| Detailed Information for Phage Lilas | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Lindsay Ejoh |
| Year Found | 2017 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.4404 N, 79.9558 W Map |
| Discovery Notes | Soil was dry and fine, made from compost materials. It rained hours before collection. |
| Naming Notes | My parents are close friends with a family in Switzerland. They grew up with the mom and dad in Cameroon. The two parents have a child named Lilas. This is a French name, pronounced Lee-LAH. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Nov 30, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Genome length (bp) | 52632 |
| Character of genome ends | Unknown |
| Overhang Length | 10 bases |
| Overhang Sequence | CGTATGGCAT |
| GC Content | 66.9% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CY |
| Subcluster | CY1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | This phage creates two different types of cloudy plaque morphologies: large (3 mm) , and small, cloudy (1 mm) plaques. |
| Morphotype | Siphoviridae |
| Number of Genes | 76 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewLilas_1 Lilas_2 Lilas_3 Lilas_4 Lilas_5 Lilas_6 Lilas_7 Lilas_8 Lilas_9 Lilas_10 Lilas_11 Lilas_12 Lilas_13 Lilas_14 Lilas_15 Lilas_16 Lilas_17 Lilas_18 Lilas_19 Lilas_20 Lilas_21 Lilas_22 Lilas_23 Lilas_24 Lilas_25 Lilas_26 Lilas_27 Lilas_28 Lilas_29 Lilas_30 Lilas_31 Lilas_32 Lilas_33 Lilas_34 Lilas_35 Lilas_36 Lilas_37 Lilas_38 Lilas_39 Lilas_40 Lilas_41 Lilas_42 Lilas_43 Lilas_44 Lilas_45 Lilas_46 Lilas_47 Lilas_48 Lilas_49 Lilas_50 Lilas_51 Lilas_52 Lilas_53 Lilas_54 Lilas_55 Lilas_56 Lilas_57 Lilas_58 Lilas_59 Lilas_60 Lilas_61 Lilas_62 Lilas_63 Lilas_64 Lilas_65 Lilas_66 Lilas_67 Lilas_68 Lilas_69 Lilas_70 Lilas_71 Lilas_72 Lilas_73 Lilas_74 Lilas_75 Lilas_76 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK284520 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 1.0x10^11 pfu |
| Pitt Freezer Box# | 57 |
| Pitt Freezer Box Grid# | F2 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
