Microbacterium phage RikSengupta
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Detailed Information for Phage RikSengupta
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByAbhirup Das
Year Found2022
Location FoundAmherst, MA United States of America
Finding InstitutionIllinois Wesleyan University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates42.37595 N, 72.504425 W Map
Discovery NotesThe soil sample was taken from underneath a rock, beneath a shrub, in a backyard covered in dense organic material. The soil was covered with semi-decomposed leaves, and twigs. There were colonies of ants nearby. The area also had several other insects, including crickets, and spiders. The soil was dry and dark brown in color. The ambient temperature was approximately 29°C.
Naming NotesThe name of the phage is after a friend who helped me document the collection of the soil sample from which I was able to isolate the phage.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 4, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage723
Genome length (bp)57187
Character of genome endsCircularly Permuted
GC Content62.7%
Sequencing NotesAround 15% of the reads from this sample were from a novel Cluster EE phage which was likely a contaminant.
Fasta file available?Yes: Download fasta file
Characterization
ClusterEF
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionIllinois Wesleyan University
Annotation StatusBeing Annotated (Expected completion by 5/1/2023)
Plaque NotesPlaques are almost uniformly tiny, and always clear.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload