The Actinobacteriophage Database

Gordonia phage CaiB

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Detailed Information for Phage CaiB
Discovery Information
Isolation Host	Gordonia rubripertincta NRRL B-16540
Found By	Bienna Welsh, Dr. Richard Pollenz
Year Found	2021
Location Found	Tampa, FL United States of America
Finding Institution	University of South Florida
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	29°C
GPS Coordinates	28.086388 N, 82.384166 W Map
Discovery Notes	I had to adopt a phage from my professor whose name is Dr. Richard Pollenz.
Naming Notes	Pronounced: Cai-B. The first three letters are the beginning of my brother's name and the last letter is the initial of my first name.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Nov 28, 2021
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Approximate Shotgun Coverage	591
Genome length (bp)	61620
Character of genome ends	Circularly Permuted
GC Content	68.6%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	DR
Subcluster	--
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View AksarBAT AnarQue AnClar Axumite BiggityBass Blackpen BobRoss2024 CaiB CharlottesWeb CloverMinnie Coldpizza Evaa FelixTres Fresco Ligma LittleMunchkin MakoManhole Mariokart MossRose NHagos Shatter Sisko Sour TraderJ Wooper Yago84 Yeshua
Annotating Institution	University of South Florida
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	85
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View CaiB_1 (ParB-like nuclease domain protein) CaiB_2 (oxidoreductase) CaiB_3 CaiB_4 (adenylate kinase) CaiB_5 (oxidoreductase) CaiB_6 (terminase) CaiB_7 CaiB_8 (RuvC-like resolvase) CaiB_9 CaiB_10 (portal protein) CaiB_11 CaiB_12 CaiB_13 (major capsid hexamer protein) CaiB_14 (major capsid pentamer protein) CaiB_15 CaiB_16 CaiB_17 CaiB_18 CaiB_19 CaiB_20 (major tail protein) CaiB_21 (head-to-tail adaptor) CaiB_22 CaiB_23 CaiB_24 CaiB_25 CaiB_26 (tape measure protein) CaiB_27 (minor tail protein) CaiB_28 (minor tail) CaiB_29 (minor tail) CaiB_30 CaiB_31 CaiB_32 CaiB_33 CaiB_34 CaiB_35 CaiB_36 CaiB_37 (glycoside hydrolase) CaiB_38 CaiB_39 CaiB_40 (DNA binding protein) CaiB_41 (helix-turn-helix DNA binding domain protein) CaiB_42 CaiB_43 (lysin A, L-Ala-D-Glu peptidase domain) CaiB_44 (lysin A, glycosyl hydrolase domain) CaiB_45 (lysin B) CaiB_46 CaiB_47 (exonuclease) CaiB_48 (ParB-like nuclease domain protein) CaiB_49 (DNA helicase) CaiB_50 CaiB_51 CaiB_52 (DNA primase/polymerase/helicase) CaiB_53 CaiB_54 (DNA polymerase I) CaiB_55 CaiB_56 CaiB_57 CaiB_58 CaiB_59 CaiB_60 CaiB_61 CaiB_62 (ribbon-helix-helix DNA binding domain protein) CaiB_63 CaiB_64 CaiB_65 (helix-turn-helix DNA binding domain protein) CaiB_66 CaiB_67 CaiB_68 CaiB_69 CaiB_70 CaiB_71 CaiB_72 CaiB_73 (DNA binding protein) CaiB_74 CaiB_75 CaiB_76 CaiB_77 CaiB_78 (HNH endonuclease) CaiB_79 CaiB_80 CaiB_81 CaiB_82 CaiB_83 CaiB_84 CaiB_85
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	ON108644
Refseq Number	None yet
Published in Paper	Welsh et al 2022, Microbiology Resource Announcements: Genome Sequence of CaiB, a DR Cluster Actinobacteriophage That Infects Gordonia rubripertincta
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	132
Pitt Freezer Box Grid#	D12
Available Files
GenBank File for Phamerator	Download

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