Mycobacterium phage Thoth
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Detailed Information for Phage Thoth
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByBrenden Johnson
Year Found2019
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature37°C
GPS Coordinates40.446665 N, 79.954304 W Map
Naming NotesThoth is the ancient egyptian god of writing, wisdom, and magic.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 20, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2416
Genome length (bp)64606
Character of genome endsCircularly Permuted
GC Content59.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterD
SubclusterD1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes88
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Thoth_1

Thoth_2

Thoth_3

Thoth_4
(capsid accessory protein)

Thoth_5

Thoth_6

Thoth_7
(VIP2-like ADP-ribosyltransferase toxin)

Thoth_8
(terminase)

Thoth_9
(portal protein)

Thoth_10

Thoth_11
(metalloprotease)

Thoth_12

Thoth_13
(MuF-like minor capsid protein)

Thoth_14

Thoth_15
(minor capsid protein)

Thoth_16
(major capsid protein)

Thoth_17

Thoth_18

Thoth_19
(head-to-tail stopper)

Thoth_20
(minor capsid protein)

Thoth_21
(tail terminator)

Thoth_22

Thoth_23

Thoth_24
(major tail protein)

Thoth_25
(tail assembly chaperone)

Thoth_26

Thoth_27
(tape measure protein)

Thoth_28
(minor tail protein)

Thoth_29
(minor tail protein)

Thoth_30
(minor tail protein)

Thoth_31
(minor tail protein)

Thoth_32
(minor tail protein)

Thoth_33

Thoth_34

Thoth_35
(lysin A)

Thoth_36

Thoth_37

Thoth_38

Thoth_39

Thoth_40
(lysin B)

Thoth_41

Thoth_42

Thoth_43

Thoth_44

Thoth_45

Thoth_46

Thoth_47

Thoth_48

Thoth_49

Thoth_50

Thoth_51

Thoth_52

Thoth_53
(DNA helicase)

Thoth_54

Thoth_55

Thoth_56

Thoth_57
(Cas4 family exonuclease)

Thoth_58

Thoth_59
(RecA-like DNA recombinase)

Thoth_60

Thoth_61

Thoth_62
(oxidoreductase)

Thoth_63
(phosphatase)

Thoth_64
(methyltransferase)

Thoth_65

Thoth_66
(oxidoreductase)

Thoth_67
(DnaE-like DNA polymerase III)

Thoth_68

Thoth_69
(ThyX-like thymidylate synthase)

Thoth_70
(RuvC-like resolvase)

Thoth_71

Thoth_72

Thoth_73

Thoth_74
(helix-turn-helix DNA-binding protein)

Thoth_75

Thoth_76

Thoth_77

Thoth_78

Thoth_79

Thoth_80

Thoth_81

Thoth_82

Thoth_83

Thoth_84

Thoth_85

Thoth_86

Thoth_87

Thoth_88
(DNA primase/polymerase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT889385
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 115
Pitt Freezer Box Grid# H2
Available Files
GenBank File for PhameratorDownload