| Detailed Information for Phage Yogi | |
| Discovery Information | |
| Isolation Host | Rhodococcus erythropolis RIA 643 |
| Found By | Spencer Lambert & Laura Beth Aulds |
| Year Found | 2015 |
| Location Found | Richland Parish, LA USA |
| Finding Institution | University of Louisiana at Monroe |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 32.388700 N, 91.792800 W Map |
| Discovery Notes | Yogi was found under a decaying log(part of the sample was some of the decaying bark) on a levee of a pond underneath shade of cypress trees. The soil was mostly dry, maybe a little moisture. Dark colored soil. |
| Naming Notes | We named our phage Yogi because while we were collecting the soil sample there was a black bear 75 yards from us watching us take the sample. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Nov 23, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 4855 |
| Genome length (bp) | 46930 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGCCGTGAT |
| GC Content | 58.8% |
| Sequencing Notes | There is a polymorphism in the reads for this genome. At position 33068, 46% of the reads call an "A" instead of the reported consensus base "G". |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CA |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewAlatin Alpacados AngryOrchard AppleCloud Belenaria BobbyDazzler Bonanza Bradshaw Bryce CosmicSans Dinger Erik Espica Gollum Harlequin Hiro Jester Krishelle Lillie Naiad Nancinator Natosaleda Partridge PhailMary Phrankenstein Rasputin RER2 RexFury RGL3 Rhodalysa Shuman StCroix Swann Takoda TWAMP UhSalsa Yogi Yoncess |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques were medium, clear circles. The diameter of the circles were uniform throughout the plate. The plaques formed within 18 hours of the infection. The titer was 10^10. |
| Morphotype | Siphoviridae |
| Number of Genes | 66 |
| Number of tRNAs | 3 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewYogi_1 Yogi_2 Yogi_3 Yogi_4 — tRNA Yogi_5 — tRNA Yogi_6 — tRNA Yogi_7 Yogi_8 Yogi_9 Yogi_10 Yogi_11 Yogi_12 Yogi_13 Yogi_14 Yogi_15 Yogi_16 Yogi_17 Yogi_18 Yogi_19 Yogi_20 Yogi_21 Yogi_22 Yogi_23 Yogi_24 Yogi_25 Yogi_26 Yogi_27 Yogi_28 Yogi_29 Yogi_30 Yogi_31 Yogi_32 Yogi_33 Yogi_34 Yogi_35 Yogi_36 Yogi_37 Yogi_38 Yogi_39 Yogi_40 Yogi_41 Yogi_42 Yogi_43 Yogi_44 Yogi_45 Yogi_46 Yogi_47 Yogi_48 Yogi_49 Yogi_50 Yogi_51 Yogi_52 Yogi_53 Yogi_54 Yogi_55 Yogi_56 Yogi_57 Yogi_58 Yogi_59 Yogi_60 Yogi_61 Yogi_62 Yogi_63 Yogi_64 Yogi_65 Yogi_66 Yogi_67 Yogi_68 Yogi_69 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KX712236 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 22 |
| Pitt Freezer Box Grid# | H12 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |