Arthrobacter phage Utopia
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| Detailed Information for Phage Utopia | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis NRRL B-2880 |
| Found By | Ibrahim Muhammad |
| Year Found | 2024 |
| Location Found | Oakbrook, IL United States |
| Finding Institution | Benedictine University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 22°C |
| GPS Coordinates | 41.83 N, 87.98 W Map |
| Discovery Notes | My soil didn't have the nutrients required to create phages with my host bacteria, thus I adopted a phage. The weather was chilly when the adopted soil was collected. The soil contained worms and looked rich. There were also roots in this soil. |
| Naming Notes | My first phage name was taken, and at the time I wanted to live in a utopia, thus I chose this name. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 27, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina NextSeq 1000 |
| Read Type | Single-end reads |
| Read Length | 100 bp |
| Approximate Shotgun Coverage | 25899 |
| Genome length (bp) | 15346 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 15 bases |
| Overhang Sequence | CCACGGTCCCCGTCC |
| GC Content | 64.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | FE |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to View |
| Annotating Institution | Benedictine University |
| Annotation Status | In GenBank |
| Plaque Notes | My phage measured at 0.1 cm or 1 mm. This phage had a clear edge and a clear center making it a lytic phage. The TEM image helped me classify my phage as a Siphoviridae. This is due to the flexible tail and an icosahedral head. |
| Morphotype | Siphoviridae |
| Number of Genes | 22 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewUtopia_1 Utopia_2 Utopia_3 Utopia_4 Utopia_5 Utopia_6 Utopia_7 Utopia_8 Utopia_9 Utopia_10 Utopia_11 Utopia_12 Utopia_13 Utopia_14 Utopia_15 Utopia_16 Utopia_17 Utopia_18 Utopia_19 Utopia_20 Utopia_21 Utopia_22 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PV876972 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 218 |
| Pitt Freezer Box Grid# | G12 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
