Gordonia phage Skog
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Detailed Information for Phage Skog
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJohan Elrubaie
Year Found2016
Location FoundFort Myers, FL USA
Finding InstitutionFlorida Gulf Coast University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates26.460342 N, 81.780203 W Map
Discovery NotesThe soil sample was taken underneath a damp mulch pile near the entrance to the FGCU Food Forest. The soil sample was enriched in Corynebacterium glutamicum NRRL B-2784 but the phage only grows on Gordonia terrae (NRRL B-16283).
Naming NotesThe phage was discovered in a soil sample taken from the Florida Gulf Coast University Food Forest."Skog" is the Norwegian word for forest.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 9, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage66
Genome length (bp)152435
Character of genome endsCircularly Permuted
GC Content65.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDO
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionFlorida Gulf Coast University
Annotation StatusIn GenBank
Plaque NotesThe plaques are turbid and very small (Approximately 1 millimeter in diameter). According to EM photographs, the phage appears to be a myovirus.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Skog_1

Skog_2

Skog_3
(lysin A)

Skog_4
(lysin A)

Skog_5
(holin)

Skog_6
(terminase)

Skog_7

Skog_8

Skog_9
(lysin B)

Skog_10
(RuvC-like resolvase)

Skog_11

Skog_12

Skog_13

Skog_14

Skog_15

Skog_16
(helix-turn-helix DNA-binding domain protein)

Skog_17

Skog_18

Skog_19

Skog_20

Skog_21

Skog_22

Skog_23

Skog_24

Skog_25

Skog_26

Skog_27

Skog_28

Skog_29

Skog_30

Skog_31

Skog_32
(HNH endonuclease)

Skog_33

Skog_34

Skog_35

Skog_36

Skog_37

Skog_38

Skog_39

Skog_40

Skog_41

Skog_42

Skog_43

Skog_44
(portal protein)

Skog_45

Skog_46

Skog_47

Skog_48

Skog_49

Skog_50

Skog_51

Skog_52

Skog_53

Skog_54
(HicB-like antitoxin)

Skog_55

Skog_56

Skog_57

Skog_58

Skog_59

Skog_60

Skog_61

Skog_62

Skog_63

Skog_64

Skog_65

Skog_66
(immunity repressor)

Skog_67

Skog_68

Skog_69

Skog_70

Skog_71

Skog_72

Skog_73

Skog_74

Skog_75
(nicotinate ribosyltransferase)

Skog_76

Skog_77

Skog_78

Skog_79

Skog_80

Skog_81

Skog_82

Skog_83

Skog_84

Skog_85

Skog_86

Skog_87

Skog_88

Skog_89

Skog_90

Skog_91

Skog_92

Skog_93

Skog_94

Skog_95

Skog_96

Skog_97

Skog_98

Skog_99

Skog_100

Skog_101

Skog_102
(MazG-like nucleotide pyrophosphohydrolase)

Skog_103

Skog_104

Skog_105

Skog_106

Skog_107
(helix-turn-helix DNA-binding domain protein)

Skog_108

Skog_109

Skog_110

Skog_111

Skog_112

Skog_113

Skog_114
(WhiB family transcription factor)

Skog_115

Skog_116

Skog_117

Skog_118

Skog_119

Skog_120

Skog_121

Skog_122

Skog_123
(ThyX-like thymidylate synthase)

Skog_124

Skog_125

Skog_126

Skog_127

Skog_128
(polynucleotide kinase)

Skog_129

Skog_130

Skog_131

Skog_132

Skog_133
(DnaQ-like DNA polymerase III subunit)

Skog_134

Skog_135

Skog_136

Skog_137

Skog_138
(helix-turn-helix DNA-binding domain protein)

Skog_139

Skog_140
(NrdH-like glutaredoxin)

Skog_141

Skog_142

Skog_143

Skog_144
(histidine triad nucleotide binding protein)

Skog_145

Skog_146

Skog_147

Skog_148

Skog_149

Skog_150

Skog_151
(portal protein)

Skog_152

Skog_153
(ThyX-like thymidylate synthase)

Skog_154

Skog_155
(RNA ligase)

Skog_156
(LysM-like endolysin)

Skog_157

Skog_158

Skog_159
(major capsid protein)

Skog_160
(tail spike protein)

Skog_161
(minor tail protein)

Skog_162
(minor tail protein)

Skog_163

Skog_164
(glycosylase)

Skog_165

Skog_166

Skog_167

Skog_168

Skog_169

Skog_170

Skog_171

Skog_172
(acetyltransferase)

Skog_173

Skog_174

Skog_175

Skog_176
(tail sheath protein)

Skog_177

Skog_178

Skog_179
(tail assembly chaperone)

Skog_180
(tail assembly chaperone)

Skog_181
(tape measure protein)

Skog_182

Skog_183

Skog_184

Skog_185
(minor tail protein)

Skog_186
(minor tail protein)

Skog_187

Skog_188
(minor tail protein)

Skog_189

Skog_190

Skog_191

Skog_192
(baseplate J protein)

Skog_193
(baseplate J protein)

Skog_194
(minor tail protein)

Skog_195

Skog_196
(DNA helicase)

Skog_197

Skog_198

Skog_199

Skog_200

Skog_201

Skog_202

Skog_203

Skog_204
(aminotransferase)

Skog_205

Skog_206
(DnaC-like helicase loader)

Skog_207
(DnaB-like dsDNA helicase)

Skog_208
(DNA primase)

Skog_209

Skog_210
(DnaJ-like chaperonin)

Skog_211
(ssDNA binding protein)

Skog_212
(DnaE-like DNA polymerase III)

Skog_213
(RecA-like DNA recombinase)

Skog_214

Skog_215
(holliday junction resolvase)

Skog_216
(exonuclease)

Skog_217

Skog_218

Skog_219

Skog_220

Skog_221

Skog_222

Skog_223

Skog_224

Skog_225

Skog_226

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN908687
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 44
Pitt Freezer Box Grid# H11
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload