| Detailed Information for Phage TWAMP | |
| Discovery Information | |
| Isolation Host | Rhodococcus erythropolis RIA 643 |
| Found By | Andrew Corso |
| Year Found | 2014 |
| Location Found | Williamsburg, VA USA |
| Finding Institution | College of William & Mary |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 37.282925 N, 76.664688 W Map |
| Discovery Notes | The phage was isolated from a large pile of compost that was compiled from human refuse. |
| Naming Notes | "Typical William and Mary Phage" |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 19, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 3982 |
| Genome length (bp) | 46596 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGCCGTGAT |
| GC Content | 58.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CA |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewAlatin Alpacados AngryOrchard AppleCloud Belenaria BobbyDazzler Bonanza Bradshaw Bryce CosmicSans Dinger Erik Espica Gollum Harlequin Hiro Jester Krishelle Lillie Naiad Nancinator Natosaleda Partridge PhailMary Phrankenstein Rasputin RER2 RexFury RGL3 Rhodalysa Shuman StCroix Swann Takoda TWAMP UhSalsa Yogi Yoncess |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | There appear to be two different types of plaque morphologies. For example, after several rounds of dilutions and once web lysis was achieved, a second type of circular plaque began developing. |
| Morphotype | Siphoviridae |
| Number of Genes | 66 |
| Number of tRNAs | 3 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewTWAMP_1 TWAMP_2 TWAMP_3 TWAMP_4 — tRNA TWAMP_5 — tRNA TWAMP_6 — tRNA TWAMP_7 TWAMP_8 TWAMP_9 TWAMP_10 TWAMP_11 TWAMP_12 TWAMP_13 TWAMP_14 TWAMP_15 TWAMP_16 TWAMP_17 TWAMP_18 TWAMP_19 TWAMP_20 TWAMP_21 TWAMP_22 TWAMP_23 TWAMP_24 TWAMP_25 TWAMP_26 TWAMP_27 TWAMP_28 TWAMP_29 TWAMP_30 TWAMP_31 TWAMP_32 TWAMP_33 TWAMP_34 TWAMP_35 TWAMP_36 TWAMP_37 TWAMP_38 TWAMP_39 TWAMP_40 TWAMP_41 TWAMP_42 TWAMP_43 TWAMP_44 TWAMP_45 TWAMP_46 TWAMP_47 TWAMP_48 TWAMP_49 TWAMP_50 TWAMP_51 TWAMP_52 TWAMP_53 TWAMP_54 TWAMP_55 TWAMP_56 TWAMP_57 TWAMP_58 TWAMP_59 TWAMP_60 TWAMP_61 TWAMP_62 TWAMP_63 TWAMP_64 TWAMP_65 TWAMP_66 TWAMP_67 TWAMP_68 TWAMP_69 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KT959213 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 1.2 x 10^10 PFU/mL |
| Pitt Freezer Box# | 9 |
| Pitt Freezer Box Grid# | H5 |
| Available Files | |
| Plaque Picture | Download |
| Final DNAMaster File | Download |