| Detailed Information for Phage Parada | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Praise Olatunde |
| Year Found | 2016 |
| Location Found | Grand Rapids, MI USA |
| Finding Institution | Calvin University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 42.933611 N, 85.590833 W Map |
| Discovery Notes | -Soil sample obtained from under the squash plants in the Calvin Campus Garden in Sept. -Moist, wet dark brown dirt |
| Naming Notes | Name comes from the Yoruba Language Meaning in English is : "renewing" |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | May 4, 2017 |
| Sequencing Facility | NC State Genomic Sciences Laboratory |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 539 |
| Genome length (bp) | 49909 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | TGCCGCGGTA |
| GC Content | 67.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DI |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | University of Wisconsin-River Falls |
| Annotation Status | In GenBank |
| Plaque Notes | -Plaques on my spot test were about 9.5mm in diameter -Plaques were symmetrical small circles -Clear (suggests lytic) -Consistent pattern in the different dilutions of the purification procedure -When my g.terrae lawn were richer the plaques were slightly larger -plaques are about 2 mm in size |
| Number of Genes | 74 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewParada_1 Parada_2 Parada_3 Parada_4 Parada_5 Parada_6 Parada_7 Parada_8 Parada_9 Parada_10 Parada_11 Parada_12 Parada_13 Parada_14 Parada_15 Parada_16 Parada_17 Parada_18 Parada_19 Parada_20 Parada_21 Parada_22 Parada_23 Parada_24 Parada_25 Parada_26 Parada_27 Parada_28 Parada_29 Parada_30 Parada_31 Parada_32 Parada_33 Parada_34 Parada_35 Parada_36 Parada_37 Parada_38 Parada_39 Parada_40 Parada_41 Parada_42 Parada_43 Parada_44 Parada_45 Parada_46 Parada_47 Parada_48 Parada_49 Parada_50 Parada_51 Parada_52 Parada_53 Parada_54 Parada_55 Parada_56 Parada_57 Parada_58 Parada_59 Parada_60 Parada_61 Parada_62 Parada_63 Parada_64 Parada_65 Parada_66 Parada_67 Parada_68 Parada_69 Parada_70 Parada_71 Parada_72 Parada_73 Parada_74 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK359319 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 3.0 x 10^10 |
| Date of SEA Lysate Titering | Nov 4, 2016 |
| Pitt Freezer Box# | 39 |
| Pitt Freezer Box Grid# | A11 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |