Detailed Information for Phage WaldoWhy | |
Discovery Information | |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Jessica Garcia |
Year Found | 2016 |
Location Found | Manhattan, KS USA |
Finding Institution | Kansas State University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 10°C |
GPS Coordinates | 39.045 N, 96.856 W Map |
Discovery Notes | The sample was taken from a flower pot, 2 inches deep. The soil was 50 degrees F. It was moist and dark. The location was in a shaded area in someone's front yard. Junction City, KS |
Naming Notes | He was so hard to find. WaldoWhy and I have a love-hate relationship. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 5, 2017 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Sequencer Used | Illumina MiSeq |
Read Type | Single-end reads |
Read Length | 150 bp |
Approximate Shotgun Coverage | 735 |
Genome length (bp) | 64529 |
Character of genome ends | Circularly Permuted |
GC Content | 59.7% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | D |
Subcluster | D1 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
Click to View |
Annotating Institution | Kansas State University |
Annotation Status | In GenBank |
Plaque Notes | Lytic phage with an average plaque diameter of 1 mm after 24 hours. Rounded edges. Small pinpoint colonies. |
Morphotype | Siphoviridae |
Number of Genes | 89 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
Click to ViewWaldoWhy_1 WaldoWhy_2 WaldoWhy_3 WaldoWhy_4 WaldoWhy_5 WaldoWhy_6 WaldoWhy_7 WaldoWhy_8 WaldoWhy_9 WaldoWhy_10 WaldoWhy_11 WaldoWhy_12 WaldoWhy_13 WaldoWhy_14 WaldoWhy_15 WaldoWhy_16 WaldoWhy_17 WaldoWhy_18 WaldoWhy_19 WaldoWhy_20 WaldoWhy_21 WaldoWhy_22 WaldoWhy_23 WaldoWhy_24 WaldoWhy_25 WaldoWhy_26 WaldoWhy_27 WaldoWhy_28 WaldoWhy_29 WaldoWhy_30 WaldoWhy_31 WaldoWhy_32 WaldoWhy_33 WaldoWhy_34 WaldoWhy_35 WaldoWhy_36 WaldoWhy_37 WaldoWhy_38 WaldoWhy_39 WaldoWhy_40 WaldoWhy_41 WaldoWhy_42 WaldoWhy_43 WaldoWhy_44 WaldoWhy_45 WaldoWhy_46 WaldoWhy_47 WaldoWhy_48 WaldoWhy_49 WaldoWhy_50 WaldoWhy_51 WaldoWhy_52 WaldoWhy_53 WaldoWhy_54 WaldoWhy_55 WaldoWhy_56 WaldoWhy_57 WaldoWhy_58 WaldoWhy_59 WaldoWhy_60 WaldoWhy_61 WaldoWhy_62 WaldoWhy_63 WaldoWhy_64 WaldoWhy_65 WaldoWhy_66 WaldoWhy_67 WaldoWhy_68 WaldoWhy_69 WaldoWhy_70 WaldoWhy_71 WaldoWhy_72 WaldoWhy_73 WaldoWhy_74 WaldoWhy_75 WaldoWhy_76 WaldoWhy_77 WaldoWhy_78 WaldoWhy_79 WaldoWhy_80 WaldoWhy_81 WaldoWhy_82 WaldoWhy_83 WaldoWhy_84 WaldoWhy_85 WaldoWhy_86 WaldoWhy_87 WaldoWhy_88 WaldoWhy_89 |
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info | |
Uploaded to GenBank? | Yes |
GenBank Accession | MK494102 |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
SEA Lysate Titer | 4.3 x (10^7) pfu/ml |
Date of SEA Lysate Titering | Dec 6, 2016 |
Pitt Freezer Box# | 35 |
Pitt Freezer Box Grid# | A5 |
Available Files | |
EM Picture | Download |
GenBank File for Phamerator | Download |