Gordonia phage EMsquaredA
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Detailed Information for Phage EMsquaredA
Discovery Information
Isolation HostGordonia terrae 3612
Former namesEM2A
Found ByEmmanuella Lafortune
Year Found2017
Location FoundNyack, NY United States of America
Finding InstitutionNyack College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates41.0915 N, 73.9205 W Map
Naming NotesEM2A, it can aslo pronounce as EMMA and EMMA comes from my full name Emmanuella and because there are two Ms and Ls, instead of writing my full name, I sometime put, a 2 which mean square. M2 (square).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 19, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage697
Genome length (bp)50531
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGTATGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCY
SubclusterCY1
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusQC Complete
Plaque Notesthe plaque seem to be foggy but it is clear enough to see, how many plaques on it. because the plate was in the fridge for a while, there is an orange-ish color on the plate.
Has been Phamerated?Yes
Gene List

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EMsquaredA_1
(terminase, small subunit)

EMsquaredA_2
(terminase, large subunit)

EMsquaredA_3
(portal protein)

EMsquaredA_4
(capsid maturation protease)

EMsquaredA_5
(scaffolding protein)

EMsquaredA_6
(capsid decoration protein)

EMsquaredA_7
(major capsid protein)

EMsquaredA_8

EMsquaredA_9
(head-to-tail adaptor)

EMsquaredA_10
(head-to-tail stopper)

EMsquaredA_11

EMsquaredA_12

EMsquaredA_13
(tail terminator)

EMsquaredA_14
(major tail protein)

EMsquaredA_15
(tail assembly chaperone)

EMsquaredA_16
(tail assembly chaperone)

EMsquaredA_17

EMsquaredA_18
(tape measure protein)

EMsquaredA_19
(minor tail protein)

EMsquaredA_20
(minor tail protein)

EMsquaredA_21

EMsquaredA_22
(lysin A)

EMsquaredA_23
(holin)

EMsquaredA_24
(membrane protein)

EMsquaredA_25

EMsquaredA_26
(membrane protein)

EMsquaredA_27
(lysin B)

EMsquaredA_28

EMsquaredA_29
(minor tail protein)

EMsquaredA_30
(minor tail protein)

EMsquaredA_31

EMsquaredA_32

EMsquaredA_33

EMsquaredA_34

EMsquaredA_35

EMsquaredA_36
(integrase, (Y-int))

EMsquaredA_37
(integrase, (Y-int))

EMsquaredA_38
(helix-turn-helix DNA binding domain)

EMsquaredA_39
(metalloprotease)

EMsquaredA_40

EMsquaredA_41
(kinase)

EMsquaredA_42
(membrane protein)

EMsquaredA_43

EMsquaredA_44
(helix-turn-helix DNA binding domain)

EMsquaredA_45

EMsquaredA_46

EMsquaredA_47

EMsquaredA_48
(excise)

EMsquaredA_49
(membrane protein)

EMsquaredA_50

EMsquaredA_51

EMsquaredA_52

EMsquaredA_53

EMsquaredA_54
(DnaQ-like exonuclease (DNA polymerase III subunit))

EMsquaredA_55

EMsquaredA_56
(RecE-like exonuclease)

EMsquaredA_57
(RecT-like ssDNA binding protein)

EMsquaredA_58

EMsquaredA_59

EMsquaredA_60

EMsquaredA_61

EMsquaredA_62
(membrane protein)

EMsquaredA_63
(HNH endonuclease)

EMsquaredA_64
(DNA methylase)

EMsquaredA_65

EMsquaredA_66
(helix-turn-helix DNA binding domain)

EMsquaredA_67

EMsquaredA_68
(ADP-ribosyltransferase)

EMsquaredA_69

EMsquaredA_70

EMsquaredA_71

EMsquaredA_72

EMsquaredA_73
(RusA-like resolvase (endonuclease))

EMsquaredA_74

EMsquaredA_75

EMsquaredA_76

EMsquaredA_77
(helix-turn-helix DNA binding domain, MerR-like)

EMsquaredA_78

EMsquaredA_79

EMsquaredA_80
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 71
Pitt Freezer Box Grid# H4
Available Files
GenBank File for PhameratorDownload