Arthrobacter phage Giantsbane
Know something about this phage that we don't? Modify its data.
| Detailed Information for Phage Giantsbane | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Andy (Anya) Alag |
| Year Found | 2019 |
| Location Found | Los Angeles, CA United States |
| Finding Institution | University of California, Los Angeles |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 25°C |
| GPS Coordinates | 34.065562 N, 118.441146 W Map |
| Discovery Notes | Arthrobacter phage Giantsbane was isolated from soil by direct plating at 25°C. The sample was collected by Anya Alag in Los Angeles, CA next to a tree, about 50m from a stream. Giantsbane was isolated, characterized, and annotated by Pei Ying (Alex) Chen, Christopher Liu, Preston Dang, Michael Zhang, Heather A. Angel, Abbas Hakim, and Derek Q. Lam. Instructor: Amanda Freise Teaching Assistants: Ryan Ngo, Andrew Kapinos Undergraduate Assistants: Yvette Lakkis, Andrew Lee |
| Naming Notes | We like Game of Thrones |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 21, 2019 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 2197 |
| Genome length (bp) | 56734 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCCGGCCT |
| GC Content | 50.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AU |
| Subcluster | AU2 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | University of California, Los Angeles |
| Annotation Status | In GenBank |
| Plaque Notes | Clear, turbid, or bullseye plaques. Average diameter: 0.5-1 mm |
| Morphotype | Siphoviridae |
| Number of Genes | 94 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List | |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MN703412 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 116 |
| Pitt Freezer Box Grid# | C7 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |