Gordonia phage Schmidt
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Detailed Information for Phage Schmidt
Discovery Information
Isolation HostGordonia terrae 3612
Former namesShmitty
Found BySydney Garcia and Stassi Henry
Year Found2017
Location FoundReno, NV USA
Finding InstitutionTruckee Meadows Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates43.638719 N, 116.241351 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 25, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1167
Genome length (bp)43099
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTCCGGCCGGTT
GC Content65.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCU
SubclusterCU4
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionTruckee Meadows Community College
Annotation StatusIn GenBank
Plaque NotesBullseye plaques
MorphotypeSiphoviridae
Number of Genes76
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Schmidt_1

Schmidt_2

Schmidt_3
(serine hydrolase)

Schmidt_4
(terminase small subunit)

Schmidt_5
(terminase)

Schmidt_6
(portal protein)

Schmidt_7
(capsid maturation protease)

Schmidt_8
(major capsid protein)

Schmidt_9

Schmidt_10
(head-to-tail connector complex protein)

Schmidt_11

Schmidt_12

Schmidt_13

Schmidt_14
(head-to-tail connector complex protein)

Schmidt_15
(major tail protein)

Schmidt_16
(tail assembly chaperone)

Schmidt_17
(tail assembly chaperone)

Schmidt_18
(tape measure protein)

Schmidt_19
(minor tail protein)

Schmidt_20
(minor tail protein)

Schmidt_21
(lysin A)

Schmidt_22

Schmidt_23

Schmidt_24
(minor tail protein)

Schmidt_25
(minor tail protein)

Schmidt_26

Schmidt_27
(minor tail protein)

Schmidt_28
(ssDNA-binding protein)

Schmidt_29

Schmidt_30

Schmidt_31

Schmidt_32
(integrase)

Schmidt_33

Schmidt_34
(immunity repressor)

Schmidt_35
(helix-turn-helix DNA-binding protein)

Schmidt_36
(ssDNA-binding protein)

Schmidt_37

Schmidt_38

Schmidt_39

Schmidt_40
(exonuclease)

Schmidt_41

Schmidt_42
(ERF family ssDNA binding protein)

Schmidt_43

Schmidt_44

Schmidt_45
(HNH endonuclease)

Schmidt_46

Schmidt_47
(helicase)

Schmidt_48
(ssDNA-binding protein)

Schmidt_49

Schmidt_50

Schmidt_51
(HNH endonuclease)

Schmidt_52

Schmidt_53

Schmidt_54

Schmidt_55
(helix-turn-helix DNA-binding domain protein)

Schmidt_56

Schmidt_57
(glutaredoxin)

Schmidt_58
(HNH endonuclease)

Schmidt_59

Schmidt_60
(HNH endonuclease)

Schmidt_61

Schmidt_62

Schmidt_63

Schmidt_64

Schmidt_65

Schmidt_66

Schmidt_67
(glycosylase)

Schmidt_68

Schmidt_69

Schmidt_70

Schmidt_71

Schmidt_72

Schmidt_73

Schmidt_74

Schmidt_75

Schmidt_76

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH651189
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.5E9
Pitt Freezer Box# 87
Pitt Freezer Box Grid# F5
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload