Streptomyces phage Phredrick
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Detailed Information for Phage Phredrick
Discovery Information
Isolation HostStreptomyces griseus ATCC 10137
Found ByAshley Kitch, Juli Smith, Nat Rose, Abbey Harris
Year Found2022
Location FoundCHANDLER, IN United States
Finding InstitutionUniversity of Evansville
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature20°C
GPS Coordinates38.041711 N, 87.368065 W Map
Discovery NotesThis particular phage was found in my garden, in the soil right about the brown clay layer.
Naming Notesa play on words "phage" begins with the "ph" sound and "phredrick" would be a play on that same naming system.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 4, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage770
Genome length (bp)128873
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length765 bp
GC Content47.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBK
SubclusterBK1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Evansville
Annotation StatusIn GenBank
Plaque Notesplaques for this phage have continually had both smaller sized and medium-sized plaques, after 3 rounds of purification, this was determined to just be a characteristic of the phage itself
Number of Genes238
Number of tRNAs35
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Phredrick_1

Phredrick_2

Phredrick_3

Phredrick_4

Phredrick_5

Phredrick_6

Phredrick_7
(DNA methyltransferase)

Phredrick_8

Phredrick_9
(ThyX-like thymidylate synthase)

Phredrick_10

Phredrick_11

Phredrick_12

Phredrick_13

Phredrick_14

Phredrick_15 — tRNA
(tRNA-Thr(ggt))

Phredrick_16 — tRNA
(tRNA-Thr(cgt))

Phredrick_17 — tRNA
(tRNA-Thr(tgt))

Phredrick_18 — tRNA
(tRNA-Ile(gat))

Phredrick_19

Phredrick_20
(glycosyltransferase)

Phredrick_21
(glycosyltransferase)

Phredrick_22
(ribonucleotide reductase)

Phredrick_23
(endolysin)

Phredrick_24

Phredrick_25

Phredrick_26
(portal protein)

Phredrick_27

Phredrick_28
(capsid maturation protease)

Phredrick_29
(major capsid protein)

Phredrick_30

Phredrick_31
(head-to-tail adaptor)

Phredrick_32
(head-to-tail stopper)

Phredrick_33

Phredrick_34

Phredrick_35
(major tail protein)

Phredrick_36
(tail assembly chaperone)

Phredrick_37
(tail assembly chaperone)

Phredrick_38
(tape measure protein)

Phredrick_39
(minor tail protein)

Phredrick_40
(minor tail protein)

Phredrick_41

Phredrick_42
(minor tail protein)

Phredrick_43
(minor tail protein)

Phredrick_44

Phredrick_45

Phredrick_46

Phredrick_47
(HNH endonuclease)

Phredrick_48
(phosphoesterase)

Phredrick_49

Phredrick_50

Phredrick_51
(helix-turn-helix DNA binding domain protein)

Phredrick_52

Phredrick_53

Phredrick_54

Phredrick_55
(DnaB-like dsDNA helicase)

Phredrick_56

Phredrick_57
(DNA primase)

Phredrick_58
(SSB protein)

Phredrick_59
(HNH endonuclease)

Phredrick_60
(DnaE-like DNA polymerase III alpha)

Phredrick_61

Phredrick_62
(MazG-like nucleotide pyrophosphohydrolase)

Phredrick_63

Phredrick_64
(RecA-like DNA recombinase)

Phredrick_65

Phredrick_66

Phredrick_67
(PnuC-like nicotinamide riboside transporter)

Phredrick_68
(Holliday junction resolvase)

Phredrick_69

Phredrick_70

Phredrick_71
(Cas4 exonuclease)

Phredrick_72

Phredrick_73
(RuvC-like resolvase)

Phredrick_74

Phredrick_75
(DprA-like DNA processing chain A)

Phredrick_76
(helix-turn-helix DNA binding domain protein)

Phredrick_77
(glycosyltransferase)

Phredrick_78
(glycosyltransferase)

Phredrick_79
(nucleotidyltransferase)

Phredrick_80

Phredrick_81
(DnaQ-like DNA polymerase III subunit)

Phredrick_82
(deoxynucleoside monophosphate kinase)

Phredrick_83
(5' nucleotidase)

Phredrick_84

Phredrick_85

Phredrick_86

Phredrick_87

Phredrick_88
(terminase)

Phredrick_89

Phredrick_90

Phredrick_91 — tRNA
(tRNA-Pro(tgg))

Phredrick_92 — tRNA
(tRNA-Pro(tgg))

Phredrick_93
(HNH endonuclease)

Phredrick_94

Phredrick_95 — tRNA
(tRNA-Gln(ctg))

Phredrick_96 — tRNA
(tRNA-Trp(cca))

Phredrick_97

Phredrick_98 — tRNA
(tRNA-Ile(gat))

Phredrick_99 — tRNA
(tRNA-Ser(tga))

Phredrick_100

Phredrick_101 — tRNA
(tRNA-Asp(gtc))

Phredrick_102

Phredrick_103

Phredrick_104

Phredrick_105
(Ro-like RNA binding protein)

Phredrick_106

Phredrick_107

Phredrick_108 — tRNA
(tRNA-Arg(gcg))

Phredrick_109

Phredrick_110
(DnaQ-like DNA polymerase III subunit)

Phredrick_111

Phredrick_112

Phredrick_113 — tRNA
(tRNA-Ala(tgc))

Phredrick_114

Phredrick_115 — tRNA
(tRNA-Lys(ctt))

Phredrick_116

Phredrick_117

Phredrick_118 — tRNA
(tRNA-Met(cat))

Phredrick_119 — tRNA
(tRNA-Met(cat))

Phredrick_120

Phredrick_121 — tRNA
(tRNA-Phe(gaa))

Phredrick_122

Phredrick_123

Phredrick_124

Phredrick_125

Phredrick_126 — tRNA
(tRNA-Tyr(gta))

Phredrick_127 — tRNA
(tRNA-His(gtg))

Phredrick_128

Phredrick_129 — tRNA
(tRNA-Cys(gca))

Phredrick_130 — tRNA
(tRNA-Asn(gtt))

Phredrick_131 — tRNA
(tRNA-Arg(tcg))

Phredrick_132

Phredrick_133

Phredrick_134 — tRNA
(tRNA-Arg(cct))

Phredrick_135

Phredrick_136 — tmRNA
('Tag peptide: ANSNFALAA*')

Phredrick_137

Phredrick_138
(band-7-like membrane protein)

Phredrick_139

Phredrick_140

Phredrick_141

Phredrick_142

Phredrick_143 — tRNA
(tRNA-Leu(gag))

Phredrick_144

Phredrick_145

Phredrick_146

Phredrick_147 — tRNA
(tRNA-Ser(gct))

Phredrick_148

Phredrick_149

Phredrick_150
(RNA ligase)

Phredrick_151

Phredrick_152

Phredrick_153
(polynucleotide kinase)

Phredrick_154

Phredrick_155

Phredrick_156 — tRNA
(tRNA-Leu(tag))

Phredrick_157

Phredrick_158

Phredrick_159

Phredrick_160

Phredrick_161 — tRNA
(tRNA-Val(tac))

Phredrick_162 — tRNA
(tRNA-Leu(caa))

Phredrick_163

Phredrick_164

Phredrick_165

Phredrick_166

Phredrick_167

Phredrick_168

Phredrick_169

Phredrick_170

Phredrick_171

Phredrick_172
(rIIB-like protein)

Phredrick_173

Phredrick_174
(phosphoesterase)

Phredrick_175

Phredrick_176 — tRNA
(tRNA-Lys(ttt))

Phredrick_177

Phredrick_178
(WhiB family transcription factor)

Phredrick_179

Phredrick_180

Phredrick_181

Phredrick_182 — tRNA
(tRNA-Ile(tat))

Phredrick_183

Phredrick_184

Phredrick_185

Phredrick_186 — tRNA
(tRNA-Glu(ctc))

Phredrick_187 — tRNA
(tRNA-Glu(ttc))

Phredrick_188

Phredrick_189 — tRNA
(tRNA-Gly(gcc))

Phredrick_190

Phredrick_191

Phredrick_192 — tRNA
(tRNA-Gly(tcc))

Phredrick_193

Phredrick_194 — tRNA
(tRNA-Gln(ttg))

Phredrick_195

Phredrick_196

Phredrick_197

Phredrick_198

Phredrick_199

Phredrick_200

Phredrick_201

Phredrick_202

Phredrick_203
(thioredoxin)

Phredrick_204

Phredrick_205

Phredrick_206

Phredrick_207

Phredrick_208

Phredrick_209

Phredrick_210

Phredrick_211
(RNA ligase)

Phredrick_212
(HNH endonuclease)

Phredrick_213

Phredrick_214

Phredrick_215

Phredrick_216

Phredrick_217

Phredrick_218

Phredrick_219

Phredrick_220

Phredrick_221
(Lsr2-like DNA bridging protein)

Phredrick_222

Phredrick_223

Phredrick_224

Phredrick_225

Phredrick_226

Phredrick_227

Phredrick_228

Phredrick_229
(HNH endonuclease)

Phredrick_230

Phredrick_231

Phredrick_232

Phredrick_233
(BrnT-like toxin)

Phredrick_234
(peptidase)

Phredrick_235

Phredrick_236

Phredrick_237

Phredrick_238

Phredrick_239

Phredrick_240

Phredrick_241

Phredrick_242
(HNH endonuclease)

Phredrick_243
(metallophosphoesterase)

Phredrick_244

Phredrick_245
(SprT-like protease)

Phredrick_246

Phredrick_247

Phredrick_248

Phredrick_249

Phredrick_250

Phredrick_251

Phredrick_252

Phredrick_253
(HNH endonuclease)

Phredrick_254

Phredrick_255

Phredrick_256

Phredrick_257
(kinase)

Phredrick_258

Phredrick_259

Phredrick_260

Phredrick_261

Phredrick_262

Phredrick_263

Phredrick_264

Phredrick_265

Phredrick_266

Phredrick_267

Phredrick_268

Phredrick_269

Phredrick_270

Phredrick_271

Phredrick_272

Phredrick_273

Phredrick_274

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR553903
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 160
Pitt Freezer Box Grid# D8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload