Detailed Information for Phage Rie18 |
Discovery Information |
Isolation Host | Microbacterium foliorum NRRL B-24224 |
Found By | Joseph Enwereji and Samantha Young |
Year Found | 2019 |
Location Found | Aba, Nigeria |
Finding Institution | University of the Sciences (now St. Joseph's Univ) |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 21°C |
GPS Coordinates | 5.121797 N, 7.343372 E Map |
Discovery Notes | The soil sample was collected from the village of Umule Ovungwn, in Aba, Abia State, Nigeria. The depth of the soil the sample was taken from was 3 cm deep in dry soil about 3.048 meters from a building. |
Naming Notes | We named it Rie18 because 'rie' directly translates to eat in Igbo. Igbo is the language spoken in the village of Umule Ovungwn. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Dec 10, 2019 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 2860 |
Genome length (bp) | 56435 |
Character of genome ends | Circularly Permuted |
GC Content | 63.9% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | EF |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | North Carolina A&T State University |
Annotation Status | In GenBank |
Plaque Notes | It appears to be lytic, because of the clear edges around the plaques. The plaques have a diameter of about 1 mm. |
Morphotype | Siphoviridae |
Number of Genes | 83 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MT522003 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
SEA Lysate Titer |
2.1 x 10^18 |
Pitt Freezer Box# |
98 |
Pitt Freezer Box Grid# |
D11 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |