| Detailed Information for Phage Kumquat |
| Discovery Information |
| Isolation Host | Streptomyces lividans JI 1326 |
| Found By | Bridget Chung and Douglas Thibodeaux |
| Year Found | 2022 |
| Location Found | St. Louis, MO United States |
| Finding Institution | Washington University in St. Louis |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 38.645656 N, 90.311534 W Map |
| Discovery Notes | Surface level
Soil is damp, dark, also is pretty much compost, with debris in it
66 degrees Fahrenheit |
| Naming Notes | The soil was obtained from the gardening club called The Burning Kumquat and so the phage will be named Kumquat. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 16, 2023 |
| Sequencing Facility | The McDonnell Genome Institute at Washington University |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 415 |
| Genome length (bp) | 44847 |
| Character of genome ends | Direct Terminal Repeat |
| Direct Terminal Repeat Length | 264 bp |
| GC Content | 60.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | BF |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Washington University in St. Louis |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques were small to medium sized and irregularly shaped. They had cloudy edges and clear centers. |
| Number of Genes | 62 |
| Number of tRNAs | 22 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OR193800 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Not in Pitt Archives |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
