Detailed Information for Phage Avian |
Discovery Information |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Former names | Rubriterminatr |
Found By | Ian Rasmussen |
Year Found | 2023 |
Location Found | Durham, NC United States |
Finding Institution | Durham Technical Community College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 35.948253 N, 79.050567 W Map |
Discovery Notes | This phage was found in a raised bed of soil, where we house Coturnix Quail. |
Naming Notes | Formally called Rubriterminatr and the archive sample is named this way. However, this name is not acceptable as it includes the host name. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Mar 20, 2024 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 28 |
Genome length (bp) | 65287 |
Character of genome ends | Circularly Permuted |
GC Content | 57.6% |
Sequencing Notes | This phage was sequenced as part of a DOGEMS sample. |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | DV |
Subcluster | -- |
Cluster Life Cycle | Unknown |
Other Cluster Members |
|
Annotating Institution | Durham Technical Community College |
Annotation Status | Being Annotated (Expected completion by 9/20/2024) |
Plaque Notes | clear plaques with defined borders. |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
175 |
Pitt Freezer Box Grid# |
H9 |
Available Files |
EM Picture | Download |