Mycobacterium phage Yoshi
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Detailed Information for Phage Yoshi
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByR. Dillon Davis
Year Found2009
Location FoundMonroe, LA USA
Finding InstitutionUniversity of Louisiana at Monroe
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates32.609697 N, 92.377981 W Map
Discovery NotesSoil, depth 3 cm, in a manure/compost pile.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 17, 2011
Sequencing FacilityJoint Genomics Institute
Shotgun Sequencing MethodSanger Sequencing
Genome length (bp)58714
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
GC Content61.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF2
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque NotesLytic/lysogenic
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes116
Has been Phamerated?Yes
Gene List

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Yoshi_1
(HNH endonuclease domain)

Yoshi_2
(terminase, small subunit)

Yoshi_3
(terminase, large subunit)

Yoshi_4
(portal)

Yoshi_5
(protease)

Yoshi_6
(scaffolding)

Yoshi_7
(capsid)

Yoshi_8

Yoshi_9

Yoshi_10

Yoshi_11

Yoshi_12

Yoshi_13

Yoshi_14
(major tail subunit)

Yoshi_15
(tail assembly chaperone)

Yoshi_16
(tail assembly chaperone (G/T -1 frameshift))

Yoshi_17
(tapemeasure)

Yoshi_18
(structural protein)

Yoshi_19
(structural protein)

Yoshi_20

Yoshi_21

Yoshi_22

Yoshi_23

Yoshi_24
(structural protein)

Yoshi_25
(structural protein)

Yoshi_26
(structural protein)

Yoshi_27

Yoshi_28
(transcriptional regulator (AlpA-like))

Yoshi_29

Yoshi_30

Yoshi_31

Yoshi_32

Yoshi_33

Yoshi_34

Yoshi_35

Yoshi_36

Yoshi_37
(Lysin A)

Yoshi_38
(Lysin B)

Yoshi_39

Yoshi_40

Yoshi_41

Yoshi_42

Yoshi_43

Yoshi_44

Yoshi_45

Yoshi_46

Yoshi_47

Yoshi_48

Yoshi_49

Yoshi_50

Yoshi_51

Yoshi_52

Yoshi_53

Yoshi_54
(integrase, tyrosine)

Yoshi_55

Yoshi_56

Yoshi_57

Yoshi_58

Yoshi_59

Yoshi_60
(antirepressor)

Yoshi_61

Yoshi_62

Yoshi_63

Yoshi_64

Yoshi_65

Yoshi_66

Yoshi_67

Yoshi_68

Yoshi_69
(WhiB)

Yoshi_70
(HTH-DNA binding)

Yoshi_71

Yoshi_72
(WhiB)

Yoshi_73
(HTH DNA-binding)

Yoshi_74

Yoshi_75

Yoshi_76

Yoshi_77

Yoshi_78

Yoshi_79
(AAA ATPase)

Yoshi_80

Yoshi_81
(HNH endonuclease domain)

Yoshi_82

Yoshi_83

Yoshi_84

Yoshi_85
(DNA methylase)

Yoshi_86

Yoshi_87
(HNH endonuclease domain)

Yoshi_88

Yoshi_89

Yoshi_90

Yoshi_91

Yoshi_92

Yoshi_93

Yoshi_94

Yoshi_95

Yoshi_96

Yoshi_97

Yoshi_98

Yoshi_99

Yoshi_100

Yoshi_101

Yoshi_102

Yoshi_103

Yoshi_104

Yoshi_105

Yoshi_106

Yoshi_107

Yoshi_108

Yoshi_109

Yoshi_110

Yoshi_111

Yoshi_112
(transcriptional regulator (AlpA-like))

Yoshi_113

Yoshi_114
(Glycosyl transferase)

Yoshi_115
(Galactosyl transferase)

Yoshi_116
(Glycosyl transferase)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJF704115
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Virtual Digest PictureDownload
EM PictureDownload