Microbacterium phage Crisis
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Detailed Information for Phage Crisis
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByEthan Wang
Year Found2023
Location FoundRiverside, CA United States of America
Finding InstitutionLa Sierra University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature17°C
GPS Coordinates33.9116 N, 117.50198 W Map
Discovery NotesDamp soil, ~ 1 inch deep, wood chips, leaf litter, mulch
Naming NotesThe process of obtaining this phage was quite a crisis.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 3, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage90
Genome length (bp)52987
Character of genome endsCircularly Permuted
GC Content68.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEC
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionLa Sierra University
Annotation StatusQC Complete
Plaque Notes~ 1 mm, defined border, clear plaques
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Crisis_1
(terminase, small subunit)

Crisis_2

Crisis_3
(terminase, large subunit)

Crisis_4

Crisis_5

Crisis_6

Crisis_7

Crisis_8

Crisis_9

Crisis_10

Crisis_11

Crisis_12

Crisis_13

Crisis_14

Crisis_15

Crisis_16

Crisis_17

Crisis_18

Crisis_19

Crisis_20

Crisis_21
(portal protein)

Crisis_22

Crisis_23

Crisis_24

Crisis_25

Crisis_26
(capsid maturation protease)

Crisis_27

Crisis_28
(major capsid hexamer protein)

Crisis_29
(major capsid pentamer protein)

Crisis_30

Crisis_31
(major tail protein)

Crisis_32
(head-to-tail adaptor)

Crisis_33

Crisis_34

Crisis_35
(tail assembly chaperone)

Crisis_36

Crisis_37
(tape measure protein)

Crisis_38
(minor tail protein)

Crisis_39
(minor tail protein)

Crisis_40
(minor tail protein)

Crisis_41
(minor tail protein)

Crisis_42

Crisis_43

Crisis_44
(endolysin)

Crisis_45

Crisis_46

Crisis_47

Crisis_48

Crisis_49
(exonuclease)

Crisis_50
(ERF family DNA pairing protein)

Crisis_51

Crisis_52

Crisis_53
(helix-turn-helix DNA binding domain)

Crisis_54
(ADP-ribosyltransferase)

Crisis_55
(HNH endonuclease)

Crisis_56

Crisis_57

Crisis_58

Crisis_59

Crisis_60
(helix-turn-helix DNA binding domain)

Crisis_61

Crisis_62

Crisis_63

Crisis_64

Crisis_65
(SSB protein)

Crisis_66

Crisis_67
(helix-turn-helix DNA binding domain)

Crisis_68
(helix-turn-helix DNA binding domain)

Crisis_69

Crisis_70

Crisis_71

Crisis_72

Crisis_73

Crisis_74

Crisis_75

Crisis_76

Crisis_77

Crisis_78

Crisis_79

Crisis_80

Crisis_81

Crisis_82

Crisis_83
(DNA binding protein)

Crisis_84
(ParB-like nuclease domain)

Crisis_85
(glycosyltransferase)

Crisis_86
(UDP-glucose dehydrogenase)

Crisis_87
(AAA-ATPase)

Crisis_88

Crisis_89

Crisis_90

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 168
Pitt Freezer Box Grid# B9
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload