| Detailed Information for Phage SJReid |
| Discovery Information |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Hannah Kumar |
| Year Found | 2023 |
| Location Found | Montreal, Canada |
| Finding Institution | McGill University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 45.498889 N, 73.5825 W Map |
| Discovery Notes | This phage was discovered from a soil sample obtained on September 13, 2023 at 1:18 PM. The sample was found outside of an apartment building in a small front yard that had lots of weeds. It had rained earlier in the day, so the soil sample was slightly damp. |
| Naming Notes | I named this phage after my grandmother. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 2, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 391 |
| Genome length (bp) | 193007 |
| Character of genome ends | Direct Terminal Repeat |
| Direct Terminal Repeat Length | 20168 bp |
| End Determination Notes | At first, we thought Cluster FC phages had no defined ends and were circularly permuted, but as we sequenced more, it became clear that the genomes had a region of double coverage, which is characteristic of a direct terminal repeat. As with some other phages, the right end of the terminal repeat is well-defined, while the left end is less clear. |
| GC Content | 53.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | FC |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | McGill University |
| Annotation Status | Awaiting_QC |
| Plaque Notes | Plaques were clear and small. Some of them had a hazy ring or "halo" around the outside of them. |
| Morphotype | Siphoviridae |
| Number of Genes | 331 |
| Number of tRNAs | 27 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
183 |
| Pitt Freezer Box Grid# |
H9 |
| Available Files |
| EM Picture | Download |