| Detailed Information for Phage Vagabond |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Anthony Garcia |
| Year Found | 2024 |
| Location Found | Philadelphia, PA United States |
| Finding Institution | Lehigh University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.604836 N, 75.378385 W Map |
| Discovery Notes | The dirt was wet, an estimate of 2 inches deep. Organic matter was in the soil. The ambient temperature was very cold as well as the dirt itself. Had snow in it as well which melted later on. |
| Naming Notes | From a manga(Japanese comic) |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 23, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 4628 |
| Genome length (bp) | 70854 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 4 bases |
| Overhang Sequence | GTGT |
| GC Content | 65.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | O |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Lehigh University |
| Annotation Status | Being Annotated (Expected completion by 1/23/2025) |
| Morphotype | Siphoviridae |
| Number of Genes | 121 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Publication Info |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Not in Pitt Archives |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
