| Detailed Information for Phage Karp |
| Discovery Information |
| Isolation Host | Streptomyces viridochromogenes DSM40736 |
| Found By | Isabel Silverman and Annabelle Laughlin |
| Year Found | 2019 |
| Location Found | St. Louis, MO USA |
| Finding Institution | Washington University in St. Louis |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 27°C |
| GPS Coordinates | 38.6362 N, 90.2913 W Map |
| Discovery Notes | Karp was found in the St. Louis Zoo is Forest Park. The soil artificially-applied soil (not naturally occuring), layered beneath wood chips
The soil was rich and moist with little organic matter. |
| Naming Notes | We named our phage after our Washington University Student Associate, Leo Karp. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jun 24, 2020 |
| Sequencing Facility | The McDonnell Genome Institute at Washington University |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 92 |
| Genome length (bp) | 130557 |
| Character of genome ends | Direct Terminal Repeat |
| Direct Terminal Repeat Length | 734 bp |
| GC Content | 47.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | BK |
| Subcluster | BK1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Washington University in St. Louis |
| Annotation Status | In GenBank |
| Plaque Notes | Small plaques, with around a 0.75 mm diameter.
They are not perfectly circular, with jagged but crisp edges. |
| Number of Genes | 235 |
| Number of tRNAs | 34 |
| Number of tmRNAs | 1 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MZ820095 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Not in Pitt Archives |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
