Arthrobacter phage SJReid
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(A. sp. ATCC 21022)
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Detailed Information for Phage SJReid
Discovery Information
Isolation HostArthrobacter globiformis B-2979
Found ByHannah Kumar
Year Found2023
Location FoundMontreal, Canada
Finding InstitutionMcGill University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates45.498889 N, 73.5825 W Map
Discovery NotesThis phage was discovered from a soil sample obtained on September 13, 2023 at 1:18 PM. The sample was found outside of an apartment building in a small front yard that had lots of weeds. It had rained earlier in the day, so the soil sample was slightly damp.
Naming NotesI named this phage after my grandmother.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 2, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage391
Genome length (bp)193007
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length20168 bp
End Determination NotesAt first, we thought Cluster FC phages had no defined ends and were circularly permuted, but as we sequenced more, it became clear that the genomes had a region of double coverage, which is characteristic of a direct terminal repeat. As with some other phages, the right end of the terminal repeat is well-defined, while the left end is less clear.
GC Content53.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterFC
Subcluster--
Cluster Life CycleLytic
Other Cluster Members

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Atuin

Bloom

Chilliams

DunneganBoMo

Ellewin

GoldenEssence

KSunshine22

LeoJr

Mimi

Panchaali

Patbob

Phrampa

Racecar

ReginaGlobina

Rockabye

SJReid

Talia1610

WaddleDee
Annotating InstitutionMcGill University
Annotation StatusQC Complete
Plaque NotesPlaques were clear and small. Some of them had a hazy ring or "halo" around the outside of them.
MorphotypeSiphoviridae
Number of Genes325
Number of tRNAs29
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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SJReid_1

SJReid_2

SJReid_3

SJReid_4

SJReid_5
(ParB N-terminal-like domain)

SJReid_6

SJReid_7

SJReid_8

SJReid_9

SJReid_10

SJReid_11

SJReid_12

SJReid_13

SJReid_14

SJReid_15

SJReid_16

SJReid_17

SJReid_18

SJReid_19

SJReid_20

SJReid_21

SJReid_22

SJReid_23

SJReid_24

SJReid_25

SJReid_26

SJReid_27

SJReid_28

SJReid_29

SJReid_30

SJReid_31

SJReid_32

SJReid_33

SJReid_34

SJReid_35

SJReid_36

SJReid_37

SJReid_38

SJReid_39

SJReid_40
(SprT-like protease)

SJReid_41

SJReid_42

SJReid_43

SJReid_44

SJReid_45

SJReid_46

SJReid_47

SJReid_48

SJReid_49

SJReid_50

SJReid_51

SJReid_52
(peptidase)

SJReid_53

SJReid_54
(holin)

SJReid_55

SJReid_56

SJReid_57

SJReid_58

SJReid_59

SJReid_60

SJReid_61

SJReid_62

SJReid_63
(ADP-ribosyltransferase)

SJReid_64

SJReid_65

SJReid_66

SJReid_67

SJReid_68
(DNA ligase)

SJReid_69
(phosphoribosyl pyrophosphate transferase)

SJReid_70

SJReid_71

SJReid_72

SJReid_73
(nicotinate ribosyltransferase)

SJReid_74

SJReid_75
(helix-turn-helix DNA binding domain)

SJReid_76

SJReid_77

SJReid_78

SJReid_79
(portal protein)

SJReid_80

SJReid_81

SJReid_82

SJReid_83
(capsid maturation protease)

SJReid_84

SJReid_85

SJReid_86
(major tail protein)

SJReid_87
(head-to-tail adaptor)

SJReid_88

SJReid_89

SJReid_90
(minor capsid protein)

SJReid_91
(tail assembly chaperone)

SJReid_92

SJReid_93
(tape measure protein)

SJReid_94
(minor tail protein)

SJReid_95
(minor tail protein)

SJReid_96
(minor tail protein)

SJReid_97

SJReid_98

SJReid_99

SJReid_100

SJReid_101

SJReid_102

SJReid_103
(DNA polymerase I)

SJReid_104
(RuvC-like resolvase)

SJReid_105
(DNA helicase)

SJReid_106
(ThyX-like thymidylate synthase)

SJReid_107
(RecB-like exonuclease/helicase)

SJReid_108
(RecA-like DNA recombinase)

SJReid_109
(SSB protein)

SJReid_110
(MazG-like nucleotide pyrophosphohydrolase)

SJReid_111

SJReid_112
(NrdH-like glutaredoxin)

SJReid_113
(ribonucleotide reductase)

SJReid_114
(ribonucleotide reductase)

SJReid_115
(ribonucleotide reductase)

SJReid_116
(phosphatase)

SJReid_117

SJReid_118 — tRNA
(tRNA-Trp(cca))

SJReid_119 — tRNA
(tRNA-Pro(tgg))

SJReid_120 — tRNA
(tRNA-Gly(tcc))

SJReid_121 — tRNA
(tRNA-Thr(tgt))

SJReid_122 — tRNA
(tRNA-Phe(gaa))

SJReid_123 — tRNA
(tRNA-Gln(ttg))

SJReid_124

SJReid_125 — tRNA
(tRNA-Gln(ctg))

SJReid_126 — tRNA
(tRNA-Undet(nnn))

SJReid_127 — tRNA
(tRNA-Ile(gat))

SJReid_128

SJReid_129 — tRNA
(tRNA-Glu(ttc))

SJReid_130 — tRNA
(tRNA-Ser(gga))

SJReid_131 — tRNA
(tRNA-Val(tac))

SJReid_132 — tRNA
(tRNA-Leu(caa))

SJReid_133
(HNH endonuclease)

SJReid_134 — tRNA
(tRNA-Ile(tat))

SJReid_135 — tRNA
(tRNA-Arg(acg))

SJReid_136 — tRNA
(tRNA-Ser(gct))

SJReid_137

SJReid_138

SJReid_139

SJReid_140 — tRNA
(tRNA-Leu(tag))

SJReid_141 — tRNA
(tRNA-Arg(tct))

SJReid_142 — tRNA
(tRNA-Tyr(gta))

SJReid_143 — tRNA
(tRNA-Lys(ctt))

SJReid_144 — tRNA
(tRNA-Lys(ttt))

SJReid_145

SJReid_146

SJReid_147
(nuclease)

SJReid_148
(endolysin)

SJReid_149
(endolysin)

SJReid_150

SJReid_151
(DnaE-like DNA polymerase III (alpha))

SJReid_152

SJReid_153

SJReid_154 — tRNA
(tRNA-Met(cat))

SJReid_155 — tRNA
(tRNA-Asn(gtt))

SJReid_156 — tRNA
(tRNA-Ala(tgc))

SJReid_157

SJReid_158 — tRNA
(tRNA-Asp(gtc))

SJReid_159 — tRNA
(tRNA-His(gtg))

SJReid_160
(RNA ligase)

SJReid_161

SJReid_162

SJReid_163

SJReid_164
(UDP-glucose dehydrogenase)

SJReid_165

SJReid_166

SJReid_167
(RIIB-like protein)

SJReid_168

SJReid_169 — tRNA
(tRNA-Arg(cct))

SJReid_170 — tRNA
(tRNA-Thr(ggt))

SJReid_171 — tRNA
(tRNA-Cys(gca))

SJReid_172
(HNH endonuclease)

SJReid_173
(ParB N-terminal-like domain)

SJReid_174
(MRE11 double-strand break endo/exonuclease)

SJReid_175

SJReid_176

SJReid_177
(glycosyltransferase)

SJReid_178

SJReid_179

SJReid_180
(glycosyltransferase)

SJReid_181

SJReid_182
(RNA ligase)

SJReid_183

SJReid_184
(polynucleotide kinase)

SJReid_185

SJReid_186
(tRNA nucleotidyltransferase)

SJReid_187

SJReid_188

SJReid_189

SJReid_190

SJReid_191

SJReid_192

SJReid_193
(nucleotidyl transferase)

SJReid_194

SJReid_195
(AAA-ATPase)

SJReid_196

SJReid_197
(WhiB family transcription factor)

SJReid_198
(DNA helicase)

SJReid_199
(DNA primase)

SJReid_200

SJReid_201

SJReid_202

SJReid_203
(DNA primase/helicase)

SJReid_204

SJReid_205

SJReid_206

SJReid_207

SJReid_208

SJReid_209

SJReid_210

SJReid_211

SJReid_212

SJReid_213

SJReid_214
(terminase)

SJReid_215

SJReid_216

SJReid_217

SJReid_218

SJReid_219

SJReid_220

SJReid_221
(SprT-like protease)

SJReid_222

SJReid_223

SJReid_224

SJReid_225

SJReid_226

SJReid_227

SJReid_228

SJReid_229
(glycoside hydrolase)

SJReid_230

SJReid_231

SJReid_232

SJReid_233

SJReid_234

SJReid_235

SJReid_236

SJReid_237

SJReid_238

SJReid_239

SJReid_240

SJReid_241

SJReid_242

SJReid_243

SJReid_244

SJReid_245

SJReid_246

SJReid_247

SJReid_248

SJReid_249

SJReid_250

SJReid_251

SJReid_252

SJReid_253

SJReid_254

SJReid_255

SJReid_256

SJReid_257

SJReid_258

SJReid_259

SJReid_260

SJReid_261

SJReid_262

SJReid_263

SJReid_264

SJReid_265

SJReid_266

SJReid_267

SJReid_268

SJReid_269

SJReid_270

SJReid_271
(Holliday junction resolvase)

SJReid_272

SJReid_273

SJReid_274

SJReid_275

SJReid_276

SJReid_277

SJReid_278

SJReid_279

SJReid_280

SJReid_281

SJReid_282

SJReid_283

SJReid_284

SJReid_285

SJReid_286

SJReid_287

SJReid_288

SJReid_289

SJReid_290

SJReid_291

SJReid_292

SJReid_293

SJReid_294

SJReid_295

SJReid_296

SJReid_297

SJReid_298

SJReid_299

SJReid_300

SJReid_301

SJReid_302

SJReid_303

SJReid_304

SJReid_305

SJReid_306

SJReid_307

SJReid_308

SJReid_309

SJReid_310

SJReid_311

SJReid_312

SJReid_313

SJReid_314

SJReid_315

SJReid_316

SJReid_317

SJReid_318

SJReid_319

SJReid_320

SJReid_321

SJReid_322

SJReid_323

SJReid_324

SJReid_325

SJReid_326

SJReid_327

SJReid_328

SJReid_329

SJReid_330

SJReid_331

SJReid_332

SJReid_333

SJReid_334

SJReid_335

SJReid_336

SJReid_337

SJReid_338

SJReid_339

SJReid_340

SJReid_341

SJReid_342

SJReid_343

SJReid_344

SJReid_345

SJReid_346

SJReid_347

SJReid_348

SJReid_349
(SprT-like protease)

SJReid_350

SJReid_351

SJReid_352

SJReid_353

SJReid_354
Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 183
Pitt Freezer Box Grid# H9
Available Files
EM PictureDownload
GenBank File for PhameratorDownload