| Detailed Information for Phage Blackpen | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Taylor Preston |
| Year Found | 2025 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.444759 N, 79.954152 W Map |
| Discovery Notes | Phage found during spring 2025 Connor Stover, Eugene Chang, and Dylan Bhandary worked on this |
| Naming Notes | A unique name which is easy to remember. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 6, 2025 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina NextSeq 1000 |
| Read Type | Paired-end reads |
| Read Length | 300 bp |
| Approximate Shotgun Coverage | 16600 |
| Genome length (bp) | 60286 |
| Character of genome ends | Circularly Permuted |
| GC Content | 68.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DR |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | Being Annotated (Expected completion by 12/31/2025) |
| Number of Genes | 83 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBlackpen_1 Blackpen_2 Blackpen_3 Blackpen_4 Blackpen_5 Blackpen_6 Blackpen_7 Blackpen_8 Blackpen_9 Blackpen_10 Blackpen_11 Blackpen_12 Blackpen_13 Blackpen_14 Blackpen_15 Blackpen_16 Blackpen_17 Blackpen_18 Blackpen_19 Blackpen_20 Blackpen_21 Blackpen_22 Blackpen_23 Blackpen_24 Blackpen_25 Blackpen_26 Blackpen_27 Blackpen_28 Blackpen_29 Blackpen_30 Blackpen_31 Blackpen_32 Blackpen_33 Blackpen_34 Blackpen_35 Blackpen_36 Blackpen_37 Blackpen_38 Blackpen_39 Blackpen_40 Blackpen_41 Blackpen_42 Blackpen_43 Blackpen_44 Blackpen_45 Blackpen_46 Blackpen_47 Blackpen_48 Blackpen_49 Blackpen_50 Blackpen_51 Blackpen_52 Blackpen_53 Blackpen_54 Blackpen_55 Blackpen_56 Blackpen_57 Blackpen_58 Blackpen_59 Blackpen_60 Blackpen_61 Blackpen_62 Blackpen_63 Blackpen_64 Blackpen_65 Blackpen_66 Blackpen_67 Blackpen_68 Blackpen_69 Blackpen_70 Blackpen_71 Blackpen_72 Blackpen_73 Blackpen_74 Blackpen_75 Blackpen_76 Blackpen_77 Blackpen_78 Blackpen_79 Blackpen_80 Blackpen_81 Blackpen_82 Blackpen_83 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 216 |
| Pitt Freezer Box Grid# | C3 |
| Available Files | |
| Plaque Picture | Download |
