| Detailed Information for Phage Madi | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Desiree, Maggie, Ananya, Izabella |
| Year Found | 2020 |
| Location Found | Pittsburgh, PA United States |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.441947 N, 79.952079 W Map |
| Discovery Notes | Collected at 4:20 pm August 24, 2020 Next to the sidewalk by the Mary Schenley Memorial Fountain Weather: It was bright and sunny outside |
| Naming Notes | The name originates from the first letter of the first name of each member in the lab group Maggie Yang Ananya Shivakumar Desiree Amewotho Izabella Zadrozny |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 21, 2021 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 337 |
| Genome length (bp) | 66439 |
| Character of genome ends | Circularly Permuted |
| GC Content | 59.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DG |
| Subcluster | DG1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | Clear plaques that are approximately 1 mm in diameter |
| Number of Genes | 95 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewMadi_1 Madi_2 Madi_3 Madi_4 Madi_5 Madi_6 Madi_7 Madi_8 Madi_9 Madi_10 Madi_11 Madi_12 Madi_13 Madi_14 Madi_15 Madi_16 Madi_17 Madi_18 Madi_19 Madi_20 Madi_21 Madi_22 Madi_23 Madi_24 Madi_25 Madi_26 Madi_27 Madi_28 Madi_29 Madi_30 Madi_31 Madi_32 Madi_33 Madi_34 Madi_35 Madi_36 Madi_37 Madi_38 Madi_39 Madi_40 Madi_41 Madi_42 Madi_43 Madi_44 Madi_45 Madi_46 Madi_47 Madi_48 Madi_49 Madi_50 Madi_51 Madi_52 Madi_53 Madi_54 Madi_55 Madi_56 Madi_57 Madi_58 Madi_59 Madi_60 Madi_61 Madi_62 Madi_63 Madi_64 Madi_65 Madi_66 Madi_67 Madi_68 Madi_69 Madi_70 Madi_71 Madi_72 Madi_73 Madi_74 Madi_75 Madi_76 Madi_77 Madi_78 Madi_79 Madi_80 Madi_81 Madi_82 Madi_83 Madi_84 Madi_85 Madi_86 Madi_87 Madi_88 Madi_89 Madi_90 Madi_91 Madi_92 Madi_93 Madi_94 Madi_95 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MZ171372 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 125 |
| Pitt Freezer Box Grid# | G3 |
| Available Files | |
| Plaque Picture | Download |
| GenBank File for Phamerator | Download |