| Detailed Information for Phage Schuy | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Alexander DiGiacomo |
| Year Found | 2023 |
| Location Found | Conshohoken, PA United States |
| Finding Institution | Saint Joseph's University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 40.06936 N, 75.30401 W Map |
| Discovery Notes | The soil was collected on 1/12/23 at 1:10 pm. The sample was collected on the bank of the Schuylkill River. The collection site was just beyond the parking lot of the residence Inn by Marriot (191 Washington St, Conshohocken, PA 19428). Description of the site: enter walking path alng the parking lot, travel down the bank 3 feet from path and 10 feet from river. Soil collected on the bank slope about 2 feet from base of tree. The soil was dry, and sandy. The weather had been consistently brisk, dry, and cloudy before the date of extraction. The soil was extracted 28.2 cm down. |
| Naming Notes | The soil sample Schuy was isolated from was taken from the bank of the Schuylkill River-- a notable Pennsylvanian landmark. The phage was named after the river, shortening the name to the nickname of "Schuy". |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 19, 2023 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1317 |
| Genome length (bp) | 70853 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 4 bases |
| Overhang Sequence | GTCT |
| GC Content | 65.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | O |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | Saint Joseph's University |
| Annotation Status | Being Annotated (Expected completion by 5/1/2024) |
| Plaque Notes | Clear, 1mm plaques. 48 hr incubation period. |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSchuy_Draft_1 Schuy_Draft_2 Schuy_Draft_3 Schuy_Draft_4 Schuy_Draft_5 Schuy_Draft_6 Schuy_Draft_7 Schuy_Draft_8 Schuy_Draft_9 Schuy_Draft_10 Schuy_Draft_11 Schuy_Draft_12 Schuy_Draft_13 Schuy_Draft_14 Schuy_Draft_15 Schuy_Draft_16 Schuy_Draft_17 Schuy_Draft_18 Schuy_Draft_19 Schuy_Draft_20 Schuy_Draft_21 Schuy_Draft_22 Schuy_Draft_23 Schuy_Draft_24 Schuy_Draft_25 Schuy_Draft_26 Schuy_Draft_27 Schuy_Draft_28 Schuy_Draft_29 Schuy_Draft_30 Schuy_Draft_31 Schuy_Draft_32 Schuy_Draft_33 Schuy_Draft_34 Schuy_Draft_35 Schuy_Draft_36 Schuy_Draft_37 Schuy_Draft_38 Schuy_Draft_39 Schuy_Draft_40 Schuy_Draft_41 Schuy_Draft_42 Schuy_Draft_43 Schuy_Draft_44 Schuy_Draft_45 Schuy_Draft_46 Schuy_Draft_47 Schuy_Draft_48 Schuy_Draft_49 Schuy_Draft_50 Schuy_Draft_51 Schuy_Draft_52 Schuy_Draft_53 Schuy_Draft_54 Schuy_Draft_55 Schuy_Draft_56 Schuy_Draft_57 Schuy_Draft_58 Schuy_Draft_59 Schuy_Draft_60 Schuy_Draft_61 Schuy_Draft_62 Schuy_Draft_63 Schuy_Draft_64 Schuy_Draft_65 Schuy_Draft_66 Schuy_Draft_67 Schuy_Draft_68 Schuy_Draft_69 Schuy_Draft_70 Schuy_Draft_71 Schuy_Draft_72 Schuy_Draft_73 Schuy_Draft_74 Schuy_Draft_75 Schuy_Draft_76 Schuy_Draft_77 Schuy_Draft_78 Schuy_Draft_79 Schuy_Draft_80 Schuy_Draft_81 Schuy_Draft_82 Schuy_Draft_83 Schuy_Draft_84 Schuy_Draft_85 Schuy_Draft_86 Schuy_Draft_87 Schuy_Draft_88 Schuy_Draft_89 Schuy_Draft_90 Schuy_Draft_91 Schuy_Draft_92 Schuy_Draft_93 Schuy_Draft_94 Schuy_Draft_95 Schuy_Draft_96 Schuy_Draft_97 Schuy_Draft_98 Schuy_Draft_99 Schuy_Draft_100 Schuy_Draft_101 Schuy_Draft_102 Schuy_Draft_103 Schuy_Draft_104 Schuy_Draft_105 Schuy_Draft_106 Schuy_Draft_107 Schuy_Draft_108 Schuy_Draft_109 Schuy_Draft_110 Schuy_Draft_111 Schuy_Draft_112 Schuy_Draft_113 Schuy_Draft_114 Schuy_Draft_115 Schuy_Draft_116 Schuy_Draft_117 Schuy_Draft_118 Schuy_Draft_119 Schuy_Draft_120 Schuy_Draft_121 Schuy_Draft_122 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 166 |
| Pitt Freezer Box Grid# | F10 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |