Gordonia phage Nadeem
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Detailed Information for Phage Nadeem
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMohammed Nadeem
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.442 N, 79.956 W Map
Discovery NotesDry soil. Newly planted grass was growing in the area. Soil collected on a sunny day. Warm temperature (64 degrees Fahrenheit).
Naming NotesLast name. Seemed like a good idea.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 28, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2633
Genome length (bp)49897
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGCCGCGGTA
GC Content67.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDI
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionIndian River State College
Annotation StatusIn GenBank
Plaque NotesPlaque morphology is identical. Small, circular plaques formed. More or less evenly spaced.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Nadeem_1

Nadeem_2

Nadeem_3

Nadeem_4

Nadeem_5
(terminase small subunit)

Nadeem_6
(terminase large subunit)

Nadeem_7
(portal protein)

Nadeem_8
(capsid maturation protease)

Nadeem_9
(scaffolding protein)

Nadeem_10
(major capsid protein)

Nadeem_11
(head-to-tail connector protein)

Nadeem_12
(head-to-tail connector protein)

Nadeem_13
(head-to-tail connector protein)

Nadeem_14
(head-to-tail connector protein)

Nadeem_15
(head-to-tail connector protein)

Nadeem_16
(major tail protein)

Nadeem_17

Nadeem_18
(tail assembly chaperone)

Nadeem_19
(tail assembly chaperone)

Nadeem_20
(tape measure protein)

Nadeem_21
(minor tail protein)

Nadeem_22
(minor tail protein)

Nadeem_23
(minor tail protein)

Nadeem_24
(minor tail protein)

Nadeem_25
(minor tail protein)

Nadeem_26

Nadeem_27

Nadeem_28

Nadeem_29
(lysin A, L-Ala-D-Glu peptidase domain)

Nadeem_30
(lysin A, glycosyl hydrolase domain)

Nadeem_31

Nadeem_32
(membrane protein)

Nadeem_33

Nadeem_34

Nadeem_35

Nadeem_36

Nadeem_37

Nadeem_38

Nadeem_39
(integrase)

Nadeem_40
(immunity repressor)

Nadeem_41
(helix-turn-helix DNA binding domain protein)

Nadeem_42
(helix-turn-helix DNA binding domain protein)

Nadeem_43

Nadeem_44

Nadeem_45

Nadeem_46

Nadeem_47
(exonuclease)

Nadeem_48

Nadeem_49

Nadeem_50

Nadeem_51

Nadeem_52

Nadeem_53

Nadeem_54

Nadeem_55

Nadeem_56

Nadeem_57

Nadeem_58

Nadeem_59

Nadeem_60

Nadeem_61

Nadeem_62

Nadeem_63
(metallophosphoesterase)

Nadeem_64

Nadeem_65
(hydrolase)

Nadeem_66
(DNA methylase)

Nadeem_67

Nadeem_68

Nadeem_69
(DNA primase)

Nadeem_70
(endonuclease VII)

Nadeem_71

Nadeem_72
(MerR-like HTH DNA binding protein)

Nadeem_73
(HNH endonuclease)

Nadeem_74

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH399781
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.67*10^10
Date of SEA Lysate Titering Feb 22, 2016
Pitt Freezer Box# 3
Pitt Freezer Box Grid# E11
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload