| Detailed Information for Phage WaldoWhy | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Jessica Garcia |
| Year Found | 2016 |
| Location Found | Manhattan, KS USA |
| Finding Institution | Kansas State University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 10°C |
| GPS Coordinates | 39.045 N, 96.856 W Map |
| Discovery Notes | The sample was taken from a flower pot, 2 inches deep. The soil was 50 degrees F. It was moist and dark. The location was in a shaded area in someone's front yard. Junction City, KS |
| Naming Notes | He was so hard to find. WaldoWhy and I have a love-hate relationship. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 5, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 735 |
| Genome length (bp) | 64529 |
| Character of genome ends | Circularly Permuted |
| GC Content | 59.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | D |
| Subcluster | D1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to View |
| Annotating Institution | Kansas State University |
| Annotation Status | In GenBank |
| Plaque Notes | Lytic phage with an average plaque diameter of 1 mm after 24 hours. Rounded edges. Small pinpoint colonies. |
| Morphotype | Siphoviridae |
| Number of Genes | 89 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewWaldoWhy_1 WaldoWhy_2 WaldoWhy_3 WaldoWhy_4 WaldoWhy_5 WaldoWhy_6 WaldoWhy_7 WaldoWhy_8 WaldoWhy_9 WaldoWhy_10 WaldoWhy_11 WaldoWhy_12 WaldoWhy_13 WaldoWhy_14 WaldoWhy_15 WaldoWhy_16 WaldoWhy_17 WaldoWhy_18 WaldoWhy_19 WaldoWhy_20 WaldoWhy_21 WaldoWhy_22 WaldoWhy_23 WaldoWhy_24 WaldoWhy_25 WaldoWhy_26 WaldoWhy_27 WaldoWhy_28 WaldoWhy_29 WaldoWhy_30 WaldoWhy_31 WaldoWhy_32 WaldoWhy_33 WaldoWhy_34 WaldoWhy_35 WaldoWhy_36 WaldoWhy_37 WaldoWhy_38 WaldoWhy_39 WaldoWhy_40 WaldoWhy_41 WaldoWhy_42 WaldoWhy_43 WaldoWhy_44 WaldoWhy_45 WaldoWhy_46 WaldoWhy_47 WaldoWhy_48 WaldoWhy_49 WaldoWhy_50 WaldoWhy_51 WaldoWhy_52 WaldoWhy_53 WaldoWhy_54 WaldoWhy_55 WaldoWhy_56 WaldoWhy_57 WaldoWhy_58 WaldoWhy_59 WaldoWhy_60 WaldoWhy_61 WaldoWhy_62 WaldoWhy_63 WaldoWhy_64 WaldoWhy_65 WaldoWhy_66 WaldoWhy_67 WaldoWhy_68 WaldoWhy_69 WaldoWhy_70 WaldoWhy_71 WaldoWhy_72 WaldoWhy_73 WaldoWhy_74 WaldoWhy_75 WaldoWhy_76 WaldoWhy_77 WaldoWhy_78 WaldoWhy_79 WaldoWhy_80 WaldoWhy_81 WaldoWhy_82 WaldoWhy_83 WaldoWhy_84 WaldoWhy_85 WaldoWhy_86 WaldoWhy_87 WaldoWhy_88 WaldoWhy_89 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK494102 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 4.3 x (10^7) pfu/ml |
| Date of SEA Lysate Titering | Dec 6, 2016 |
| Pitt Freezer Box# | 35 |
| Pitt Freezer Box Grid# | A5 |
| Available Files | |
| EM Picture | Download |
| GenBank File for Phamerator | Download |