The Actinobacteriophage Database

Arthrobacter phage Giantsbane

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Detailed Information for Phage Giantsbane
Discovery Information
Isolation Host	Arthrobacter globiformis B-2979
Found By	Andy (Anya) Alag
Year Found	2019
Location Found	Los Angeles, CA United States
Finding Institution	University of California, Los Angeles
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	No
Isolation Temperature	25°C
GPS Coordinates	34.065562 N, 118.441146 W Map
Discovery Notes	Arthrobacter phage Giantsbane was isolated from soil by direct plating at 25°C. The sample was collected by Anya Alag in Los Angeles, CA next to a tree, about 50m from a stream. Giantsbane was isolated, characterized, and annotated by Pei Ying (Alex) Chen, Christopher Liu, Preston Dang, Michael Zhang, Heather A. Angel, Abbas Hakim, and Derek Q. Lam. Instructor: Amanda Freise Teaching Assistants: Ryan Ngo, Andrew Kapinos Undergraduate Assistants: Yvette Lakkis, Andrew Lee
Naming Notes	We like Game of Thrones
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Aug 21, 2019
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Approximate Shotgun Coverage	2197
Genome length (bp)	56734
Character of genome ends	3' Sticky Overhang
Overhang Length	9 bases
Overhang Sequence	CGCCGGCCT
GC Content	50.1%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	AU
Subcluster	AU2
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Inked (None) Acai (AU1) AreFloNak (AU1) Breylor17 (AU1) Brunswick (AU1) CapnMurica (AU1) CastorTray (AU1) Darby (AU1) DevitoJr (AU1) ElephantMan (AU1) Gordon (AU1) Issa (AU1) LucySwiss (AU1) MiniBagel (AU1) Nightmare (AU1) Niktson (AU1) Nivinsha (AU1) ScienceWizSam (AU1) Synepsis (AU1) Tatanka (AU1) Teacup (AU1) Tenno (AU1) Trustiboi (AU1) Bouchard (AU2) Chlochlo (AU2) Giantsbane (AU2) LilHuddy (AU2) Phaby (AU2) Shepard (AU2) Tokki (AU2) Ingrid (AU3) Loretta (AU3) Zippen (AU3) Caterpillar (AU4) MediumFry (AU4) Makai (AU5) Truckee (AU5) Argan (AU6) BarbieDoll (AU6) Biscute (AU6) GantcherGoblin (AU6) KevinMinion (AU6) Kinny (AU6) Leathea (AU6) Lewando (AU6) Navi1117 (AU6) Phaila (AU6) Renaldo (AU6) Tenney120 (AU6) TrixiePhattel (AU6) Uzumaki (AU6) Zeina (AU6)
Annotating Institution	University of California, Los Angeles
Annotation Status	In GenBank
Plaque Notes	Clear, turbid, or bullseye plaques. Average diameter: 0.5-1 mm
Morphotype	Siphoviridae
Number of Genes	94
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Giantsbane_1 Giantsbane_2 (HNH endonuclease) Giantsbane_3 (lysin A) Giantsbane_4 Giantsbane_5 Giantsbane_6 Giantsbane_7 (terminase) Giantsbane_8 Giantsbane_9 Giantsbane_10 (acetyltransferase) Giantsbane_11 Giantsbane_12 Giantsbane_13 (portal protein) Giantsbane_14 Giantsbane_15 (major capsid and protease fusion protein) Giantsbane_16 Giantsbane_17 (tail terminator) Giantsbane_18 (major tail protein) Giantsbane_19 Giantsbane_20 Giantsbane_21 (minor tail protein) Giantsbane_22 Giantsbane_23 (major tail protein) Giantsbane_24 Giantsbane_25 Giantsbane_26 (minor tail protein) Giantsbane_27 (tape measure protein) Giantsbane_28 (minor tail protein) Giantsbane_29 (minor tail protein) Giantsbane_30 Giantsbane_31 (minor tail protein) Giantsbane_32 Giantsbane_33 Giantsbane_34 Giantsbane_35 Giantsbane_36 Giantsbane_37 Giantsbane_38 Giantsbane_39 Giantsbane_40 Giantsbane_41 Giantsbane_42 Giantsbane_43 Giantsbane_44 Giantsbane_45 Giantsbane_46 Giantsbane_47 Giantsbane_48 Giantsbane_49 Giantsbane_50 Giantsbane_51 Giantsbane_52 Giantsbane_53 Giantsbane_54 Giantsbane_55 Giantsbane_56 Giantsbane_57 Giantsbane_58 Giantsbane_59 (DNA primase/polymerase) Giantsbane_60 Giantsbane_61 Giantsbane_62 Giantsbane_63 Giantsbane_64 Giantsbane_65 Giantsbane_66 Giantsbane_67 Giantsbane_68 Giantsbane_69 Giantsbane_70 Giantsbane_71 Giantsbane_72 Giantsbane_73 (HNH endonuclease) Giantsbane_74 Giantsbane_75 Giantsbane_76 Giantsbane_77 (DNA helicase) Giantsbane_78 Giantsbane_79 Giantsbane_80 (HNH endonuclease) Giantsbane_81 Giantsbane_82 Giantsbane_83 Giantsbane_84 (helix-turn-helix DNA-binding domain protein) Giantsbane_85 Giantsbane_86 Giantsbane_87 Giantsbane_88 Giantsbane_89 Giantsbane_90 Giantsbane_91 (VRR-Nuc domain protein) Giantsbane_92 (Cas4 family exonuclease) Giantsbane_93 (helix-turn-helix DNA-binding domain protein) Giantsbane_94
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MN703412
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	116
Pitt Freezer Box Grid#	C7
Available Files
Plaque Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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