| Detailed Information for Phage Santhid |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Krista Riensche, Ashley VanEgdom, Gideon Fynaardt |
| Year Found | 2021 |
| Location Found | Orange City, IA United States |
| Finding Institution | Northwestern College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 21°C |
| GPS Coordinates | 42.99 N, 96.05 W Map |
| Discovery Notes | This soil sample was taken in a shady area along a tree line. I sampled soil beneath a Mulberry tree with lots of decaying fruit on the ground. The sample came from the top 1-2 inches of soil and was slightly moist. |
| Naming Notes | Santhid is a sea creature from the Stormlight Archives books by Brandon Sanderson. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 16, 2021 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1126 |
| Genome length (bp) | 39295 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | TCCGGAGGTA |
| GC Content | 67.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | DY |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | Northwestern College |
| Annotation Status | In GenBank |
| Plaque Notes | Santhid plaques are cloudy and not perfectly round. The plaques are quite small. |
| Morphotype | Siphoviridae |
| Number of Genes | 60 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OM818327 |
| Refseq Number | None yet |
| Published in Paper | Bastian et al 2022, Microbiology Resource Announcements: Complete Genome Sequences of Microbacterium Phages Clayda5 and Gshelby23 and Gordonia Phages Wrigley and Santhid |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
137 |
| Pitt Freezer Box Grid# |
B1 |
| Available Files |
| Plaque Picture | Download |
| GenBank File for Phamerator | Download |
