Microbacterium phage Coltrane
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Detailed Information for Phage Coltrane
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224 SEA
Found ByKerry Iles
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.444253 N, 79.953239 W Map
Naming NotesNamed after John Coltrane
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 20, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage664
Genome length (bp)39828
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceACTCCCGGCA
GC Content67.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEB
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesPlaques are primarily clear and 3 mm in diameter with intermittent pinpoint plaques.
Has been Phamerated?Yes
Gene List

Click to View

Coltrane_1
(terminase, small subunit)

Coltrane_2
(terminase large subunit)

Coltrane_3
(portal protein)

Coltrane_4
(capsid maturation protease)

Coltrane_5
(major capsid protein)

Coltrane_6

Coltrane_7
(head-to-tail adaptor)

Coltrane_8
(head-to-tail stopper)

Coltrane_9

Coltrane_10
(tail terminator)

Coltrane_11
(major tail protein)

Coltrane_12
(tail assembly chaperone)

Coltrane_13
(tail assembly chaperone)

Coltrane_14
(toxin in toxin/antitoxin system, HicA-like)

Coltrane_15
(tape measure protein)

Coltrane_16
(minor tail protein)

Coltrane_17
(minor tail protein)

Coltrane_18
(minor tail protein)

Coltrane_19
(minor tail protein)

Coltrane_20
(Lysin A)

Coltrane_21

Coltrane_22
(Membrane Protein)

Coltrane_23

Coltrane_24

Coltrane_25
(exonuclease)

Coltrane_26

Coltrane_27
(toxin in toxin/antitoxin system, HicA-like)

Coltrane_28
(MazG-like nucleotide phyrophosphohydrolase)

Coltrane_29
(thymidylate kinase)

Coltrane_30

Coltrane_31

Coltrane_32

Coltrane_33
(thioredoxin)

Coltrane_34
(holliday junction resolvase)

Coltrane_35

Coltrane_36

Coltrane_37

Coltrane_38

Coltrane_39
(DNA primase)

Coltrane_40
(DNA polymerase 1)

Coltrane_41

Coltrane_42

Coltrane_43
(DNA directed RNA polymerase subunit alpha)

Coltrane_44

Coltrane_45
(SprT-like domain)

Coltrane_46

Coltrane_47

Coltrane_48

Coltrane_49
(HNH endonuclease)

Coltrane_50

Coltrane_51

Coltrane_52

Coltrane_53

Coltrane_54

Coltrane_55

Coltrane_56
(thymidylate synthase)

Coltrane_57

Coltrane_58

Coltrane_59
(thymidylate synthase)

Coltrane_60

Coltrane_61

Coltrane_62

Coltrane_63

Coltrane_64

Coltrane_65

Coltrane_66

Coltrane_67

Coltrane_70
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH834604
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload