome ends | Covalent Terminal Protein |
| End Determination Notes | This phage shows similarity to other Tectiviridae, which generally have covalently-bound terminal proteins. In addition, the sequencing reads end at a specific base without any circularizing reads, and the genome has ~113 bp inverted terminal repeats. Taken together, these lines of evidence point to this phage likely having covalently-bound terminal proteins. |
| GC Content | 55.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | GE |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to View |
| Annotating Institution | Alliance University (formerly Nyack College) |
| Annotation Status | In GenBank |
| Number of Genes | 32 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewMuffinTheCat_1 MuffinTheCat_2 MuffinTheCat_3 MuffinTheCat_4 MuffinTheCat_5 MuffinTheCat_6 MuffinTheCat_7 MuffinTheCat_8 MuffinTheCat_9 MuffinTheCat_10 MuffinTheCat_11 MuffinTheCat_12 MuffinTheCat_13 MuffinTheCat_14 MuffinTheCat_15 MuffinTheCat_16 MuffinTheCat_17 MuffinTheCat_18 MuffinTheCat_19 MuffinTheCat_20 MuffinTheCat_21 MuffinTheCat_22 MuffinTheCat_23 MuffinTheCat_24 MuffinTheCat_25 MuffinTheCat_26 MuffinTheCat_27 MuffinTheCat_28 MuffinTheCat_29 MuffinTheCat_30 MuffinTheCat_31 MuffinTheCat_32 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MT952848 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 97 |
| Pitt Freezer Box Grid# | B10 |
| Available Files | |
| EM Picture | Download |
| GenBank File for Phamerator | Download |