Gordonia phage PhinkBoden
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Detailed Information for Phage PhinkBoden
Discovery Information
Isolation HostGordonia terrae 3612
Found ByStephanie Fink and Michelle Boden
Year Found2019
Location FoundColumbus, OH USA
Finding InstitutionThe Ohio State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature30°C
GPS Coordinates40.016 N, 83.0224 W Map
Discovery Notessoil taken from along the bank of the Olentangy River
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 30, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage1180
Genome length (bp)92817
Character of genome endsCircularly Permuted
GC Content61.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCQ
SubclusterCQ1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionThe Ohio State University
Annotation StatusIn GenBank
Plaque Notessmall plaques with halos
MorphotypeSiphoviridae
Number of Genes176
Number of tRNAs6
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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PhinkBoden_1

PhinkBoden_2

PhinkBoden_3

PhinkBoden_4

PhinkBoden_5

PhinkBoden_6

PhinkBoden_7

PhinkBoden_8

PhinkBoden_9

PhinkBoden_10

PhinkBoden_11

PhinkBoden_12

PhinkBoden_13

PhinkBoden_14

PhinkBoden_15
(HNH endonuclease)

PhinkBoden_16

PhinkBoden_17

PhinkBoden_18

PhinkBoden_19

PhinkBoden_20

PhinkBoden_21 — tRNA
(tRNA-?(Val|Arg)(gacg))

PhinkBoden_22 — tRNA
(tRNA-Trp (cca))

PhinkBoden_23 — tRNA
(tRNA-Tyr (gta))

PhinkBoden_24 — tRNA
(tRNA-Ser (cga))

PhinkBoden_25 — tRNA
(tRNA-Ser (gct))

PhinkBoden_26
(HNH endonuclease)

PhinkBoden_27

PhinkBoden_28 — tRNA
(tRNA-Lys (ctt))

PhinkBoden_29
(terminase small subunit)

PhinkBoden_30
(terminase large subunit)

PhinkBoden_31
(portal protein)

PhinkBoden_32
(minor capsid protein)

PhinkBoden_33
(scaffolding protein)

PhinkBoden_34
(capsid decoration protein)

PhinkBoden_35
(major capsid protein)

PhinkBoden_36

PhinkBoden_37

PhinkBoden_38

PhinkBoden_39

PhinkBoden_40
(tail terminator)

PhinkBoden_41
(holliday junction revolvase)

PhinkBoden_42
(major tail protein)

PhinkBoden_43

PhinkBoden_44
(tail assembly chaperone)

PhinkBoden_45
(tail assembly chaperone)

PhinkBoden_46
(tape measure protein)

PhinkBoden_47
(minor tail protein)

PhinkBoden_48
(minor tail protein)

PhinkBoden_49
(endolysin, protease C39 domain)

PhinkBoden_50
(endolysin, L-Ala-D-Glu peptidase domain)

PhinkBoden_51
(holin)

PhinkBoden_52

PhinkBoden_53

PhinkBoden_54

PhinkBoden_55
(minor tail protein)

PhinkBoden_56
(minor tail protein)

PhinkBoden_57
(minor tail protein)

PhinkBoden_58
(minor tail protein)

PhinkBoden_59

PhinkBoden_60
(Lsr2-like DNA bridging protein)

PhinkBoden_61

PhinkBoden_62

PhinkBoden_63
(exonuclease VII, large subunit)

PhinkBoden_64
(exonuclease VII, small subunit)

PhinkBoden_65

PhinkBoden_66

PhinkBoden_67

PhinkBoden_68

PhinkBoden_69
(metallophosphatase)

PhinkBoden_70

PhinkBoden_71

PhinkBoden_72
(RtcB-like RNA ligase)

PhinkBoden_73

PhinkBoden_74

PhinkBoden_75

PhinkBoden_76

PhinkBoden_77

PhinkBoden_78

PhinkBoden_79

PhinkBoden_80

PhinkBoden_81

PhinkBoden_82

PhinkBoden_83
(tyrosine integrase)

PhinkBoden_84

PhinkBoden_85
(immunity repressor)

PhinkBoden_86

PhinkBoden_87
(RecE-like exonuclease)

PhinkBoden_88

PhinkBoden_89

PhinkBoden_90
(RecT-like DNA pairing protein)

PhinkBoden_91
(ThyX-like thymidylate synthase)

PhinkBoden_92

PhinkBoden_93

PhinkBoden_94

PhinkBoden_95

PhinkBoden_96

PhinkBoden_97
(helix-turn-helix DNA binding protein)

PhinkBoden_98

PhinkBoden_99

PhinkBoden_100

PhinkBoden_101
(helix-turn-helix DNA binding protein)

PhinkBoden_102
(DNA binding protein)

PhinkBoden_103
(helicase loader)

PhinkBoden_104

PhinkBoden_105
(MazG-like nucleotide pyrophosphohydrolase)

PhinkBoden_106

PhinkBoden_107

PhinkBoden_108
(PTPc tyrosine phosphatase)

PhinkBoden_109

PhinkBoden_110

PhinkBoden_111

PhinkBoden_112

PhinkBoden_113

PhinkBoden_114

PhinkBoden_115

PhinkBoden_116

PhinkBoden_117

PhinkBoden_118

PhinkBoden_119

PhinkBoden_120

PhinkBoden_121

PhinkBoden_122
(DNA primase/helicase)

PhinkBoden_123

PhinkBoden_124

PhinkBoden_125
(thioredoxin)

PhinkBoden_126
(SSB protein)

PhinkBoden_127

PhinkBoden_128
(WhiB family transcription factor)

PhinkBoden_129

PhinkBoden_130

PhinkBoden_131

PhinkBoden_132

PhinkBoden_133
(holliday junction revolvase)

PhinkBoden_134

PhinkBoden_135

PhinkBoden_136
(nucleotidyltransferase)

PhinkBoden_137

PhinkBoden_138
(oxidoreductase)

PhinkBoden_139

PhinkBoden_140

PhinkBoden_141

PhinkBoden_142
(5' nucleotidase)

PhinkBoden_143

PhinkBoden_144
(deoxycytidylate deaminase)

PhinkBoden_145

PhinkBoden_146
(serine hydrolase)

PhinkBoden_147

PhinkBoden_148

PhinkBoden_149

PhinkBoden_150
(helix-turn-helix DNA binding protein)

PhinkBoden_151

PhinkBoden_152

PhinkBoden_153

PhinkBoden_154

PhinkBoden_155

PhinkBoden_156

PhinkBoden_157

PhinkBoden_158

PhinkBoden_159

PhinkBoden_160

PhinkBoden_161

PhinkBoden_162

PhinkBoden_163

PhinkBoden_164

PhinkBoden_165

PhinkBoden_166

PhinkBoden_167

PhinkBoden_168

PhinkBoden_169

PhinkBoden_170

PhinkBoden_171

PhinkBoden_172

PhinkBoden_173
(glycosylase)

PhinkBoden_174

PhinkBoden_175

PhinkBoden_176

PhinkBoden_177

PhinkBoden_178

PhinkBoden_179

PhinkBoden_180

PhinkBoden_181

PhinkBoden_182

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR159663
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 100
Pitt Freezer Box Grid# B11
Available Files
GenBank File for PhameratorDownload