| Detailed Information for Phage Nova | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Joe McMaster (Nova) |
| Year Found | 2006 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.446526 N, 79.954479 W Map |
| Naming Notes | A representative from Nova came to check out our program. though we didn't make it to a TV show, we were able to isolate a phage from the sample that Joe dug from the dirt. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Sep 20, 2011 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | 454 Pyrosequencing |
| Approximate Shotgun Coverage | 105 |
| Genome length (bp) | 65108 |
| Character of genome ends | Circularly Permuted |
| GC Content | 59.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | D |
| Subcluster | D1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 88 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewNova_1 Nova_2 Nova_3 Nova_4 Nova_5 Nova_6 Nova_7 Nova_8 Nova_9 Nova_10 Nova_11 Nova_12 Nova_13 Nova_14 Nova_15 Nova_16 Nova_17 Nova_18 Nova_19 Nova_20 Nova_21 Nova_22 Nova_23 Nova_24 Nova_25 Nova_26 Nova_27 Nova_28 Nova_29 Nova_30 Nova_31 Nova_32 Nova_33 Nova_34 Nova_35 Nova_36 Nova_37 Nova_38 Nova_39 Nova_40 Nova_41 Nova_42 Nova_43 Nova_44 Nova_45 Nova_46 Nova_47 Nova_48 Nova_49 Nova_50 Nova_51 Nova_52 Nova_53 Nova_54 Nova_55 Nova_56 Nova_57 Nova_58 Nova_59 Nova_60 Nova_61 Nova_62 Nova_63 Nova_64 Nova_65 Nova_66 Nova_67 Nova_68 Nova_69 Nova_70 Nova_71 Nova_72 Nova_73 Nova_74 Nova_75 Nova_76 Nova_77 Nova_78 Nova_79 Nova_80 Nova_81 Nova_82 Nova_83 Nova_84 Nova_85 Nova_86 Nova_87 Nova_88 |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | JN699014 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 2 |
| Pitt Freezer Box Grid# | E6 |
| Available Files | |
| Plaque Picture | Download |
| Virtual Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
