Gordonia phage RayTheFireFly
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Detailed Information for Phage RayTheFireFly
Discovery Information
Isolation HostGordonia terrae 3612
Found ByReena A., Sydney L., Lisa S., Arpitha U.
Year Found2020
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.4443 N, 79.9532 W Map
Discovery NotesFound by Reena Agarwal, Sydney Lennon, Lisa Sipe, Arpitha Udupa; Soil from University of Pittsburgh Cathedral Lawn
Naming NotesNamed after the firefly Ray or Raymond from the Disney movie "The Princess and the Frog", one of our favorite characters
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 28, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage425
Genome length (bp)45754
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCCCGCGGTA
GC Content66.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDB
Subcluster--
Cluster Life CycleTemperate
Lysogeny NotesHalo morphology, but mesas formed on spot titer experiment.
Other Cluster Members
Annotating InstitutionSUNY Old Westbury
Annotation StatusIn GenBank
Plaque NotesHalo morphology, appearing as a dark opaque small circular clearing within a larger more cloudy circular clearing
MorphotypeSiphoviridae
Number of Genes73
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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RayTheFireFly_1
(terminase small subunit)

RayTheFireFly_2
(terminase large subunit)

RayTheFireFly_3
(portal protein)

RayTheFireFly_4
(ASCE ATPase)

RayTheFireFly_5
(capsid maturation protease)

RayTheFireFly_6
(scaffolding protein)

RayTheFireFly_7
(major capsid protein)

RayTheFireFly_8

RayTheFireFly_9
(head-to-tail adaptor)

RayTheFireFly_10
(head-to-tail stopper)

RayTheFireFly_11

RayTheFireFly_12
(tail terminator)

RayTheFireFly_13
(major tail protein)

RayTheFireFly_14

RayTheFireFly_15
(tail assembly chaperone)

RayTheFireFly_16
(tail assembly chaperone)

RayTheFireFly_17
(tape measure protein)

RayTheFireFly_18
(minor tail protein)

RayTheFireFly_19
(minor tail protein)

RayTheFireFly_20

RayTheFireFly_21
(lysin A, protease C39 domain)

RayTheFireFly_22
(lysin A, glycosyl hydrolase domain)

RayTheFireFly_23
(holin)

RayTheFireFly_24

RayTheFireFly_25

RayTheFireFly_26

RayTheFireFly_27
(lysin B)

RayTheFireFly_28
(minor tail protein)

RayTheFireFly_29

RayTheFireFly_30

RayTheFireFly_31

RayTheFireFly_32
(minor tail protein)

RayTheFireFly_33
(toxin)

RayTheFireFly_34

RayTheFireFly_35

RayTheFireFly_36

RayTheFireFly_37

RayTheFireFly_38
(helix-turn-helix DNA binding domain protein)

RayTheFireFly_39

RayTheFireFly_40

RayTheFireFly_41

RayTheFireFly_42
(helix-turn-helix DNA binding domain protein)

RayTheFireFly_43

RayTheFireFly_44
(helix-turn-helix DNA binding protein)

RayTheFireFly_45
(tyrosine integrase)

RayTheFireFly_46

RayTheFireFly_47
(immunity repressor)

RayTheFireFly_48
(helix-turn-helix DNA binding domain protein)

RayTheFireFly_49

RayTheFireFly_50
(ParB-like nuclease domain protein)

RayTheFireFly_51

RayTheFireFly_52

RayTheFireFly_53

RayTheFireFly_54

RayTheFireFly_55

RayTheFireFly_56

RayTheFireFly_57

RayTheFireFly_58
(ParB-like nuclease domain protein)

RayTheFireFly_59

RayTheFireFly_60
(DNA polymerase III sliding clamp beta)

RayTheFireFly_61
(helix-turn-helix DNA binding domain protein)

RayTheFireFly_62

RayTheFireFly_63

RayTheFireFly_64
(nucleotidyl transferase)

RayTheFireFly_65

RayTheFireFly_66

RayTheFireFly_67

RayTheFireFly_68

RayTheFireFly_69

RayTheFireFly_70

RayTheFireFly_71
(DNA binding protein)

RayTheFireFly_72
(helix-turn-helix DNA binding domain protein)

RayTheFireFly_73
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR725489
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 126
Pitt Freezer Box Grid# B9
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload