Phage List
Detailed Phage Information
Access detailed information about all phages, or about a particular phage (given its name).
GET /api/phages/?format=api&page=27
{ "count": 28923, "next": "https://phagesdb.org/api/phages/?format=api&page=28", "previous": "https://phagesdb.org/api/phages/?format=api&page=26", "results": [ { "phage_name": "KaylaPaige01", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Patricia Richardson", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.762897 N", "found_GPS_long": "97.407611 W", "found_year": 2011, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "Actual Average Record\r\nTemperature\r\nMean Temperature 88 °F 84 °F\r\nMax Temperature 102 °F 93 °F 102 °F (2005)\r\nMin Temperature 73 °F 75 °F 69 °F (1992)\r\nDegree Days\r\nHeating Degree Days 0 0\r\nMonth to date heating degree days 0 0\r\nSince 1 June heating degree days 0 0\r\nSince 1 July heating degree days 0 0\r\nCooling Degree Days 23 19\r\nMonth to date cooling degree days 671 575\r\nYear to date cooling degree days 2970 2525\r\nSince 1 June cooling degree days 1893 1684\r\nGrowing Degree Days 36 (Base 50)\r\nMoisture\r\nDew Point 69 °F\r\nAverage Humidity 57\r\nMaximum Humidity 87\r\nMinimum Humidity 26\r\nPrecipitation\r\nPrecipitation 0.00 in 0.15 in 2.90 in (1946)\r\nMonth to date precipitation 0.28 2.61\r\nYear to date precipitation 7.80 19.03\r\nSnow\r\nSnow 0.00 in - - ()\r\nMonth to date snowfall 0.0\r\nSince 1 June snowfall 0.0\r\nSince 1 July snowfall 0.0\r\nSnow Depth 0.00 in\r\nSea Level Pressure\r\nSea Level Pressure 29.82 in\r\nWind\r\nWind Speed 8 mph (SSE)\r\nMax Wind Speed 16 mph\r\nMax Gust Speed 23 mph\r\nVisibility 10 miles\r\nEvents\r\nT = Trace of Precipitation, MM = Missing Value Source: NWS Daily Summary\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KaylaPaige01_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KaylaPaige01_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-12-05T16:24:15-05:00", "date_modified": "2017-09-22T12:31:42-04:00" }, { "phage_name": "Kaylee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name I chose was Kaylee, Kaylee is my middle name. I don't usually use my middle name because I personally didn't like it but I'm starting to like it due to the fact is means \"crown\" and also because it reminds me of how everything I've been through and how I still am a positive, happy, outgoing person.", "finder_name": "Alyana Gonel", "found_city": "Blauvelt", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "41.0554 N", "found_GPS_long": "73.95303 W", "found_year": 2022, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "The sample I chose was soil in front of Guzman Hall, the day before it snowed, so the ground was hard, to get the soil damp I took my foot removed the top soil and scooped the soil with the 50mL conical tubes that my teacher gave us and put 25mL of the soil", "isolation_temperature": 6, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The average size of the plaque's was 0.57mm\r\nThe plaques were clear and small \r\nThe majority of the plaques are spread apart", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaylee_Plaque.heic", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-02-28T09:36:25-05:00", "date_modified": "2022-02-28T09:36:25-05:00" }, { "phage_name": "Kaylemma", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We picked this name because it is our names, Emma and Kayleigh, mixed together.", "finder_name": "Emma Horton and Kayleigh Evans", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66653 N", "found_GPS_long": "117.4048 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "By Lake Arthur at Gonzaga University. It was collected at the shoreline. Rainy, stormy day. The soil was moist.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear and halos. About 6 mm in diameter. Clusters.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaylemma_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kaylemma_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kaylemma_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KEEH_3_3.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/C4.jpg", "dnam_file": null, "date_added": "2022-04-12T11:31:18-04:00", "date_modified": "2024-02-25T15:28:09-05:00" }, { "phage_name": "Kaylissa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a mixture of the names of the people who found the phage. Melissa + Kaylah = Kaylissa.", "finder_name": "Melissa Kamruzzaman, Kaylah Dewar", "found_city": "Old Westbury", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "40.7887 N", "found_GPS_long": "73.5996 W", "found_year": 2019, "p_institution": { "institution_code": "NYIT", "institution_name": "New York Institute of Technology", "institution_logo": "https://phagesdb.org/media/institutions/newyorkIT.png", "institution_url": "", "institution_city": "Old Westbury", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The discovery was made on the New York institute campus. It was a sunny day with little wind. The sample was collected from dry soil nearby a tree.", "isolation_temperature": 77, "growth_notes": "", "pcluster": { "cluster": "AZ", "temperate": true }, "psubcluster": { "subcluster": "AZ1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques had a consistent circular shape, but the sizes varied. The plaques also seemed to have a bullseye.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-08-07", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2171, "finishing_reactions": 0, "genome_length": 44124, "gcpercent": "67.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGAAGGGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 71, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kaylissa_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kaylissa_Minimal_Final_ouIzywf.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kaylissa_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kaylissa_CoverSheet.pdf", "submitted_annotation_date": "2021-04-19T13:57:17-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kaylissa.gbf", "qced_genbank_file_date": "2021-04-19T13:57:17-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ005682", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaylissa_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/Kaylissa_EMPic_ZgBmhLC.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kaylissa.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kaylissa_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kaylissa_EMPic_Thumb.png", "dnam_file": null, "date_added": "2019-12-05T09:04:31-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kaylyn", "old_names": "Lolly", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Resembles a lollipop", "finder_name": "Kaylyn Galie", "found_city": "Flourtown", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.119444 N", "found_GPS_long": "75.215 W", "found_year": 2019, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": null, "discovery_notes": "Found in a grassy area near trees", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "atrocyaneus", "strain_name": "NRRL B-2883", "strain_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-09T22:59:20-05:00", "date_modified": "2021-01-28T11:04:04-05:00" }, { "phage_name": "Kayman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Khandase B. Tate", "found_city": "New Orleans", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "29.940693 N", "found_GPS_long": "90.124204 W", "found_year": 2011, "p_institution": { "institution_code": "XAVU", "institution_name": "Xavier University of Louisiana", "institution_logo": "https://phagesdb.org/media/institutions/Xavier-University-of-Louisiana.jpg", "institution_url": "http://www.xula.edu/", "institution_city": "New Orleans", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "29.964843", "institution_longitude": "-90.10674" }, "enriched_sample": true, "discovery_notes": "Compost\n3cm\n70 degrees Fahrenheit\nSoil came from a compost pile in the backyard of a house\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque was very small no bigger than 3mm in diameter and no smaller than 1mm ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-30T04:16:09-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "KayMel", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We combined our names in order to create our phage name.", "finder_name": "Melissa Tabakci - Kayla Perrapato", "found_city": "Rutherford", "found_state": "NJ", "found_country": "United States", "found_GPS_lat": "40.82171 N", "found_GPS_long": "74.11589 W", "found_year": 2024, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "The phage was found on a rainy day around 9pm. It was a cool/dark area by tree roots. It was 40 degrees Celcius when we found it.", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were frequently consistent with the same small, round circular results each week. The plaques look like small puncture marks made by a needle.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KayMel_Plaque.HEIC", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-22T10:17:39-04:00", "date_modified": "2024-04-22T10:17:39-04:00" }, { "phage_name": "KayMoney", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kealana Keanaaina and Happy Sabiti", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66678 N", "found_GPS_long": "117.40408 W", "found_year": 2024, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "FA", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-07-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 6401, "finishing_reactions": 0, "genome_length": 43045, "gcpercent": "65.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGAGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 67, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KayMoney_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-08-05T14:51:47-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KayMoney_flat.txt", "qced_genbank_file_date": "2025-08-05T14:51:47-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PX121524", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KayMoney_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/KayMoney_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KayMoney.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KayMoney_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-03-27T10:24:07-04:00", "date_modified": "2025-09-15T16:09:02-04:00" }, { "phage_name": "Kayne2", "old_names": "Kayne", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's my middle name and was found in my yard", "finder_name": "Devin Bourque", "found_city": "Abbeville", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "30.033 N", "found_GPS_long": "92.1052 E", "found_year": 2017, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": true, "discovery_notes": "Ditch in the front yard", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kayne2_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kayne2_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-09-22T12:32:31-04:00", "date_modified": "2020-09-17T14:08:43-04:00" }, { "phage_name": "Kayo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named for a friend of Bogdan.", "finder_name": "Bogdan Domrachev, Sung Yeon Lim", "found_city": "Columbia", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.174496 N", "found_GPS_long": "76.844736 W", "found_year": 2018, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "The soil sample was taken from moist topsoil under a tree, with a external temperature of 71F. ", "isolation_temperature": 28, "growth_notes": "", "pcluster": { "cluster": "Singleton", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are circular and vary from 2-5mm following a 24 hour incubation period. The edges are rough, and the inside of the plaque is clear. ", "lysogeny_notes": "Experiments performed suggest that the phage is lytic.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/plaque_200x200_TeVyL0O.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kayo_200x200_TEM.jpg", "dnam_file": null, "date_added": "2018-09-28T12:15:00-04:00", "date_modified": "2020-09-17T14:10:09-04:00" }, { "phage_name": "Kayo215", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage is inspired by myself. The 'KayO' corresponds the sound of the first letter of my name and the 'O' is the first letter of my last name. And the numbers of correspond to my high school graduation year. ", "finder_name": "Kerry Owusu", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44447 N", "found_GPS_long": "79.956215 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Soil Sample was moist and cold \r\nWeather conditions 24 hours prior to obtaining soil sample \r\n- 57.2 degrees Fahrenheit \r\n- Wind 4.2 mph \r\n- light rain \r\nWeather conditions at time of collection \r\n- 31 degrees Fahrenheit \r\n- Winds out of the West 19 mph \r\n- snowing ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The phage shows various plaque morphology, approximately three different plaque sizes. The plaques have a round, circular, shape. The size of the plaques are approximately 1mm, .65mm, and .35mm large. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kayo215_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kayo215_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kayo215_Digest.jpg", "vdigest_file": "https://phagesdb.org/media/vDigestPics/Kayo215_VirtualDigest.jpg", "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kayo215_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kayo215_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-03-21T15:37:10-04:00", "date_modified": "2020-07-27T14:35:21-04:00" }, { "phage_name": "KayPaulus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is my middle name and last name.", "finder_name": "Baily Paulus", "found_city": "Somerset", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "45.10031 N", "found_GPS_long": "92.631587 W", "found_year": 2017, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "It was collected on Sunday, September 10, 2017 at 7:10pm.The temperature was 70 degrees Fahrenheit and it was cloudy out. It was extracted from the lawn right next to a driveway. There is little grass or weeds there. The soil sample was dry. It was extracted with a tongue depressor to loosen up soil. It was taken from 40 millimeter below the surface and above. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "There was little and big plaques. Both with halos and turbid. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-03-07", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1876, "finishing_reactions": 0, "genome_length": 17455, "gcpercent": "68.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KayPaulus_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-05-20T10:43:46-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KayPaulus_flat.txt", "qced_genbank_file_date": "2018-05-20T10:43:46-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH371118", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KayPaulus_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KayPaulus_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/KayPaulus_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KayPaulus.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KayPaulus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KayPaulus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-08T16:12:39-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "KayPee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kettle Point is often called KP among the residents. So, I just extended that into KayPee to pay homage to where I collected the soil.", "finder_name": "Elijah Van Dinther", "found_city": "Kettle Point First Nation", "found_state": "", "found_country": "Canada", "found_GPS_lat": "43.200365 N", "found_GPS_long": "82.022133 W", "found_year": 2022, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found on the Powwow grounds underneath the bleachers next to the small pavilion.", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "coelicolor", "strain_name": "M145", "strain_species": { "id": 7, "genus": "Streptomyces", "species_name": "coelicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 7, "genus": "Streptomyces", "species_name": "coelicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KayPee_Plaque_wBqZr8v.png", "em_file": "https://phagesdb.org/media/emPics/KayPee_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-10T09:20:00-04:00", "date_modified": "2024-02-25T15:27:56-05:00" }, { "phage_name": "Kayton", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Kira Zack", "found_city": "Suscon", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "41.219722 N", "found_GPS_long": "75.631389 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are small and turbid.", "lysogeny_notes": "Kayton does not make lysogens.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "Upon sequencing, this phage was found to be 100% identical to Poushou.", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Corynebacterium", "species": "vitaeruminis", "strain_name": "CAG1", "strain_species": { "id": 17, "genus": "Corynebacterium", "species_name": "vitaeruminis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Derived from NCIB9291, but without the prophage in it." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 17, "genus": "Corynebacterium", "species_name": "vitaeruminis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kayton_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kayton_EMPic_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kayton_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-05-14T10:46:26-04:00", "date_modified": "2021-06-24T13:57:41-04:00" }, { "phage_name": "Kayvilene", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a mashup of the 3 discoverers' names: Kayla, Viola, and Jailene.", "finder_name": "Viola Nguyen, Kayla Heine, and Jailene Gonzalez", "found_city": "Northampton", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.3155 N", "found_GPS_long": "72.6395 W", "found_year": 2019, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "We collected 1 soil sample from Smith College campus on 10/1/2019 between 1:10pm and 1:30pm The weather was cloudy, and the temperature was 68 degrees F. \r\n\r\nThe soil sample was collected near the waterfall, close to the bushes. It was collected approximately 5cm deep. Soil was sandy and dark in color, there was a tree root that was in the way of collecting the sample.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are large and cloudy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-29T22:01:01-04:00", "date_modified": "2019-10-29T22:01:01-04:00" }, { "phage_name": "KayWhit", "old_names": "Beaver (locally)", "program": { "short_name": "MT_BRIC", "program_name": "Montana Tech Bringing Research Into the Classroom ", "program_blurb": "", "program_URL": "" }, "naming_notes": "-the name ‘KayWhit’ was chosen as a shortened version of Keith Whitley, my favorite country artist\r\n-the phage was discovered in 2006 by Dezerey Heinz, and Madison Skeel adopted it for analysis in September of 2024", "finder_name": "Deserey Hines from East Middle School", "found_city": "Butte", "found_state": "MT", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2006, "p_institution": { "institution_code": "MTEC", "institution_name": "Montana Technological University", "institution_logo": "https://phagesdb.org/media/institutions/mtechlogo.png", "institution_url": "http://www.mtech.edu/", "institution_city": "Butte", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "46.012558", "institution_longitude": "-112.5576" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KayWhit_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KayWhit_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-03T13:38:23-05:00", "date_modified": "2024-12-11T10:55:12-05:00" }, { "phage_name": "Kazan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This summer I spent 45 days paddling Northern Canada and we spent the majority of that time on a river name \"The Kazan\" or \"HarVaqTuuq\" in Inuktitut.", "finder_name": "Tess Kelley", "found_city": "Bloomington", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "40.49225 N", "found_GPS_long": "88.99425 W", "found_year": 2012, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": true, "discovery_notes": "Soil sample collected approximately five feet away from the base of a pine tree in a grassy area. The soil was dark in color and taken from a depth of 1.4 cm. The temperature was 75 degrees Fahrenheit. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A6" }, "morphotype": "SIPHO", "plaque_notes": "Two morphologies:\r\n1) The larger morphology is around 2.9mm and has a turbid outer rim with a clear center after incubation for 24 hours at 32 degrees Celsius. After 42 hours they are now 5.0 mm with a “bull’s eye” pattern, alternating between clear and turbid. The centers are turbid, then clear, then turbid, then clear, then a turbid outer ring\r\n2) The smaller morphology is less than 0.1 mm after 24 hours of incubation at 32 degrees Celsius. After 42 hours the morphology is identical to that of the larger morphology after only 24 hours of incubation (~3mm with a turbid outer rim and clear center).\r\n", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-01-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": 550, "finishing_reactions": 2, "genome_length": 52160, "gcpercent": "61.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 101, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kazan_Final.dnam5", "submitted_minimal_dnam_file": null, "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kazan_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kazan_CoverSheet.txt", "submitted_annotation_date": "2014-05-14T10:25:16-04:00", "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KU985096", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kazan_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kazan_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kazan.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kazan_Plaque_Thumbs_1.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Kazan_gb.dnam5", "date_added": "2012-11-19T08:37:57-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kazi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is my mother’s maiden name and means leader in Pakistan.", "finder_name": "Adam Soomro", "found_city": "Frisco", "found_state": "TX", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2021, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Soil collection in my backyard near some bushes were the soil was lose. Collected soil from in North Western Frisco, Texas. The temperature was about 56 degrees F and it was 41% humid. The soil was dry and tough on top and dense and moist underneath the top layer. The soil sample was collected from topsoil roughly half an inch into the soil. The location is on the edge of a cemented patio in the backyard of a student. I dug about the top 1 inch of soil and placed in a plastic bag.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plaques were clear and circular with an avg diameter of 2.5 mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kazi_Plaque_GRrnmEi", "em_file": "https://phagesdb.org/media/emPics/Kazi_EMPic_vDvzuRt.png", "digest_file": "https://phagesdb.org/media/digestPics/Kazi_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kazi_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-03-29T11:54:10-04:00", "date_modified": "2025-09-04T14:58:14-04:00" }, { "phage_name": "KazMor", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the first three letters of our last name", "finder_name": "Tracy Morel and Antonia Kaz ", "found_city": "Montclair", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.8259 N", "found_GPS_long": "74.209 W", "found_year": 2016, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KazMor_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KazMor_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-06-07T11:03:01-04:00", "date_modified": "2020-09-17T14:07:50-04:00" }, { "phage_name": "Kazooie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's from a video", "finder_name": "Ashley Hawkins, Rebecca Quackenbush", "found_city": "Monroe", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.54 N", "found_GPS_long": "92.1136 W", "found_year": 2018, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": true, "discovery_notes": "From loose soil in backyard that frequently floods", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "very small, turbid plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-08T22:02:12-05:00", "date_modified": "2020-09-17T14:09:53-04:00" }, { "phage_name": "Kbarbecute", "old_names": "", "program": null, "naming_notes": "Our phage was named Kbarbecute because it was collected from across an all you can eat KBBQ restaurant. We also thought it was a cute pun.", "finder_name": "Maggie Han", "found_city": "Los Angeles", "found_state": "CA", "found_country": "US", "found_GPS_lat": "34.063767 N", "found_GPS_long": "118.306428 W", "found_year": 2022, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Phage Kbarbecute was isolated from soil, collected on 3/29/22 by Maggie Han at a depth of about 2 cm from the bushes across to Hae Jang Chon AYCE KBBQ. The sample was dry and temperature at collection time was 15℃.\r\n\r\nKbarbecute was isolated by enriched isolation in 200 mM CaCl2 cation on 20mM CaCl2 plates\r\n\r\nWet lab characterization was performed by Team Phage-alicious (Maggie Han, Trinity Vu, Daniel Chen, Brandon Chew)\r\n\r\nMIMG103AL-S22\r\nInstructor: Dr. Amanda Frise\r\nTeaching Assistant: Dominic Garza\r\nUndergraduate Assistants: Christopher Charton and Manar Abuwarda\r\nLaboratory Director: Dr. Krisanavane Reddi", "isolation_temperature": 35, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid during enriched isolation. \r\nDuring both purification assays and the titering plaque assays, it was a halo morphology. \r\nDuring MIDI lysate, it returned to a turbid morphology.\r\n\r\nAverage 3mm; ranged between 2-5 mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-06-13T15:22:23-04:00", "date_modified": "2024-02-25T15:27:58-05:00" }, { "phage_name": "KBG", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "N. Pannunzio", "found_city": "Kentucky", "found_state": "", "found_country": "USA", "found_GPS_lat": "38.000491 N", "found_GPS_long": "84.545288 W", "found_year": 2003, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2008-05-22", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "Sanger", "method_name": "Sanger" }, "coverage": null, "finishing_reactions": null, "genome_length": 53572, "gcpercent": "63.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "EU744248", "refseq_accession": "NC_011019", "plaque_file": "https://phagesdb.org/media/plaquePics/KBG_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KBG.tif", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Restriction_Map_of_Mycobacterium_phage_KBGa.jpg", "fasta_file": "https://phagesdb.org/media/fastas/KBG.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KBG_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KBG_EM_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kbmars", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Caleb Manu", "found_city": "Farmville", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.24 N", "found_GPS_long": "78.45 W", "found_year": 2020, "p_institution": { "institution_code": "HMSD", "institution_name": 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"old_names": "Sassafrass", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Klara Messersmith and Polly Karpushkina", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.729361 N", "found_GPS_long": "117.165056 W", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": -4, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-05T08:48:28-05:00", "date_modified": "2020-04-30T04:41:45-04:00" }, { "phage_name": "KCsChild", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Karly Casey", "found_city": "Birmingham", "found_state": "AL", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "UALB", "institution_name": "University of Alabama at Birmingham", "institution_logo": "https://phagesdb.org/media/institutions/uab-01.jpg", "institution_url": "http://www.uab.edu/", "institution_city": "Birmingham", "institution_state": "AL", "institution_country": "USA", "institution_latitude": "33.496744", "institution_longitude": "-86.80949" }, "enriched_sample": null, "discovery_notes": "Discovered in the sewage of the Jefferson County Sewer Treatment Plant", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Corynebacterium", "species": "vitaeruminis", "strain_name": "NCIB 9291", "strain_species": { "id": 17, "genus": "Corynebacterium", "species_name": "vitaeruminis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10234", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 17, "genus": "Corynebacterium", "species_name": "vitaeruminis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-19T12:39:29-04:00", "date_modified": "2020-09-17T14:07:06-04:00" }, { "phage_name": "KDaddy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It involved a pun with my first name initial. It was for humorous purposes. K is my initial and Daddy represents the fact that reproduction of viral cells to form plaques is from a source or daddy.", "finder_name": "Karthik Madhira", "found_city": "Hauppauge", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "SUOW", "institution_name": "SUNY Old Westbury", "institution_logo": "https://phagesdb.org/media/institutions/SUNYOldWestbury.png", "institution_url": "https://www.oldwestbury.edu/", "institution_city": "Old Westbury", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.782786", "institution_longitude": "-73.57952" }, "enriched_sample": true, "discovery_notes": "Sample was collected at highly fertilized soil near Rosa caninae plant", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Perfectly circular plaques with a diameter of 4.5mm and a titer of 4.5 X 10^8 PFU/mL. The DNA concentration was not found on time.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-19T11:40:07-05:00", "date_modified": "2020-09-17T14:09:18-04:00" }, { "phage_name": "Kdizzle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kdizzle was a nickname from high school\r\nK was for Karen and D was for Duarte which is my last name", "finder_name": "Kaylyn Vasquez", "found_city": "Bronx", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "40.818433 N", "found_GPS_long": "73.87965 W", "found_year": 2021, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "soundview park, 825 Morrison ave, Bronx,\r\nfound at 4:09 p.m", "isolation_temperature": 77, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "there were 44 plaques\r\nthey were medium size and clear\r\nthe phages ranged from 1-3 millimeters.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kdizzle_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-27T12:38:46-04:00", "date_modified": "2021-12-01T15:21:42-05:00" }, { "phage_name": "KDot", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Aylin Noble Ramirez and Ronit Kumar", "found_city": "Benton", "found_state": "ME", "found_country": "United States", "found_GPS_lat": "44.62003 N", "found_GPS_long": "69.57505 W", "found_year": 2023, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KDot_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/KDot_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/KDot_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-20T09:34:33-04:00", "date_modified": "2024-02-25T15:28:35-05:00" }, { "phage_name": "Kdrizzy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kiara Johnson", "found_city": "Longview", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.46707 N", "found_GPS_long": "94.726557 W", "found_year": 2017, "p_institution": { "institution_code": "LETO", "institution_name": "LeTourneau University", "institution_logo": "https://phagesdb.org/media/institutions/LeTourneau.png", "institution_url": "http://www.letu.edu/", "institution_city": "Longview", "institution_state": "TX", "institution_country": "United States", "institution_latitude": "32.466083", "institution_longitude": "-94.72640" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kdrizzy_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kdrizzy_EM_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-10T11:51:54-04:00", "date_modified": "2020-09-17T14:08:42-04:00" }, { "phage_name": "Kdsaurus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is my initials (KDS) and aurus added because I like dinosaurs.", "finder_name": "Katelyn Shook", "found_city": "Dahlonega", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "34.52671 N", "found_GPS_long": "83.984696 W", "found_year": 2016, "p_institution": { "institution_code": "UNGA", "institution_name": "University of North Georgia", 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diameter plaques\r\n•\tVery smooth on edges of plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keb92_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Keb92_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Keb92_Digest_azI7vt0.png", "vdigest_file": "https://phagesdb.org/media/vDigestPics/Keb92_VirtualDigest.png", "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keb92_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Keb92_EMPic_Thumb.png", "dnam_file": null, "date_added": "2021-04-19T09:29:02-04:00", "date_modified": "2022-03-16T11:02:32-04:00" }, { "phage_name": "Kebab", "old_names": "TailfiberTim", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "An EM photo taken displayed a tail fiber extending from the tail of a phage, and so I named it accordingly.\r\n\r\nAs that name was rejected, I named the phage \"Kebab\" as the phage morphology resembled the food.", "finder_name": "Josephine Crosthwait", "found_city": "Los Angeles", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "34.022562 N", "found_GPS_long": "118.281188 W", "found_year": 2023, "p_institution": { "institution_code": "USOC", "institution_name": "University of Southern California", "institution_logo": "https://phagesdb.org/media/institutions/usc.png", "institution_url": "https://www.usc.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil sample was damp and collected from a garden on the outskirts of the USC gates.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear, medium size plaques with slightly hazy edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/TailfiberTim_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kebab_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Kebab_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-20T14:41:44-05:00", "date_modified": "2024-02-25T15:28:30-05:00" }, { "phage_name": "Kebs", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I attend a college far from home and was able to get a host family. Over the past few years I have become extremely close with them. I obtained the soil sample from their backyard garden and decided to choose a name that represents them. KEBS is an acronym for the names of their children.", "finder_name": "Lauren Pavich", "found_city": "Orange City", "found_state": "IA", "found_country": "United States", "found_GPS_lat": "43.0022 N", "found_GPS_long": "96.0454 W", "found_year": 2020, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": false, "discovery_notes": "Soil came from a vegetable garden in a backyard", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small, cloudy plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KEBS_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kebs_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-17T10:36:07-05:00", "date_modified": "2022-03-16T11:02:10-04:00" }, { "phage_name": "Keda2", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The letters are the first letters of my mother, father, and sister's names. The number two represents the fact that my father and sister both have names that begin with \"Da\".", "finder_name": "Deanna Fyffe", "found_city": "Oxford", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.508953 N", "found_GPS_long": "84.731953 W", "found_year": 2013, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "Sample was taken from soil beneath a rotted tree in a forest surrounded by other dirt and plants.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Lytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keda2_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keda2_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-10-28T16:04:54-04:00", "date_modified": "2020-09-17T14:06:45-04:00" }, { "phage_name": "KeDo11", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Mitchell Lienemann", "found_city": "Santa Cruz", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-10T14:42:39-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kee91", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kassidy Kee", "found_city": "Doe Run ", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "CUST", "institution_name": "Culver-Stockton College", "institution_logo": "https://phagesdb.org/media/institutions/CulverStocktonCollege.jpg", "institution_url": "http://www.culver.edu/", "institution_city": "Canton", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "40.130005", "institution_longitude": "-91.52986" }, "enriched_sample": true, "discovery_notes": "Soil is from a horse arena with a wooden fence enclosing it. The arena is near an asphalt road.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-30T07:25:21-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "KeeBee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "John Hunter named it after his girlfriend's nickname", "finder_name": "Michael Lee, John Hunter Crum", "found_city": "Caddo Valley", "found_state": "AR", "found_country": "USA", "found_GPS_lat": "34.177906 N", "found_GPS_long": "93.078718 W", "found_year": 2021, "p_institution": { "institution_code": "OUBU", "institution_name": "Ouachita Baptist University", "institution_logo": "https://phagesdb.org/media/institutions/ouachita-baptist-university.jpg", "institution_url": "http://www.obu.edu/", "institution_city": "Arkadelphia", "institution_state": "AR", "institution_country": "USA", "institution_latitude": "34.125830", "institution_longitude": "-93.05277" }, "enriched_sample": true, "discovery_notes": "We found it in our teacher's compost.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are cloudy, have a hazy edge, and are 2mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KeeBee_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-07T10:36:13-05:00", "date_modified": "2022-03-16T11:01:56-04:00" }, { "phage_name": "Keebler", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Stephanie Wood", "found_city": "Orono", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-01-20T09:13:20-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Keeda", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Keeda\" means little bug in the language Marathi", "finder_name": "Ria Joglekar", "found_city": "Jacksonville", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "30.235241 N", "found_GPS_long": "81.501075 E", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "I chose to collect soil in my front yard in Jacksonville, Florida because the weather was temperate and no snowfall had occurred. Collection location was 11736 Glacier Bay Drive, Jacksonville FL on 1/3/2017 at 5:00am. The nearby vegetation was bushes and azalea plants and the soil was sandy and mildly damp because it was drizzling rain. The temperature was approximately 16.11 degrees Celsius.The sample were stored in Ziploc bags in my suitcase for 4 days and then refrigerated for 2 days.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Keeda plaque morphology is very small, round, very cloudy, and therefore Keeda is most likely a temperate, lysogenic phage but must be characterized to confirm. Plaques greatly range in size but are usually in the .25-1mm range.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keeda_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keeda_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-02-01T14:22:19-05:00", "date_modified": "2020-09-17T14:08:31-04:00" }, { "phage_name": "Keef", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was originally JohnDoe, but has been renamed Keef because it is a cute name", "finder_name": "Katherine Ard", "found_city": "Conway", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "33.797642 N", "found_GPS_long": "72.013011 W", "found_year": 2017, "p_institution": { "institution_code": "COCA", "institution_name": "Coastal Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/CoastalCarolinaUniversity.png", "institution_url": "http://www.coastal.edu/", "institution_city": "Conway", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "33.795617", "institution_longitude": "-79.01207" }, "enriched_sample": true, "discovery_notes": "It was outside the campus at 8:32 pm. It was warm outside, but not very humid", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-13T19:58:33-05:00", "date_modified": "2020-09-17T14:08:53-04:00" }, { "phage_name": "Keefe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named me phage after my favorite character from the book series Keeper of the Lost Cities.", "finder_name": "Veronica Pelis", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.219685 N", "found_GPS_long": "97.159243 W", "found_year": 2021, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": null, "discovery_notes": "Dug about 2 cm deep by a tree and some pipes, and the soil was light colored, dry, and crumbly", "isolation_temperature": 97, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, 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"institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-23T20:11:28-04:00", "date_modified": "2020-09-17T14:10:06-04:00" }, { "phage_name": "Keelan", "old_names": "Lienn", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Denniel A. 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"shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1030, "finishing_reactions": 0, "genome_length": 67573, "gcpercent": "51.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "ACTCTGCCCTT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 145, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Keelan_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Keelan_Minimal_Final_ows2cY4.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Keelan_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Keelan_CoverSheet.pdf", 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"http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-12-15T13:43:55-05:00", "date_modified": "2021-05-25T13:14:25-04:00" }, { "phage_name": "Keenasty", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My dog's name.", "finder_name": "Alex Reuter", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.82427 N", "found_GPS_long": "71.404044 W", "found_year": 2018, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "South-West Side of Keeney car park under tree.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", 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{ "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-11T06:41:47-05:00", "date_modified": "2018-12-11T19:14:11-05:00" }, { "phage_name": "Keeper", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and 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The soil was very dry, loose, fine grains with large clumps. There was no moisture.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque I picked was 0.1cm and 1.3cm away from another plaque. 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"genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KeepScrolling_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KeepScrolling_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-12T16:34:28-05:00", "date_modified": "2020-09-17T14:07:09-04:00" }, { "phage_name": "Kees27", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", 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"date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-04T14:23:20-05:00", "date_modified": "2024-01-05T07:54:05-05:00" }, { "phage_name": "Keeshal", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ashley Linke", "found_city": "Cozad", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-05T12:24:08-05:00", "date_modified": "2020-09-17T14:11:43-04:00" }, { "phage_name": "Keet", "old_names": "KKJO3", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "KKJ is the initials of my friends and I. We are similar to phages because we infect everyone with laughter.", "finder_name": "Isabella Valente, Kassidy Sullivan", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.7793 N", "found_GPS_long": "79.9251 W", "found_year": 2018, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": true, "discovery_notes": "Waterfront park\r\nThis phage was first discovered by Isabelle E. Valente (Spring 2018) and then purified, tested, and named by Kassidy Sullivan (Fall 2018).", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Keet_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/SullivanK-59_2-A8-5TN.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Keet_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-12-08T09:01:17-05:00", "date_modified": "2020-06-01T18:50:40-04:00" }, { "phage_name": "Keetada", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Shreyana and Batoul are co-parents, so they merged both of their last names together.", "finder_name": "Shreyana Keeta and Batoul Mortada", "found_city": "TROY", "found_state": "MI", "found_country": "United States", "found_GPS_lat": "42.56529 N", "found_GPS_long": "83.14117 W", "found_year": 2024, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": true, "discovery_notes": "We found Keetada in a pot of soil sitting in Shreyana's backyard in Troy, Michigan. The phage was founded by Shreyana, and then Batoul became a coparent during the process.", "isolation_temperature": 19, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-03T08:32:03-05:00", "date_modified": "2025-07-11T12:34:14-04:00" }, { "phage_name": "Keidon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after myself.", "finder_name": "Keidon Reynolds", "found_city": "Caldwell", "found_state": "ID", "found_country": "USA", "found_GPS_lat": "43.654861 N", "found_GPS_long": "116.677639 W", "found_year": 2019, "p_institution": { "institution_code": "CIDA", "institution_name": "College of Idaho", "institution_logo": "https://phagesdb.org/media/institutions/the-college-of-idaho.gif", "institution_url": "http://www.collegeofidaho.edu/", "institution_city": "Caldwell", "institution_state": "ID", "institution_country": "USA", "institution_latitude": "43.653834", "institution_longitude": "-116.6768" }, "enriched_sample": null, "discovery_notes": "tail length is 233 nm\r\nhead length is 50 nm", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Keidon_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Keidon_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-15T07:31:11-05:00", "date_modified": "2020-09-17T14:11:06-04:00" }, { "phage_name": "Keiki", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kathleen Del Rosario", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.065 N", "found_GPS_long": "118.4425 W", "found_year": 2013, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Isolated from forehead microcomedones.\r\n\r\nPhage isolation and genome annotation performed by Jackie Aganon, Sandhya Ashokkumar, Joshua Chiou, and Kathleen Del Rosario (UCLA). DNA preparation performed by Krisanavane Reddi (UCLA). Assembly performed by William Villella (UCLA) and confirmed by Charles Bowman (University of Pittsburgh). Quality control of annotation results performed by Jordan Moberg Parker and Dallas Mould (UCLA). ", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "BU", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "clear, circular plaques;\r\napproximately 8.0mm, ranging from 5.0-12.0mm", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-05-26", "seq_facility": { "short_name": "UCLA", "facility_name": "The UCLA Genotyping and Sequencing Core", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genoseq.ucla.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 136, "finishing_reactions": null, "genome_length": 29339, "gcpercent": "54.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "TCGTACGGCTT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 45, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Propionibacterium", "species": "acnes", "strain_name": "ATCC 6919", "strain_species": { "id": 18, "genus": "Propionibacterium", "species_name": "acnes", "species_genus": { "id": 8, "genus_domain": "Bacteria", "genus_name": "Propionibacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "6919", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 18, "genus": "Propionibacterium", "species_name": "acnes", "species_genus": { "id": 8, "genus_domain": "Bacteria", "genus_name": "Propionibacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 8, "genus_domain": "Bacteria", "genus_name": "Propionibacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KR337649", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keiki_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Keiki_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Keiki_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Keiki.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keiki_Plaques_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Keiki_EMPic_thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Keiki_081217.dnam5", "date_added": "2015-05-26T16:06:31-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Keiko", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage came from Japanese decent meaning, \"blessed\" or \"lucky\" child. It was decided in a group effort. ", "finder_name": "Lauren Nixdorf , Olivia Faulker", "found_city": "North Andover", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.581667 N", "found_GPS_long": "71.121944 W", "found_year": 2018, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": false, "discovery_notes": "Discovered through a collection soil, and followed with an enriched isolation processes. ", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage plate contained a slightly foggy agar, and had a large population of plaque present. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-06T12:03:14-05:00", "date_modified": "2018-12-06T12:03:14-05:00" }, { "phage_name": "KeilerMann", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Eric Bormann", "found_city": "Worcester", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.27979 N", "found_GPS_long": "71.86008 W", "found_year": 2020, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-10-16T09:45:07-04:00", "date_modified": "2021-10-15T14:03:25-04:00" }, { "phage_name": "Keitabear", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Laura's mother. It is her nickname.", "finder_name": "Laura JoAn Powell, Umar Sahi and Hari Kotturi", "found_city": "McLean", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "35.228611 N", "found_GPS_long": "100.539722 W", "found_year": 2018, "p_institution": { "institution_code": "UCOK", "institution_name": "University of Central Oklahoma", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofCentralOklahoma.JPG", "institution_url": "https://www.uco.edu/", "institution_city": "Edmond", "institution_state": "OK", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The soil was collected next to a road under a tree in McLean Texas. The soil was moist and was rich in vegetation. Top one inch of the soil was collected.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "DE", "temperate": false }, "psubcluster": { "subcluster": "DE1" }, "morphotype": "SIPHO", "plaque_notes": "The virus forms clear plaques with approximate diameter of 1mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-03-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 667, "finishing_reactions": 0, "genome_length": 59759, "gcpercent": "67.3", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 83, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Keitabear_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Keitabear_Minimal_Final_ftmTsmr.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Keitabear_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Keitabear_CoverSheet.pdf", "submitted_annotation_date": "2019-08-12T14:24:34-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Keitabear_flat.txt", "qced_genbank_file_date": "2019-08-12T14:24:34-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "NRRL B-16283", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "This strain seems to be distinct from the ATCC 25594 strain, though they are cross-listed." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN329677", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keitabear_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Keitabear_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Keitabear_Digest.pdf", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Keitabear.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keitabear_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Keitabear_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-30T11:46:09-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Keith", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "in honor of Keith Vanderveen, Ph.D.", "finder_name": "Lorianna Vanderveen", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444 N", "found_GPS_long": "79.947 W", "found_year": 2013, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": true, "discovery_notes": "Found near the Carnegie Mellon University electric garage, from soil 2 - 3 inches deep. The area contained cigarette butts and paint drippings.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "average 1.9mm in diameter, turbid in appearance", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keith_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Keith_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keith_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Keith_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-01-27T12:59:44-05:00", "date_modified": "2024-02-25T15:27:48-05:00" }, { "phage_name": "Keitherie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name is a merge of my husband Keith and my name, Valerie. \r\nKeith + Valerie = Keitherie", "finder_name": "Valerie Zeiher", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.96725 N", "found_GPS_long": "83.995361 W", "found_year": 2015, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "Date discovered: 8/24/2015\r\nSample type: soil/dirt\r\nDepth collected: about 1.5 in deep\r\nTemperature outside that day: 88°F/ 31.1°C\r\n\r\nSoil from the bottom of a hill where water drains down from residences and streets. Located in an open area that sees sunlight much of the day.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Lytic plaques about 2-3 mm in diameter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-06-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1003, "finishing_reactions": 0, "genome_length": 69085, "gcpercent": "66.4", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 105, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Keitherie_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-10-20T09:31:29-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Keitherie.gbf", "qced_genbank_file_date": "2018-10-20T09:31:29-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK112544", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keitherie_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Keitherie.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keitherie_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Keitherie.dnam5", "date_added": "2015-11-16T16:55:34-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Keithstone", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Childhood hero", "finder_name": "Alex Main", "found_city": "Lincoln", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.78188 N", "found_GPS_long": "96.633126 W", "found_year": 2017, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": false, "discovery_notes": "I dug the sample approximately 2 inches deep off of the north side of the lake approximately 40 feet from the shore", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Keithstone_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Keithstone_EMPic.jpg", "dnam_file": null, "date_added": "2017-04-05T23:01:40-04:00", "date_modified": "2020-09-17T14:09:14-04:00" }, { "phage_name": "Keivor", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Windsor Dalrymple", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443876 N", "found_GPS_long": "79.955944 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "At the time of collection it was sunny and the temperature was 13.8 degrees Celsius. The soil was from a flower pot outside. The soil was dry at the time of collection, but there were multiple forms of plant life growing at the time of collection.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Keivor appears to have two different sized plaques. The larger plaques are approximately 1.5mm in diameter, and the smaller plaques are roughly half that size. Both size plaques appear to be circular in nature with clear center, and a surrounding cloudy halo.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keivor_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/Keivor_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Keivor_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keivor_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Keivor_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-10-16T08:03:00-04:00", "date_modified": "2020-09-17T14:08:36-04:00" }, { "phage_name": "KekeDoULoveMe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Benjamin Caskey", "found_city": "Bowling Green", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "BGSU", "institution_name": "Bowling Green State University", "institution_logo": "https://phagesdb.org/media/institutions/BowlingGreenStateUniversity.jpg", "institution_url": "https://www.bgsu.edu/", "institution_city": "Bowling Green", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "41.379062", "institution_longitude": "-83.63134" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-09T12:21:07-04:00", "date_modified": "2020-09-17T14:10:01-04:00" }, { "phage_name": "Keki", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I decided to name it Keki, because it was a name that I felt was unique. Also, since I am latina I would like to incorporate some spanish into my research. ", "finder_name": "Patricia Y. Morales", "found_city": "Denver", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.230694 N", "found_GPS_long": "76.077944 W", "found_year": 2016, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": null, "discovery_notes": "-The phage becomes highly ineffective when removed from host\r\n-The soil sample was highly clumpy, moist, and wet\r\n-The sample was worked on during the summer 2015 and began used in later November \r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "-Circular \r\n-Mostly clear plaque\r\n-1mm-2mm\r\n-in the beginning of the plating process there was suspicion of a shadow phage over the other phage \r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keki_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Keki_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Keki_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keki_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Keki_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-05-16T08:25:47-04:00", "date_modified": "2020-09-17T14:07:17-04:00" }, { "phage_name": "KekW", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "KekW is the name of a glorious, iconic emote on a streaming platform. It is used to express laughter or joy.", "finder_name": "Christian Madden", "found_city": "Blacksburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.2152 N", "found_GPS_long": "80.4488 W", "found_year": 2019, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Extracted from a flower bed outside of an apartment building.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were small and clear with no halo around the edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KekW_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/KekW_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/KekW_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KekW_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KekW_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-11T18:28:35-05:00", "date_modified": "2020-09-17T14:11:14-04:00" }, { "phage_name": "Kela", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name came from combining two city names. The cities we picked were base o where one of our family members were born in. The city was Tela, Honduras and Kerala, India.", "finder_name": "Reena John & Evelyn Reyes", "found_city": "Greenbelt", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.0054 N", "found_GPS_long": "76.8898 W", "found_year": 2018, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 28, "growth_notes": "", "pcluster": { "cluster": "BM", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques are circular and clear, with a diameter ranges from 0.5-1 mm", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-24", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 856, "finishing_reactions": 0, "genome_length": 185323, "gcpercent": "66.6", "end_type": "TREP", "repeat_length": 1043, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 327, "num_tRNAs": 11, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kela_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-01-23T12:14:43-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kela_flat.txt", "qced_genbank_file_date": "2019-12-19T11:20:34-05:00", "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT310898", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kela_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kela_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kela_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kela.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kela-plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kela_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-04T12:08:34-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kela12", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from putting all my name initials together, Kenia Elizabeth Lobo Aranda and my favorite number 12. ", "finder_name": "Kenia Lobo ", "found_city": "Lewisburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.955875 N", "found_GPS_long": "76.88607 W", "found_year": 2012, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": null, "discovery_notes": "The phage was found in the Academic Quad of Bucknell University near the roots of a tree. I dug about 3 inches down and the soil was somewhat moist/dry. The weather was high 90s and sunny. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were cloudy and medium sized. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kela12_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kela12_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kela12_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kela12_Plaque_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kela12_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-11-15T15:59:15-05:00", "date_modified": "2017-09-12T10:27:22-04:00" }, { "phage_name": "Kelanie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name from our phage is a combination of our first names; Kelsey and Stephanie.", "finder_name": "Kelsey Kistner and Stephanie Small", "found_city": "Northampton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.319444 N", "found_GPS_long": "72.637222 W", "found_year": 2014, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": null, "discovery_notes": "Our sample was taken from the ground at a depth of 3 cm next to a cross walk with high foot traffic next to Elm Street. It was a sunny day, with a temperature of 72 degrees Fahrenheit. The soil condition was dry. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Kelanie is a temperate and Siphoviridae phage. The plaques produced had cloudy edges, and were average size. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kelanie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kelanie_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kelanie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kelanie_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-10T14:30:58-05:00", "date_modified": "2020-09-17T14:06:02-04:00" }, { "phage_name": "Kelash", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Combination of both our names.", "finder_name": "Ashley Figucia and Kelly Dovi", "found_city": "North Andover", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.669444 N", "found_GPS_long": "71.123333 W", "found_year": 2017, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": true, "discovery_notes": "We collected the sample on the Merrimack College Campus near Mendel Pond under mulch.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KELASH_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KELASH_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KELASH_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KELASH_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KELASH_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-12-07T23:57:20-05:00", "date_modified": "2020-09-17T14:09:35-04:00" }, { "phage_name": "Kelcifer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kelly Goehring", "found_city": "Santa Cruz", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "36.998898 N", "found_GPS_long": "122.053013 W", "found_year": 2018, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": null, "discovery_notes": "Collected from cow manure pile, moist from recent rain. Sample very fibrous with digested plant material. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-07-04T08:42:27-04:00", "date_modified": "2018-07-04T08:42:27-04:00" }, { "phage_name": "Kelcole", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "After adopting a phage me and my partner combined our names, Kelsey and Nicole, and thought of kelcole.", "finder_name": "Kelsey Thomas and Nicole Garcia", "found_city": "Rock Hill", "found_state": "SC", "found_country": "1", "found_GPS_lat": "34.940685 N", "found_GPS_long": "81.033689 W", "found_year": 2019, "p_institution": { "institution_code": "WNTH", "institution_name": "Winthrop University", "institution_logo": "https://phagesdb.org/media/institutions/WinthropUniversity.jpg", "institution_url": "http://www.winthrop.edu/", "institution_city": "Rock Hill", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "34.939523", "institution_longitude": "-81.03154" }, "enriched_sample": false, "discovery_notes": "adopted from Laela Walker", "isolation_temperature": 21, "growth_notes": "", "pcluster": { "cluster": "EG", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-11-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 733, "finishing_reactions": 0, "genome_length": 62812, "gcpercent": "67.2", "end_type": "TREP", "repeat_length": 203, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 105, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kelcole_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-05-04T10:00:46-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KelCole_flat.txt", "qced_genbank_file_date": "2020-05-04T09:05:30-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT553342", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kelcole_Plaque_3MxOasZ.png", "em_file": "https://phagesdb.org/media/emPics/Kelcole_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Kelcole_Digest.jpeg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kelcole.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/IMG_1240_2.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/IMG_1385.jpeg", "dnam_file": null, "date_added": "2019-10-03T15:17:39-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Keldeo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after one of my favourite Pokémon characters. It is a mythical water-type creature.", "finder_name": "Xeius Tran-Wong", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.277807 N", "found_GPS_long": "75.702544 W", "found_year": 2022, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This bacteriophage was isolated from a soil sample collected from the side of Rideau River. It was very wet, dark brown, and contained high amounts of plant material.", "isolation_temperature": 18, "growth_notes": "", "pcluster": { "cluster": "AZ", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Large plaques, clear, bull's eye.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keldeo_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Keldeo_EMPic_Df7CBRm.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Keldeo_Digest_bxa3ZMS.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-07T09:07:56-04:00", "date_modified": "2024-02-25T15:27:56-05:00" }, { "phage_name": "Keller", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Esperanza Hinojos", "found_city": "Keller", "found_state": "TX", "found_country": "United States of America", "found_GPS_lat": "32.965578 N", "found_GPS_long": "97.270407 W", "found_year": 2020, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were clear, round edged, approximately 2-3mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keller_Plaque_8boS7eR.tiff", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Keller_Digest_6MfRGdo.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keller_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-10-28T11:35:47-04:00", "date_modified": "2021-01-28T11:04:07-05:00" }, { "phage_name": "KellEzio", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "'Ezio' is the name of my favorite character from a video game.", "finder_name": "Kelly Lynch", "found_city": "Burkesville", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "36.638978 N", "found_GPS_long": "85.298609 W", "found_year": 2013, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken from the base of a large tree at the lodge next to Dale Hollow Lake. The large tree was along a main sidewalk, and the sample was taken from the surface of the soil. The soil was light in color and appeared to be dry. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AT", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were lytic and very small. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-15", "seq_facility": null, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4231, "finishing_reactions": 0, "genome_length": 58871, "gcpercent": "63.3", "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "This phage has a bizarre coverage pattern. Over 95% of the reads align to one strand (the reverse strand as the final sequence is reported) and only a smattering of reads align to the other. This is highly unusual, and as of Jan 2016 has only been seen in the other Cluster AT phage, Kitkat.\r\n\r\nCare was taken to ensure that this was not a bioinformatic artifact.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 98, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU647626", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Ezio_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Ezio_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Ezio_Digest.jpg", "vdigest_file": "https://phagesdb.org/media/vDigestPics/Ezio_VirtualDigest.jpg", "fasta_file": "https://phagesdb.org/media/fastas/KellEzio.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KellEzio_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KellEzio_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/KellEzio.dnam5", "date_added": "2014-01-16T20:44:40-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "KelliBelli", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Kelly, my schnauzer. Pronounced Key-Lie Bee-Lie, similarly to the iconic gummy rat video.", "finder_name": "Rheaven Sandoval", "found_city": "Stephenville", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "TARL", "institution_name": "Tarleton State University", "institution_logo": "https://phagesdb.org/media/institutions/TarletonStateUniversity.png", "institution_url": "http://www.tarleton.edu", "institution_city": "Stephensville", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "32.216025", "institution_longitude": "-98.21594" }, "enriched_sample": false, "discovery_notes": "Discovered in a moist ant hill in Jaycee Park. ", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Large, clear, lytic plaques. Define, pronounced borders.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/SEA-PHAGES-Tarleton-State-University-Dustin-Edwards-KelliBelli-plaque.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KelliBelli_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-11-16T10:44:17-05:00", "date_modified": "2020-09-17T14:10:16-04:00" }, { "phage_name": "Kellix", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Angelica Willis", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.7844 N", "found_GPS_long": "86.0915 W", "found_year": 2008, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "From soil <5cm from surface, near a ditch, under woodchips. In Smallenburg Park. 89°F", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "4mm plaque\r\nCloudy with 2mm clear circle in center\r\nIncubated 24 hours at 37°C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kellix_plaque.png", "em_file": "https://phagesdb.org/media/emPics/kellix_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/Kellix_digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kellix_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/kellix_EM_thubm.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2020-07-17T21:05:38-04:00" }, { "phage_name": "Kelly", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Stella Magnuson & Whitney Temby-Sturtevant", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.6673 N", "found_GPS_long": "117.4013 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Cultured at 22°C", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kelly_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kelly_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-12T17:31:55-05:00", "date_modified": "2020-09-17T14:09:02-04:00" }, { "phage_name": "Kelly71", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Tanya E Kelly", "found_city": "South Portland", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "43.646303 N", "found_GPS_long": "70.227056 W", "found_year": 2012, "p_institution": { "institution_code": "SMCC", "institution_name": "Southern Maine Community College", "institution_logo": "https://phagesdb.org/media/institutions/smcc.jpg", "institution_url": "http://www.smccme.edu/", "institution_city": "South Portland", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "43.649671", "institution_longitude": "-70.22885" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kelly71_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/em_86mK7pY.jpeg", "dnam_file": null, "date_added": "2012-12-06T21:47:17-05:00", "date_modified": "2020-07-01T15:51:57-04:00" }, { "phage_name": "Kellyn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I liked the name", "finder_name": "Seth Barclay", "found_city": "Manhattan", "found_state": "KS", "found_country": "United States of America", "found_GPS_lat": "39.193889 N", "found_GPS_long": "96.600556 W", "found_year": 2024, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": true, "discovery_notes": "Sample collected at an elevation of 347.472 meters at 7:52 pm EST on 9/2/24. Sample collected approximately 8cm below surface.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Pinpointed, rounded", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kellyn_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/Kellyn_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-19T13:18:38-05:00", "date_modified": "2025-04-04T11:37:35-04:00" }, { "phage_name": "KellyNW3", "old_names": "NW225", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Last name of the discoverer's family and the number of soil sample. ", "finder_name": "Jiachen Ning", "found_city": "PA", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443629 N", "found_GPS_long": "79.944648 W", "found_year": 2016, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": false, "discovery_notes": "The soil is found near Carnegie Mellon University Gates Complex. There are many bushes around the soil sample. The soil is a little wet when collected. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plague is fairly clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-20T14:18:01-04:00", "date_modified": "2020-09-17T14:07:05-04:00" }, { "phage_name": "KelP", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kelis Pollock", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.907192 N", "found_GPS_long": "77.036871 W", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "We used the soil in between the trees and plants near the left of Blackburn entrance; low foot soil\r\n[2440 6th St NW Washington, DC 20059]\r\n\r\nDepth: 13cm-15cm \r\nTemperature: 68 degrees Fahrenheit \r\n\r\nDate Collected: 9/7/17", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-09-18T07:22:35-04:00", "date_modified": "2020-09-17T14:08:21-04:00" }, { "phage_name": "Kelpie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A kelpie, or water kelpie, is a shape-shifting spirit inhabiting lochs in Irish and Scottish folklore.", "finder_name": "Morgan Kenney", "found_city": "Frostburg", "found_state": "MD", "found_country": "United States of America", "found_GPS_lat": "39.5802 N", "found_GPS_long": "78.94516 W", "found_year": 2024, "p_institution": { "institution_code": "ALGY", "institution_name": "Allegany College of Maryland", "institution_logo": "https://phagesdb.org/media/institutions/allegany2.jpg", "institution_url": "", "institution_city": "Cumberland", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil sample was collected alongside a riverbank. 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"p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "G", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, 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"http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kelryn_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kelryn_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kelryn_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kelryn_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-12-01T04:39:30-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kels", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating 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"qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-23T07:21:03-04:00", "date_modified": "2020-09-17T14:11:04-04:00" }, { "phage_name": "KelseyBryzek", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kelsey Bryzek", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": null, "discovery_notes": "soil from flower bed", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "large, turbid plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-09T09:44:27-05:00", "date_modified": "2015-12-09T09:44:27-05:00" }, { "phage_name": "Kelseysface", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kelsey Fitzgerald", "found_city": "Superior", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "39.932552 N", "found_GPS_long": "105.153706 W", "found_year": 2011, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "8/29/2011, 2cm, 27.2C\r\nnear lawn, surrounding flowers", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "ranges from 2-6mm, some haloed, clear centers", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kelseysface_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kelseysface_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kelseysface_Plaque_Thumb_cIpWJQe.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-12-06T07:08:00-05:00", "date_modified": "2020-07-30T15:17:18-04:00" }, { "phage_name": "Kelsier", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "from the Mistborn series by Brandon Sanderson", "finder_name": "Lillian Leak", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.492897 N", "found_GPS_long": "80.056556 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Location: Found in shady area between suburban houses, under blueberry bushes, lilac bushes, rose of sharon, and a mulberry tree. Enriched soil. \r\n\r\nSoil quality: Dark, loose, some stray leaves, not particularly dry or wet.\r\n\r\nWeather: Cloudyish, temperature 57 degrees Fahrenheit, brisk.\r\n\r\nSame exact location as Phage OneInALillian.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Halo morphology. Between .5 and 5 mm in diameter. Circular. ", "lysogeny_notes": "A mesa was produced after 7 days of incubation at 30 degrees Celsius, but no bacterial colonies were formed in streaking. This will be redone next semester for more conclusive data.", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kelsier_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kelsier_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kelsier_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kelsier_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kelsier_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-09-29T16:36:03-04:00", "date_modified": "2020-09-17T14:08:37-04:00" }, { "phage_name": "Kelso", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alyssa Kriukov, Marisa Ursu", "found_city": "Kenosha", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "42.616 N", "found_GPS_long": "87.8337 W", "found_year": 2018, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": true, "discovery_notes": "Found in potted plant on Carthage campus. It was 60 degrees F when soil sample was collected.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kelso_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kelso_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-25T13:19:00-04:00", "date_modified": "2020-09-17T14:09:47-04:00" }, { "phage_name": "Kelthony", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "When naming this all we did was combine the names of myself and my partner...pretty clever.", "finder_name": "Kelly Finn, Anthony Pinza", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.0 N", "found_GPS_long": "117.0 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We took our initial sample from soil near the Spokane River. The soil was pretty damp and had several rocks. It is on the campus of Gonzaga University.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques were roughly 4mm in diameter and we constantly clear indicating that they are lytic phages. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kelthony_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kelthony_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kelthony_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kelthony_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-04-15T12:41:43-04:00", "date_modified": "2020-09-17T14:06:57-04:00" }, { "phage_name": "Keluma", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of our phage combines the last names of the two people who found it! Kelley + Auma = Keluma!", "finder_name": "Khloe Kelley and Nora Auma", "found_city": "Washington", "found_state": "DC", "found_country": "", "found_GPS_lat": "37.09024 N", "found_GPS_long": "95.71289 W", "found_year": 2021, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-03T09:18:14-04:00", "date_modified": "2022-03-16T11:01:42-04:00" }, { "phage_name": "Kelzog", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Anthony Herzog and Dan Kelley", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "40.00427 N", "found_GPS_long": "83.02752 W", "found_year": 2023, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "sample taken under mulch", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CS", "temperate": false }, "psubcluster": { "subcluster": "CS2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-08-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1690, "finishing_reactions": 0, "genome_length": 76383, "gcpercent": "58.9", "end_type": "TREP", "repeat_length": 191, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 108, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kelzog.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-06-16T13:47:03-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kemac", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My name is Ke and my partners is Macy", "finder_name": "Keara Henry", "found_city": "Greenville", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "41.4127 N", "found_GPS_long": "80.38339 W", "found_year": 2022, "p_institution": { "institution_code": "THIE", "institution_name": "Thiel College", "institution_logo": "https://phagesdb.org/media/institutions/thiel.png", "institution_url": "https://www.thiel.edu/", "institution_city": "Greenville", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The sample was found at the corner of two sidewalks. It is close to the academic building at Thiel College. There was about 5 inches of snow on top of the soil that was collected. There also is a strong possibility that there is tons of foot traffic in this area due to the sidewalks proximity. The ground was not sloped. the soil was found moist.", "isolation_temperature": -3, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "phage has a halo and is somewhat big. it has transparent plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-02-24T13:00:50-05:00", "date_modified": "2022-10-20T11:27:15-04:00" }, { "phage_name": "Kemet", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Bakare Awakoaiye", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.9225 N", "found_GPS_long": "77.021389 W", "found_year": 2014, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "The soil this phage was sampled from was very fresh and soft. The temperature around the time was 23 degrees Celsius and the depth of the sample was approximately 3 cm.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kemet_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-26T00:19:10-05:00", "date_modified": "2015-04-29T14:32:35-04:00" }, { "phage_name": "Kemma", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We combined our names (Kelsey + Emma = Kemma). ", "finder_name": "Kelsey Bullens and Emma Fort", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "It was isolated on Mycobacterium Smegmatis, but I do not know what number. We found this soil in a flower bed right outside of the lab that we worked in to isolate this phage. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kemma_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kemma_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-12-19T17:30:25-05:00", "date_modified": "2020-09-17T14:05:53-04:00" }, { "phage_name": "Kempella", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Stephanie Haney", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kempella_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kempella_EMPic_Thumb.png", "dnam_file": null, "date_added": "2011-11-29T04:07:05-05:00", "date_modified": "2020-06-01T18:52:29-04:00" }, { "phage_name": "KempNelson", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is to represent my mother's maiden's last name and my father's last name.", "finder_name": "Rylan Nelson", "found_city": "Kewanee", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "41.23418 N", "found_GPS_long": "89.97572 W", "found_year": 2023, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": true, "discovery_notes": "Was gathered from the base of a former burn pile that once had decomposing matter sitting on top with a manmade pond on one side, farmland on another, and woodland on the other side.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques formed had defined edges and were very transparent, additionally, the plaques were relatively on the smaller side.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KempNelson_Plaque.heic", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-10T10:03:14-04:00", "date_modified": "2024-02-25T15:28:12-05:00" }, { "phage_name": "Kemsah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Salman Ahmad", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.969438 N", "found_GPS_long": "118.416593 W", "found_year": 2010, "p_institution": { "institution_code": "LOMA", "institution_name": "Loyola Marymount University", "institution_logo": "https://phagesdb.org/media/institutions/Loyola_Marymount.jpg", "institution_url": "http://www.lmu.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.970679", "institution_longitude": "-118.4174" }, "enriched_sample": true, "discovery_notes": "Dark, non-sandy soil, slightly damp, 21/2 inches deep, 70°F temperature in Loyola Marymount University Planter", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "clear plaques, large ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kemsah_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kemsah_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kemsah_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kemsah_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-01-25T05:33:45-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kenai", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Colleen Donahue, Caroline Keever", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.659667 N", "found_GPS_long": "117.401833 E", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-01T16:17:26-04:00", "date_modified": "2020-09-17T14:07:37-04:00" }, { "phage_name": "Kenbey", "old_names": "Thankyounext", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our phage name came from a popular song but we chose it because our phage was difficult to work with at the beginning which made it hard to move on to the next steps.", "finder_name": "Kendyl Andersona and Abbey Arguilez", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666948 N", "found_GPS_long": "117.402953 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Sample was collected from a patch of dirt outside of the Hughes building at Gonzaga University.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our phage was: \r\n- Clear \r\n- Circular \r\n- Size ranged from 0.5-1.5", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenbey_Plaque_HHQc2Cr.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenbey_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-12T21:28:41-04:00", "date_modified": "2020-09-17T14:11:51-04:00" }, { "phage_name": "Kenchie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Nickname for my daughter Mikenchie", "finder_name": "Hamidu Tei Mohammed", "found_city": "Bethlehem", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.610152 N", "found_GPS_long": "75.376593 W", "found_year": 2022, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "Gritty, slightly moist, black soil with lots of grass roots.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Forms approximately 2.0mm plaques on Gibco/Difco agar plates", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenchie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kenchie_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenchie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kenchie_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-06-29T11:35:56-04:00", "date_modified": "2025-09-02T16:12:51-04:00" }, { "phage_name": "Kendall305", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage is very representative as it was collected in Kendall Miami. 305 is the area code and Kendall305 is very fitting.", "finder_name": "Sarah Diaz and Brianna Espinoza", "found_city": "Miami", "found_state": "FL", "found_country": "United States", "found_GPS_lat": "25.29748 N", "found_GPS_long": "80.40141 W", "found_year": 2024, "p_institution": { "institution_code": "FLIU", "institution_name": "Florida International University", "institution_logo": "https://phagesdb.org/media/institutions/FIULogo.png", "institution_url": "http://www.fiu.edu/", "institution_city": "Miami", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "25.758444", "institution_longitude": "-80.37617" }, "enriched_sample": true, "discovery_notes": "Soil was collected in backyard, next to a tree, grass and other plants. Soil was damp, and weather was rainy.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are small, about 2-2.5 cm, smooth. Plaques are relatively clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T10:34:24-04:00", "date_modified": "2025-07-11T12:34:17-04:00" }, { "phage_name": "Kendalmintcake", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My professor always mentioned it and it's my name.", "finder_name": "Kendall Westlake", "found_city": "Saint Leo", "found_state": "FL", "found_country": "United States", "found_GPS_lat": "28.336608 N", "found_GPS_long": "82.265376 W", "found_year": 2023, "p_institution": { "institution_code": "SLEO", "institution_name": "Saint Leo University", "institution_logo": "https://phagesdb.org/media/institutions/SLEO.png", "institution_url": "http://www.saintleo.edu/", "institution_city": "Saint Leo", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "In front of a plant that is next to a tree. The soil was dark and moist the depth was 1 inch. The soil was not that thick. More of a darker shade.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-13T10:17:41-05:00", "date_modified": "2023-12-13T10:17:41-05:00" }, { "phage_name": "Kendera", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Wendy Kendera", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Obtained from moist, dark, fertile soil on the ground next to the Business Leadership Building at The University of North Texas.\r\nTime 7.30 a.m\r\nTemperature 63 degrees Farads.\r\nG.P.S Coordinates:\r\n 33°12’30.7296”N\r\n 97°08’54.2616”W", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Cloudy plaques\r\nSmall in size( diameter of about 0.4mm)\r\nPlaques had rough edges.", "lysogeny_notes": "Temperate phage", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kendera_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-04-14T17:43:06-04:00", "date_modified": "2020-09-17T14:06:22-04:00" }, { "phage_name": "Kendiddhi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a mix of Kendall and Riddhi, the two phage discoverers.", "finder_name": "Kendall Dollard & Riddhi Bombaywala", "found_city": "Wynantskill", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "42.662558 N", "found_GPS_long": "73.645503 W", "found_year": 2021, "p_institution": { "institution_code": "ACPS", "institution_name": "Albany College of Pharmacy and Health Sciences", "institution_logo": "https://phagesdb.org/media/institutions/apchsnav_logo.png", "institution_url": "https://www.acphs.edu/", "institution_city": "Albany", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil sample was found in a dry, composted vegetable garden.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are circular and smooth. The average size of the plaques are 0.8mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kendiddhi_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/kendiddhi_empic_thumb.jpg", "dnam_file": null, "date_added": "2021-11-09T16:35:58-05:00", "date_modified": "2022-03-16T11:01:59-04:00" }, { "phage_name": "KenDot", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It was found next to Kennedy Hall at UMass Amherst, and the morphology of the phage is a dot.", "finder_name": "Harini I, Meagan B, Tanvi G, Edmund T-B", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.384564 N", "found_GPS_long": "72.529531 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "It was obtained near the base of a tree, it was also pretty wet dirt.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, circular plaques about 1 mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-28T16:14:07-04:00", "date_modified": "2025-04-01T10:23:46-04:00" }, { "phage_name": "KendraB23", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "K because my first name starts with K, B because my nickname starts with B, and 23 is my favorite number", "finder_name": "Kendra Carroll", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.44799 N", "found_GPS_long": "79.92424 E", "found_year": 2024, "p_institution": { "institution_code": "CHAT", "institution_name": "Chatham University", "institution_logo": "https://phagesdb.org/media/institutions/chatham_logo_NB0QvGQ.png", "institution_url": "https://www.chatham.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.449259", "institution_longitude": "-79.925094" }, "enriched_sample": null, "discovery_notes": "Found behind one of the buildings on the Chatham University campus.", "isolation_temperature": 13, "growth_notes": "", "pcluster": { "cluster": "AS", "temperate": true }, "psubcluster": { "subcluster": "AS1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2921, "finishing_reactions": 0, "genome_length": 39770, "gcpercent": "66.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "GAGTCGCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 76, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KendraB23.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-07T09:55:45-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kendrick", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "No particular naming notes other than that it was named after a famous music artist.", "finder_name": "Eric Byeon", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": null, "discovery_notes": "Found on dark and slightly moist soil which was covered under decomposing leaves. Also had lots of fauna growing near it including trees and bushes. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque morphology was a bullseye shape which ranged from 1-3 millimeters in diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-12-10T14:33:48-05:00", "date_modified": "2015-04-29T14:32:35-04:00" }, { "phage_name": "Kendyah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kennedy Shelby and N'Dyah Rathod", "found_city": "Washington", "found_state": "DC", "found_country": "United States", "found_GPS_lat": "38.92213 N", "found_GPS_long": "77.61748 W", "found_year": 2023, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-09T14:14:25-04:00", "date_modified": "2024-02-25T15:28:13-05:00" }, { "phage_name": "Kendyl", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named the phage \"Kendyl\" because my name is Kendyl. I think the spelling with a \"-y\" versus the traditional spelling with \"-all\" is interesting. I also believed that the name would have a high probability of not having been introduced to the phage community. ", "finder_name": "Kendyl Sing", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444 N", "found_GPS_long": "79.9589 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil was dry and showed no signs of fertility due to the lack of grass and the amount of wooden sticks that littered around the spot of soil collection. The soil was easily sifted and was very dry as the collection did not stick to each other at all. The soil was by no means compact and was surrounded by broken sticks and littered items. The ground was hard and had little to no depth when collecting the soil. Because of this the soil was collected at 2 inches under the ground. The temperature was 75 degrees Fahrenheit at the time of soil collection. ", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques appeared clear, non-turbid, and had a clear round border. The plaque appeared to be about 1mm in diameter. ", "lysogeny_notes": "Possibly lytic due to the clear round borders of the plaques; however lysogen testing was not carried out due to time constrictions. This means that official lysogeny of Phage Kendyl could not be determined, but remains possibly lytic. ", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": 0, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kendyl_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kendyl_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kendyl_Digest_pK3tKku.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kendyl_Plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kendyl_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-09-28T12:48:07-04:00", "date_modified": "2020-09-17T14:08:37-04:00" }, { "phage_name": "KenGen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Genevieve Guerra, Kenzie Kerr", "found_city": "Westchester", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "LOMA", "institution_name": "Loyola Marymount University", "institution_logo": "https://phagesdb.org/media/institutions/Loyola_Marymount.jpg", "institution_url": "http://www.lmu.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.970679", "institution_longitude": "-118.4174" }, "enriched_sample": true, "discovery_notes": "2-3 inches deep, dry soil approximately 70 degrees Fahrenheit. Soil was collected in an area with some scattered mulch, in the shade, about 6-12 inches from low shrubbery.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "After 48 hour incubation periods: plaques were 4 mm in diameter, very round with very defined edges, concentric circles; cloudy dot in center of clear circle with cloudy ring; lysogenic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KenGen_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KenGen_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KenGen_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KenGen_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KenGen_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-11-10T06:18:15-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kengon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage name comes from a combination of both researchers name.", "finder_name": "Karen Gi, Keneisha Benton", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.73107 N", "found_GPS_long": "117.16324 W", "found_year": 2022, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Found on the blacktop of the Terrell and Holland Library. Specifically, in the right garden section closest to the dome on top of the blacktop.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque was extremely aggressive with the top agar.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-04-29T12:53:32-04:00", "date_modified": "2022-04-29T12:53:32-04:00" }, { "phage_name": "Kenhanam", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A combination of both lab partners' last names, (Jenna) Kent and (Sahithi) Govardhanam.", "finder_name": "Jenna Kent, Sahithi Govardhanam", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.009 N", "found_GPS_long": "105.2687 W", "found_year": 2022, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Sample site was outside of the Porter Biosciences building at the University of Colorado Boulder, on 8/30/2022 at 10:15AM.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Temperate; turbid edges with a clear middle, varying diameters (avg. around 3mm)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenhanam_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kenhanam_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kenhanam_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-29T15:14:27-05:00", "date_modified": "2024-02-25T15:27:58-05:00" }, { "phage_name": "Kenico", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A combination of the discoverer's names.", "finder_name": "Kenny Salamea and Nico Carbone", "found_city": "Bloomfield", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.787778 N", "found_GPS_long": "74.193333 W", "found_year": 2013, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kenico_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kenico_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kenico_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-11-14T12:42:16-05:00", "date_modified": "2020-09-17T14:05:18-04:00" }, { "phage_name": "Kenji", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Joseph is 1/4 Japanese and his father almost named him this", "finder_name": "Joseph McBride, Megan Powell, Sabnum Pudasainy", "found_city": "West Monroe", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.532513 N", "found_GPS_long": "92.178524 W", "found_year": 2016, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": true, "discovery_notes": "Found on same plate from soil sample of Velthrick.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Fuzzy plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "erythropolis", "strain_name": "RIA 643", "strain_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "15903", "genbank_accession": "", "strain_information": "Originally listed on ATCC as Rhodococcus globerulus." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-15T20:41:55-05:00", "date_modified": "2020-09-17T14:07:07-04:00" }, { "phage_name": "Kenji8", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "'Kenji8' was coined from the social media username of the founder.", "finder_name": "Comfort Adegboye", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.923151 N", "found_GPS_long": "77.02159 W", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": false, "discovery_notes": "Sample collected from a flower bed in front of the Howard University Administrative Building.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-09-18T07:16:57-04:00", "date_modified": "2020-09-17T14:08:21-04:00" }, { "phage_name": "Kenko", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I wanted my phage name to mean something, so Kenko means Health in Japanese and Kenko sounds like a good name.", "finder_name": "Malerbe Gilles", "found_city": "Montclair", "found_state": "NJ", "found_country": "United States", "found_GPS_lat": "40.866297 N", "found_GPS_long": "74.001248 W", "found_year": 2021, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were circular and were small.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenko_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kenko_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Kenko_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-15T12:09:29-05:00", "date_modified": "2022-03-16T11:02:46-04:00" }, { "phage_name": "Kenmae", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Olesya Larson and Samantha Christy", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.009 N", "found_GPS_long": "105.269 W", "found_year": 2022, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Found on CU Boulder campus in a shaded dry area on 8/30 at 1:55 pm.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Cloudy plaques approximately 2mm diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenmae_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kenmae_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kenmae_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-30T08:58:00-05:00", "date_modified": "2024-02-25T15:27:58-05:00" }, { "phage_name": "Kenmech", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after my grandfather.", "finder_name": "Anthony Stewart", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.40782 N", "found_GPS_long": "79.976976 W", "found_year": 2020, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", 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"is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenmech_CompleteNotes_XvxuD4O.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenmech_Minimal_Final_5ZSgZka.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kenmech_Authors_5KwPJlP.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kenmech_CoverSheet_A6jIdVO.docx", "submitted_annotation_date": "2022-07-08T15:23:19-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kenmech_flat_AN5KYhy.txt", "qced_genbank_file_date": "2022-07-08T15:23:19-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP021677", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kenmech.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-05-29T16:09:51-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kenn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Bria Morton-Lane", "found_city": "Washington, D.C.", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.923522 N", "found_GPS_long": "77.018873 W", "found_year": 2018, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-23T20:17:52-04:00", "date_modified": "2020-09-17T14:10:06-04:00" }, { "phage_name": "Kenna", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I decided to name this phage after my little brother, Kenna. His name means \"gift\" in Oromo, a language commonly spoken in Ethiopia.", "finder_name": "Watole Hamda", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.446071 N", "found_GPS_long": "79.955902 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": " The GPS coordinates of the soil sample location: 40.446071 N, 79.955902 W\r\n Weather condition at the time of collection: 20 degree F, overcast, slight winds\r\n Weather condition in the last 24 hours: High of 16 degrees F, Min of 7 degrees F\r\n Sample was immediately stored and was stored for approx. 30 minutes prior to usage\r\n Soil conditions: Hard, Cold, snow on the ground", "isolation_temperature": -22, "growth_notes": "", "pcluster": { "cluster": "DN", "temperate": true }, "psubcluster": { "subcluster": "DN1" }, "morphotype": "SIPHO", "plaque_notes": "Kenna's plaque morphology consists of plaques that are large (~2.5mm diameter), circular, and clear. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-05-22", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2286, "finishing_reactions": 0, "genome_length": 53215, "gcpercent": "63.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CTCGGGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 98, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenna_Minimal_Final_fU9vH99.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-12-06T16:03:39-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kenna_flat.txt", "qced_genbank_file_date": "2018-12-06T16:03:39-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK279906", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenna_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kenna_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kenna_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kenna.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenna_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kenna_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-02-19T07:52:01-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kennan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kennan Okada", "found_city": "Williamsburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.271694 N", "found_GPS_long": "76.723028 W", "found_year": 2019, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kennan_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kennan_EMPic.JPG", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kennan_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kennan_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-12-17T14:27:22-05:00", "date_modified": "2021-01-28T11:04:18-05:00" }, { "phage_name": "KennedieAndrew", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Andrew May", "found_city": "Pryor", "found_state": "OK", "found_country": "US", "found_GPS_lat": "36.3084 N", "found_GPS_long": "95.3169 W", "found_year": 2023, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": null, "discovery_notes": "Soil was dark and moist with light particles dispersed throughout", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-05T11:18:02-05:00", "date_modified": "2024-02-25T15:28:19-05:00" }, { "phage_name": "Kennedy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I decided to name my phage Kennedy. JFK is my favorite President so I named my phage after him and also all the different conspiracy theories behind his death I find extremely interesting.", "finder_name": "Jessica Lindemann", "found_city": "Philapelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.95 N", "found_GPS_long": "75.16 W", "found_year": 2014, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "Soil sample taken was about the size of a fist, and was collected on September 16th 2014 at around 9:45am. It was 17 degrees Celsius and the condition of the soil was moist. The sample was taken behind the dumpster of Sourin residence hall.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Kennedy's plaques were very clear and had nice defined circular boundaries. The size of the plaques were average. Kennedys width and length averaged 2mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kennedy_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kennedy_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kennedy_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kennedy_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kennedy_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-02T11:46:27-05:00", "date_modified": "2024-02-25T15:27:48-05:00" }, { "phage_name": "Kennel", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Gonzaga's student body athletic fan base, \"The Kennel Club\".", "finder_name": "Sarah Walker and Travis Xanders", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.665517 N", "found_GPS_long": "117.398408 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Found near the McCarthy Athletic Center at Gonzaga University. Was found underneath foliage near the top of the waterfall.", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Capside: 75nm\r\nTail: 220 nm\r\nDifficulty growing at 37ºC", "lysogeny_notes": "Did not grow in K lysogen.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kennel_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kennel_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kennel_Digest_1.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kennel_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kennel_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-04-21T14:52:37-04:00", "date_modified": "2020-09-17T14:06:57-04:00" }, { "phage_name": "Kenneth", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jade Connor", "found_city": "Waco", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.546497 N", "found_GPS_long": "97.113916 W", "found_year": 2013, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "Phage was gathered from dry, sandy soil under a large oak tree on the Baylor Campus. Temperature was approximately 88 degrees Fahrenheit. Soil was collected on September 25, 2013.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque was 3.8 mm in diameter, with a small, completely clear section in the middle and is progressively more cloudy as it extends to the edge of the plaque. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenneth_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kenneth_EMPic_2.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kenneth_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenneth_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kenneth_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2013-12-06T15:47:42-05:00", "date_modified": "2020-09-17T14:05:19-04:00" }, { "phage_name": "Kenneth22", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nathan Koorndyk", "found_city": "Springboro", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "39.548611 N", "found_GPS_long": "84.222222 W", "found_year": 2019, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": false, "discovery_notes": "Discovered from soil under a top layer of mulch behind the house, near a bush.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small to medium sized plaques, distinct rings around the main plaque with a comet tail present as well.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-16T13:16:15-04:00", "date_modified": "2022-10-21T07:30:54-04:00" }, { "phage_name": "KennethJam", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a portmanteau of Kenneth's first name and Albert's middle name.", "finder_name": "Samantha Garcia", "found_city": "Brownsville", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "TXSM", "institution_name": "Texas Southmost College", "institution_logo": "https://phagesdb.org/media/institutions/tsc-logo-stacked.png", "institution_url": "http://www.tsc.edu/", "institution_city": "Brownsville", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The phage was adopted by Kenneth Cabrera and Albert James Olvera from Samantha at the beginning of the Fall 2022 semester. Its titer is 1.33x10^10. The date of", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KennethJam_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-14T08:22:05-05:00", "date_modified": "2024-02-25T15:28:02-05:00" }, { "phage_name": "Kennifer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Kennifer\" is a nickname for the student who collected the soil sample.", "finder_name": "Madison Janzen and Mackenzie Janzen", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.7309 N", "found_GPS_long": "117.1651 W", "found_year": 2018, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": true, "discovery_notes": "The soil moisture was dry. The air temperature was 19 degrees Fahrenheit. The soil depth was 2 cm. The soil was located near a large vent on the side of a building that was releasing warm air. The soil sample was collected by Mackenzie Janzen on February 22, 2018.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology of the plaques varies. They have typically appeared as small, clear circles. Sometimes there have been hazy rings around the plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kennifer_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-23T20:20:26-04:00", "date_modified": "2020-09-17T14:09:45-04:00" }, { "phage_name": "Kenny", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Victor Yu", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442478 N", "found_GPS_long": "79.952866 E", "found_year": 2013, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Kenny is roughly 210nm in total length, 50nm diameter for the capsid, and 160nm for the tail. The tail is flexible and non contractile. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenny_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kenny_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kenny_Digest_1.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenny_Plaque_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kenny_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-09-24T09:45:44-04:00", "date_modified": "2017-09-28T16:41:22-04:00" }, { "phage_name": "Kenny2", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is named after myself. ", "finder_name": "Kenil Patel", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.9597 N", "found_GPS_long": "75.1903 E", "found_year": 2017, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "I dug 2 inches into the soil. I picked an area right outside of the Millennium Hall of Drexel University. The soil was on the dryer side in terms of moisture. The soil collected was nice and dark, it also contained several stones and twigs. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "It was clear, with several observable plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-04T19:28:00-05:00", "date_modified": "2020-09-17T14:08:48-04:00" }, { "phage_name": "Kenobi", "old_names": "ObiOne", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is based off the Star Wars character Obi Wan Kenobi, being a play on words to be ObiOne", "finder_name": "Donald Rayner and Chad Cassady", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.667538 N", "found_GPS_long": "117.405076 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The phage is located in front of the Jepson building at Gonzaga University, and the soil sample that was used was collected in front of Jepson underneath one of the trees.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The size of a single plaque was roughly .4 cm in width. \r\nThe plaques have a little bit rough edges, and throughout the whole thing it is mostly clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/ObiOne_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kenobi_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kenobi_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/ObiOne_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kenobi_EMPic_Thumb.png", "dnam_file": null, "date_added": "2019-11-07T13:06:18-05:00", "date_modified": "2020-09-17T14:11:51-04:00" }, { "phage_name": "Kenobi4", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alayna Stong", "found_city": "Plattsburgh", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "44.77765 N", "found_GPS_long": "73.37722 W", "found_year": 2024, "p_institution": { "institution_code": "SNYP", "institution_name": "State University of New York-Plattsburgh", "institution_logo": "https://phagesdb.org/media/institutions/PlattsburghSeal.png", "institution_url": "", "institution_city": "Plattsburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found at Cumberland Bay State Park, in compost soil.", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-05T14:48:13-05:00", "date_modified": "2025-04-04T11:37:23-04:00" }, { "phage_name": "Kenocean", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The dirt I used to discover the phage was found near the shore of Lake Michigan in Kenosha, Wisconsin. The lake is so big and has waves that make it look like an ocean sometimes so that some people call Lake Michigan the Kenocean. The name is fitting because it was found near that area.", "finder_name": "Emma Kreuziger", "found_city": "Kenosha", "found_state": "WI", "found_country": "United States", "found_GPS_lat": "42.6212 N", "found_GPS_long": "87.8202 W", "found_year": 2021, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": null, "discovery_notes": "Dirt that was near a bush behind Tarble along the shoreline, was grassy there and close to tree roots.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-01T15:29:58-05:00", "date_modified": "2022-03-16T11:02:03-04:00" }, { "phage_name": "Kenosha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Kenosha because that is the name the my street back home where the sample was collected", "finder_name": "Kaitlynn Muhlenkamp", "found_city": "Kettering", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.689576 N", "found_GPS_long": "84.151184 W", "found_year": 2018, "p_institution": { "institution_code": "COCA", "institution_name": "Coastal Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/CoastalCarolinaUniversity.png", "institution_url": "http://www.coastal.edu/", "institution_city": "Conway", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "33.795617", "institution_longitude": "-79.01207" }, "enriched_sample": true, "discovery_notes": "The soil was dark and moist since it had just rained. Soil was sent in a bag through the mail", "isolation_temperature": 27, "growth_notes": "", "pcluster": { "cluster": "DJ", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques often vary in size and shape, rarely in perfect circles", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1035, "finishing_reactions": 0, "genome_length": 60899, "gcpercent": "51.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGCTCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 90, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenosha_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-05-29T14:30:42-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kenosha_flat.txt", "qced_genbank_file_date": "2019-05-29T14:30:42-04:00", "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN010761", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenosha_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kenosha.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenosha_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-11T19:22:29-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kenough", "old_names": "Dain", "program": null, "naming_notes": "Name: Kenough\r\n\r\nThis phage morphology might be turbid, but it is Kenough.\r\n\r\nPhages in lysogenic cycles are less likely to be used in phage therapy so it will never get to be like Doctor Barbie.", "finder_name": "Drake Strait", "found_city": "West Lafayette", "found_state": "IN", "found_country": "United Sates", "found_GPS_lat": "40.42617 N", "found_GPS_long": "86.92 W", "found_year": 2023, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "Collected:\r\nSept. 4th 2023\r\n2:30 p.m.\r\nSunny-89*F\r\nPartial shade location just west of Honors South (Purdue University) around base of a large tree", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Kenough is the phage pictured that has a more turbid morphology suggesting the phage might often be in the lysogenic cycle and kill bacteria more slowly.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenough_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-09-26T07:35:59-04:00", "date_modified": "2024-02-25T15:28:36-05:00" }, { "phage_name": "KenRB", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this phage after my Papa Kenneth. My Papa is one of the most amazing people I know, and although I don't get to see him much, I still look up to him in so many ways.", "finder_name": "Halle Brecht", "found_city": "Krum", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.267583 N", "found_GPS_long": "97.218576 W", "found_year": 2024, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Collected soil from in the northeastern part of Krum, Texas. The temperature was about 82 degrees in the morning, and the humidity was around 49%. The location is in a garden near a vegetable plant. I took the top layer of soil off and dug down about one and a half inches. The soil was slightly wet.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "A small, turbid, cloudy plaque.", "lysogeny_notes": "KenRB is determined to be lysogenic.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "venezuelae", "strain_name": "ATCC 10712", "strain_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10712", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KenRB_Plaque.tif", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/KenRB_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-08T07:57:25-04:00", "date_modified": "2025-04-04T11:37:35-04:00" }, { "phage_name": "Kenrey", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage is a combination of the founder's first and last name.", "finder_name": "Audrey Keneda", "found_city": "Bedford", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "32.8559 N", "found_GPS_long": "97.163 W", "found_year": 2020, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "This phage was found near Bedford Junior High during construction of the building. The soil found was a very light color, and was founded in a hot temperature close to 90 degrees Fahrenheit.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BK", "temperate": false }, "psubcluster": { "subcluster": "BK1" }, "morphotype": "", "plaque_notes": "The plaques are very clear and small. The diameter average is about .2mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-09-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2842, "finishing_reactions": 0, "genome_length": 129554, "gcpercent": "47.0", "end_type": "TREP", "repeat_length": 766, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 238, "num_tRNAs": 35, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenrey_Minimal_Final_OhSFO3o.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2023-05-05T16:36:55-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kenrey_flat_udBaNlW.txt", "qced_genbank_file_date": "2023-05-05T16:36:55-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OQ995430", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenrey_Plaque", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kenrey_Digest.jpeg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kenrey.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenrey_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-10-20T12:16:18-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kenrial", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage came from parts of our names. And the process we used to isolate our phage.", "finder_name": "Kendall Washington and Mckenna Schmidl", "found_city": "Owings Mills", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.42136 N", "found_GPS_long": "76.70146 W", "found_year": 2023, "p_institution": { "institution_code": "STEV", "institution_name": "Stevenson University", "institution_logo": "https://phagesdb.org/media/institutions/Stevenson_University_logo.png", "institution_url": "https://www.stevenson.edu/", "institution_city": "Owings Mills", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil sample was found\r\nthe left side of\r\nthe building of Wooded Way.\r\nThe soil was very dry.\r\nWe dug about 1/2 an inch to collect the sample.\r\nThe ambient temperature when collecting the temperature was 95°", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques have always been clear and non-uniformed.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenrial_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kenrial_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-14T15:54:44-05:00", "date_modified": "2024-02-25T15:28:31-05:00" }, { "phage_name": "KenRyan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our phage name stems from both team mabers's names, Ben-Ryan and Kenneth(Ken)", "finder_name": "Ben-Ryan Ofori-Koranteng, Kenneth Taveras", "found_city": "Montclair", "found_state": "NJ", "found_country": "United States of America", "found_GPS_lat": "40.86775 N", "found_GPS_long": "74.19984 W", "found_year": 2024, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "Phage discovery was successful. However, more work has to be done to study phage DNA and traits.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques were very small in size, and clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-25T15:16:19-04:00", "date_modified": "2024-04-25T15:16:19-04:00" }, { "phage_name": "Kent", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The reason I choose to name my phage Kent is because it is short for Kentucky, which is where I'm from.", "finder_name": "Morgan Gatewood", "found_city": "New Haven", "found_state": "CT", "found_country": "United States of America", "found_GPS_lat": "41.33333 N", "found_GPS_long": "72.945 W", "found_year": 2019, "p_institution": { "institution_code": "SCSU", "institution_name": "Southern Connecticut State University", "institution_logo": "https://phagesdb.org/media/institutions/SCSUlogo.jpg", "institution_url": "http://www.southernct.edu/", "institution_city": "New Haven", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "41.332498", "institution_longitude": "-72.94454" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected at Southern Connecticut State University on 09/06/2019. That day the outside temperature was 62 degrees Fahrenheit and in the previous days the weather had been on and off raining. On the day the discovery the location was damp/wet grass, there was some sunlight exposure, and cloudy. The soil sample was collected about 10feet away from the Southern pond and was 2 cm into the ground.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My phage morphology is very interesting because it has a sort of bullseye shape. The plaques are pretty small in diameter with it being 3mm. The outside edge of the plaques are a foggy/cloudy rim and then farther into the plaque there is a dark solid circle. In the very center the plaque is foggy/cloudy again. This is why it looks like a bullseye.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-10T21:31:58-04:00", "date_modified": "2020-09-17T14:11:15-04:00" }, { "phage_name": "KentuckyFried", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was a fun name for our bacteriophage that came from our love of Kentucky Fried Chicken.", "finder_name": "Katie Angel, Brooke Sworski", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6667 N", "found_GPS_long": "117.40507 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The sample was collected from a grass area on the lawn hill near the lake by Jepson Center on Gonzaga's campus. The soil was damp and easily extracted.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Our plaque morphology is circular 2.5 cm by 2.5 cm plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KentuckyFried_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/KentuckyFried_EMPic.tif", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/KentuckyFried_VirtualDigest.tif", "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-17T08:55:31-05:00", "date_modified": "2024-02-25T15:28:09-05:00" }, { "phage_name": "KentuckyRacer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name originates from the state the phage was found in as well as the race track it was found near.", "finder_name": "Andrew Adams and Ross Rider", "found_city": "Land Between the Lakes", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "36.74952 N", "found_GPS_long": "88.07441 W", "found_year": 2023, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": true, "discovery_notes": "Sample of soil was collected from an area of high automobile traffic at a dirt racing track in Land Between the Lakes National Recreational Area. The dirt was soft, but not too full of water and a dark brown color.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BE", "temperate": false }, "psubcluster": { "subcluster": "BE2" }, "morphotype": "SIPHO", "plaque_notes": "Phage plaques were always transparent and between 1-2mm in size. Only on extremely low concentration assays of the phage were plaques found smaller than 1mm.", "lysogeny_notes": "Lytic.", "seq_finished": true, "date_finished": "2024-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 538, "finishing_reactions": 0, "genome_length": 133791, "gcpercent": "49.3", "end_type": "TREP", "repeat_length": 12340, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 250, "num_tRNAs": 44, "num_tmRNAs": 1, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KentuckyRacer_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KentuckyRacer_Minimal_Final_qm6WgMg.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KentuckyRacer_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KentuckyRacer_CoverSheet.docx", "submitted_annotation_date": "2024-08-21T00:31:43-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KentuckyRacer.gbf", "qced_genbank_file_date": "2024-08-21T00:31:43-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ244013", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KentuckyRacer_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/KentuckyRacer_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/KentuckyRacer_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KentuckyRacer.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-03T09:43:16-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kenuha5", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the combination of Nur's nickname \"Ken\" with her lab partner's \"Nuha\". The number 5 reflects that the phage was found at the fifth trial of bacteriophage enrichment.", "finder_name": "Nur Ashykeen Mohd Fauzi", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.012583 N", "found_GPS_long": "105.269167 W", "found_year": 2017, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "The soil sample was quite damp and collected somewhere at bushes near the Rec. Center of the University of Colorado Boulder.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Clear spots with slight turbid around the edges\r\nApproximately 1-2nm\r\n48 hours at 37°C", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-11-01", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 296, "finishing_reactions": 0, "genome_length": 56502, "gcpercent": "61.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGAAGGCGC", "sequencing_notes": "This phage was sequenced as part of a mixed DOGEMS sample. The sequence of this genome was confirmed to belong to this phage by PCR.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenuha5_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenuha5_Minimal_Final_mJpLzQp.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kenuha5_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kenuha5_CoverSheet.pdf", "submitted_annotation_date": "2019-07-29T16:03:42-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kenuha5_flat.txt", "qced_genbank_file_date": "2019-07-29T16:03:42-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN369739", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenuha5_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kenuha5_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Kenuha5_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kenuha5.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenuha5_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Kenuha5_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-16T17:15:26-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "KenWill13", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kendall Thomas & Taylor Williams", "found_city": "Washington D. C.", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-05T23:51:39-05:00", "date_modified": "2015-04-29T14:32:35-04:00" }, { "phage_name": "Kenya1", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "Inspired by my country", "finder_name": "Fiona Maiyo", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.817897 S", "found_GPS_long": "30.942771 E", "found_year": 2013, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Found in enriched soil samples collected behind the chemistry lab at the University\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Has turbid areas in the plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenya1_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kenya1_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenya1_Plaque_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kenya1_EMPic_Thumbs.png", "dnam_file": null, "date_added": "2013-07-09T10:24:40-04:00", "date_modified": "2017-09-24T10:38:52-04:00" }, { "phage_name": "Kenyatta", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the greatest music artist of our generation.", "finder_name": "Andrew Stanley, Kyle MacLea", "found_city": "Manchester", "found_state": "NH", "found_country": "USA", "found_GPS_lat": "43.165928 N", "found_GPS_long": "70.93626 W", "found_year": 2023, "p_institution": { "institution_code": "UNHM", "institution_name": "University of New Hampshire at Manchester", "institution_logo": "https://phagesdb.org/media/institutions/unh_manchester.png", "institution_url": "", "institution_city": "Manchester", "institution_state": "NH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-04T15:23:31-05:00", "date_modified": "2023-12-21T10:01:34-05:00" }, { "phage_name": "Kenyon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name comes from my little brother's name.", "finder_name": "Jalen Jean-Baptiste", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "Sample was taken from in front of Howard University Hospital near the sign of the ambulance entrance.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-09-18T07:15:28-04:00", "date_modified": "2017-11-08T15:56:03-05:00" }, { "phage_name": "Kenz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Kenz came from my girlfriend's name. Her nickname is Kenz and I thought that it looked cool.", "finder_name": "Blake Williams", "found_city": "Oakbrook", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The soil was dry because the ground was frozen and had been left to sit. It was taken from under a bench in Bolingbrook, IL. It was a sunny day and was a bit chilly.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque Diameter: 1.0 mm\r\nPlaque Radius: 0.5 mm\r\n\r\nThe plaques that were produced had circular clear edges and were not fuzzy at all. The small plaques created a higher PFU for a webbed plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-04-29T13:04:41-04:00", "date_modified": "2025-07-11T12:34:15-04:00" }, { "phage_name": "Kenzers", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after founder's dog.", "finder_name": "Abigail J Harbison", "found_city": "Greenvile", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "41.412409 N", "found_GPS_long": "80.381343 W", "found_year": 2020, "p_institution": { "institution_code": "THIE", "institution_name": "Thiel College", "institution_logo": "https://phagesdb.org/media/institutions/thiel.png", "institution_url": "https://www.thiel.edu/", "institution_city": "Greenville", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Ground was sloped and dry. Due a drought", "isolation_temperature": 70, "growth_notes": "", "pcluster": { "cluster": "EB", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-12-07", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3293, "finishing_reactions": 0, "genome_length": 41261, "gcpercent": "66.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCTCCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 69, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenzers_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kenzers_Minimal_Final_ftl4T3f.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kenzers_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kenzers_CoverSheet.docx", "submitted_annotation_date": "2022-07-25T16:27:37-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kenzers_flat_FSgLPxz.txt", "qced_genbank_file_date": "2022-07-25T16:27:37-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP172875", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kenzers.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-09-04T08:13:59-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kenzie", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "The phage was named after my dog. The reason behind that is, dogs are regarded as man's best friends,so i want my phage to be the same, in terms of becoming man's best friends in trying to combat TB.", "finder_name": "Ryan Naicker", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.605791 S", "found_GPS_long": "31.237128 E", "found_year": 2016, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Kenzie was isolated from a soil sample taken from yard,near a tree. The soil was covered with leaf debris. The leaf debris was removed and soil was taken from the surface,approximately 3cm deep.\r\nThe soil was dry and brown. The soil has brown sand which have fine sand particles that encompass sea sand which have much larger sand particles. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are distinct,typically 2-3mm in diameter. Plaques formed in less than 24hrs incubation . Clear plaques were formed which appeared round and smooth.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kenzie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kenzie_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kenzie_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-07-12T09:19:22-04:00", "date_modified": "2020-07-24T16:19:06-04:00" }, { "phage_name": "Kenzo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this phage after a nickname my friends back home gave me.", "finder_name": "Mackenzie Haynes", "found_city": "", "found_state": "OH", "found_country": "United Staes", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "BGSU", "institution_name": "Bowling Green State University", "institution_logo": "https://phagesdb.org/media/institutions/BowlingGreenStateUniversity.jpg", "institution_url": "https://www.bgsu.edu/", "institution_city": "Bowling Green", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "41.379062", "institution_longitude": "-83.63134" }, "enriched_sample": null, "discovery_notes": "Found in the soil under an apple tree\r\ndry organic matter in soil\r\n12 inches down", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-12T14:39:21-05:00", "date_modified": "2020-09-17T14:11:46-04:00" }, { "phage_name": "Keoborus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ellie and Masti", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.7293 N", "found_GPS_long": "117.1638 W", "found_year": 2018, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-07T20:45:43-05:00", "date_modified": "2020-09-17T14:09:45-04:00" }, { "phage_name": "Keough", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage is named after the person who discovered the virus.", "finder_name": "Dillon Keough", "found_city": "New Haven", "found_state": "CT", "found_country": "United States", "found_GPS_lat": "41.233499 N", "found_GPS_long": "72.94175 W", "found_year": 2024, "p_institution": { "institution_code": "SCSU", "institution_name": "Southern Connecticut State University", "institution_logo": "https://phagesdb.org/media/institutions/SCSUlogo.jpg", "institution_url": "http://www.southernct.edu/", "institution_city": "New Haven", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "41.332498", "institution_longitude": "-72.94454" }, "enriched_sample": false, "discovery_notes": "The sample containing this phage was take from a site under a tree that was down hill from the Southern Connecticut State University community garden, located behind Davis Hall.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EK", "temperate": null }, "psubcluster": { "subcluster": "EK2" }, "morphotype": "PODO", "plaque_notes": "Plaques were approximately 1 mm in diameter and were uniformly round, with clear borders.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-04-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 173, "finishing_reactions": 0, "genome_length": 54232, "gcpercent": "59.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 56, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keough_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Keough_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Keough.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-25T13:52:08-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kepler", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "A famous scientist seemed fitting for a name since I'm all out of creative ones", "finder_name": "Patrick Rimple", "found_city": "Buffalo", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "42.93382 N", "found_GPS_long": "78.64562 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Came from a dirt pile used in landscaping", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AS", "temperate": true }, "psubcluster": { "subcluster": "AS2" }, "morphotype": "SIPHO", "plaque_notes": "plaques are less than 2 mm in size", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-09-11", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1546, "finishing_reactions": 0, "genome_length": 38449, "gcpercent": "66.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "GAGTTGCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 75, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kepler_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-09-01T22:31:19-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kepler.gbf", "qced_genbank_file_date": "2018-09-01T22:31:20-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", 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null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kepler26_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kepler26_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-17T23:12:27-05:00", "date_modified": "2024-02-25T15:28:18-05:00" }, { "phage_name": "Keraileeum", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The creative mind of an 18 year old who was inspired by odd Greek/roman names", "finder_name": "Jamaica Joyner", "found_city": "Paterson", "found_state": "NJ", "found_country": "United States", "found_GPS_lat": "40.912628 S", 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", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keraileeum_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-30T12:38:39-05:00", "date_modified": "2022-03-16T11:02:46-04:00" }, { "phage_name": "Kerberos", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Greek form “cerberus”…name of guardian of entrance to underworld in greek myth means “spotted”", "finder_name": "David Villarreal and Amelia Garcia", "found_city": "Houston", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "29.765300 N", "found_GPS_long": "95.359400 W", "found_year": 2015, "p_institution": { "institution_code": "HOUS", "institution_name": "University of Houston-Downtown", "institution_logo": "https://phagesdb.org/media/institutions/logo-uhd.png", "institution_url": "http://www.uhd.edu/", "institution_city": "Houston", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "29.766280", "institution_longitude": "-95.35917" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "", 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"submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kerberos_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kerberos_CoverSheet.pdf", "submitted_annotation_date": "2016-05-16T10:58:55-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kerberos_flat.txt", "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KX758538", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kerberos_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kerberos.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Kerberos.dnam5", "date_added": "2015-12-09T09:24:11-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Keres", "old_names": "Achlys", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Greek Goddess of chaos", "finder_name": "Geneva Capp, Kelly Evancich, and Krista Sreniawski", "found_city": "Kenosha", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": true, "discovery_notes": "A sample was collected from rich, moist topsoil under a bridge at Carthage College, in Kenosha Wisconsin (lat 42.624743, long -87.819433) on 9/25/15, when the temperature was 64 degrees Fahrenheit.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Temperate: plaques cloudy, between 1-2mm diameter, had fuzzy \"halos\" around plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Achlys_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Achlys_EMPic.JPG", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Achlys_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Achlys_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-16T14:21:35-05:00", "date_modified": "2020-09-17T14:06:53-04:00" }, { "phage_name": "Kerfuffle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Kerfuffle because there was quite a commotion in finding this phage. It took me a long time to isolate it and so I felt Kerfuffle (noun meaning commotion) suited it nicely. ", "finder_name": "Kamalini Ghosh ", "found_city": "Pittsburgh ", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.446944 N", "found_GPS_long": "79.918889 W", "found_year": 2012, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Soil was found outside of Bellefield Hall on the University of Pittsburgh Campus. The sample was collected beside a sidewalk near the front of the building. It was cloudy outside. It was warm but not humid. The soil was soft and dark brown. The soil was collected at 7:28 am on September 5, 2012. The sample was collected using my hands and was immediately placed into a plastic bag. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-10-16T08:38:27-04:00", "date_modified": "2020-09-17T14:10:55-04:00" }, { "phage_name": "Kerimonia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kerimonia comes from my last name and my grandpa's first name, Kerim. I thought I should name my phage this in honor of his memory for he passed away in the process of finding the phage.", "finder_name": "Ediz Kerim", "found_city": "Saint Louis", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.55726 N", "found_GPS_long": "90.40011 W", "found_year": 2023, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "This sample was collected into a Ziplock bag from a fenced-backyard with rich soil 2 to 4 inches below the ground. regularly and naturally maintained grass with frequent animal traffic. Area is shaded in the early morning with steady sun exposure throughout the afternoon.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Miniscule and transparent with cloudy edges and clear centers.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kerimonia_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kerimonia_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-03-24T08:16:20-04:00", "date_modified": "2024-02-25T15:28:19-05:00" }, { "phage_name": "Kerizion", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from a childhood game I played and a character I made up for the game.", "finder_name": "Isabella Grisham", "found_city": "Graham", "found_state": "TX", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The sky was sunny and clear. The top soil was dry and became moist as you dug more deeply. The approximate temperature was 97 degrees Fahrenheit.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The notes I have taken are that most of them are 1 mm, but some were larger. The plaques were clear and easily noticeable.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "bicolor", "strain_name": "NRRL B-3897", "strain_species": { "id": 74, "genus": "Streptomyces", "species_name": "bicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 74, "genus": "Streptomyces", "species_name": "bicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kerizion_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kerizion_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kerizion_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-09T15:12:22-05:00", "date_modified": "2025-09-04T14:57:50-04:00" }, { "phage_name": "Kerkope", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage is named after Kerkopes, mischievous monkey-like thieves in Greek mythology. This phage was mischievous and took 3 attempts to find (hence the mischievousness) and I like monkeys :)", "finder_name": "Matthew Genchev", "found_city": "Los Angeles", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "34.02259 N", "found_GPS_long": "118.28563 W", "found_year": 2022, "p_institution": { "institution_code": "USOC", "institution_name": "University of Southern California", "institution_logo": "https://phagesdb.org/media/institutions/usc.png", "institution_url": "https://www.usc.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The phage was found right outside of USC's Music Complex in moist soil, next to foliage.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are small (about 1mm in diameter), circular, with fuzzy edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kerkope_Plaque_DDYs1Sf.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kerkope_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kerkope_Digest_9U2pqTf.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-14T08:22:23-05:00", "date_modified": "2024-02-25T15:27:54-05:00" }, { "phage_name": "Kermit", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Erin Betzler", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.45 N", "found_GPS_long": "79.96 W", "found_year": 2014, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil was obtained about three feet from a tree.\r\nSample was taken at night\r\nWeather was dry\r\nSoil was slightly moist, contained some rocks and plant particles.\r\nColor: brown/red-ish\r\nTexture: grainy, not tightly packed", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kermit_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kermit_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kermit_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kermit_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kermit_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-09-15T09:35:17-04:00", "date_modified": "2020-07-27T15:18:54-04:00" }, { "phage_name": "Kermit24", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kelsey Towle and Kati Pourfarzib", "found_city": "Cleveland", "found_state": "TN", "found_country": "United States", "found_GPS_lat": "35.172778 N", "found_GPS_long": "84.864722 W", "found_year": 2024, "p_institution": { "institution_code": "LEEU", "institution_name": "Lee University", "institution_logo": "https://phagesdb.org/media/institutions/lee_university.png", "institution_url": "https://www.leeuniversity.edu/", "institution_city": "Cleveland", "institution_state": "TN", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "I went to a soccer practice field \r\n\r\nI used a stick to dig up some dirt, dug about 1.5- 2 inches into the ground \r\n\r\nI placed the dirt into the bag without touching it with my hand (to prevent spread of bacteria)", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-19T12:49:14-05:00", "date_modified": "2025-04-04T11:37:20-04:00" }, { "phage_name": "Kermit25", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Raelynn Parmely", "found_city": "Grant Park", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "41.33 N", "found_GPS_long": "87.49 E", "found_year": 2013, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-11-14T12:42:30-05:00", "date_modified": "2020-09-17T14:05:27-04:00" }, { "phage_name": "Kermufalus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jacob Flynn", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.331115 N", "found_GPS_long": "76.621934 W", "found_year": 2016, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "This phage was found in dirt outside of the Undergraduate Teaching Labs at Johns Hopkins University. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "The plaque was round with defined edges. It had a diameter of approximately 1 mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kermufalus_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kermufalus_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kermufalus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kermufalus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-12-06T22:56:53-05:00", "date_modified": "2020-09-17T14:09:25-04:00" }, { "phage_name": "Kern", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage comes from the first initial of each group member's name.", "finder_name": "N Nomula, R Garelnabi, E Bach, K Schober", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.3893 N", "found_GPS_long": "72.52969 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This phage was found near South College at UMass Amherst in dry, frozen soil near sidewalk.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "2 mm, Turbid, Circular.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-31T13:11:22-04:00", "date_modified": "2025-03-31T13:11:22-04:00" }, { "phage_name": "KernelSanders", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Play on Kentucky Fried Chicken's founder name", "finder_name": "Diego De La Torre Campos", "found_city": "Blacksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.219598 N", "found_GPS_long": "80.42449 W", "found_year": 2015, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Isolation temperature: 70 F\r\nLocation found: 2cm deep form the edge of Koi pond, near the Horticulture garden at Virginia Tech campus.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Hard to tell because only picture available is from webbed plate.\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KernelSanders_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KernelSanders_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/KernelSanders_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KernelSanders_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KernelSanders_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-09T16:25:39-05:00", "date_modified": "2020-09-17T14:06:24-04:00" }, { "phage_name": "KeRo", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "Relative", "finder_name": "Hylton Rodel", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.81179 S", "found_GPS_long": "30.916246 E", "found_year": 2014, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil Sample obtained from pot-plant containing a mint shrub, soil was moist (and regularly watered) and originally came from the GPS location 27.760798S 30.73509E (Outskirts of a small town known as Vryheid in South Africa). The soil likely contained composting materials and bovine waste matter. Lysate in first round of purification and may contain contaminant phage RoZara (isolated from same soil sample).", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "KeRo phage plaques are uniformly circular and clear and have a diameter of approximately 1.5 - 2mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-07-30T15:01:20-04:00", "date_modified": "2017-09-24T13:34:49-04:00" }, { "phage_name": "Kerouac", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Author Jack Kerouac (On the R, Dharma bums)was the inspiration for naming this bacteriophage. Where this virus was isolated from felt similar to that of Kerouac's literary style: breathing, free, roaming, gurgle, pop of the river water at it's edges. Freedom & exploration - - - like jazz music; descriptions of the beat generation.", "finder_name": "Jessica Stockert", "found_city": "Aberdeen", "found_state": "SD", "found_country": "United States", "found_GPS_lat": "45.578109 N", "found_GPS_long": "98.421446 W", "found_year": 2019, "p_institution": { "institution_code": "NOST", "institution_name": "Northern State University", "institution_logo": "https://phagesdb.org/media/institutions/NOST.png", "institution_url": "https://www.northern.edu/", "institution_city": "Aberdeen", "institution_state": "SD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Environmental sample was taken from wrack water on August 31, ~8:30 am along the Elm river; including some foam, a little sludge and soil. A few snails along with some algae and microinvertebrates. A light, \"airy\", smelling of fresh river water sample which centrifuged quick and filtered easily.", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Lytic on G. rubripertincta, on different hosts, appeared lysogenic. 0.5 -1 mm in diameter; rarely larger than that.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-01-08T11:30:39-05:00", "date_modified": "2020-01-08T11:30:39-05:00" }, { "phage_name": "Kerr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We got the idea for this name by using a random fantasy name generator. The first name it generated was Keer, but it slowly became Kerr as we continued working on the phage.", "finder_name": "Isaac Chandler and Adi Serrano", "found_city": "Statesville", "found_state": "NC", "found_country": "United States of America", "found_GPS_lat": "35.799806 N", "found_GPS_long": "80.890146 W", "found_year": 2021, "p_institution": { "institution_code": "MTCH", "institution_name": "Mitchell Community College", "institution_logo": "https://phagesdb.org/media/institutions/MTCH.png", "institution_url": "https://mitchellcc.edu/", "institution_city": "Statesville", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The phage was found in a chicken run. The soil was dug about 3cm down. the soil was moist. It was originally found as Eula by Travis.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques slightly varied in size, but the variation could be because two different plaques combined and formed a single plaque, which happened while we were working on the phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kerr_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kerr_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kerr_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kerr_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kerr_EMPic_Thumb.png", "dnam_file": null, "date_added": "2021-11-03T09:07:01-04:00", "date_modified": "2022-03-16T11:01:41-04:00" }, { "phage_name": "Kerrigan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Sarah Louise Kerrigan, also known as the \"Queen of Blades\" from the StarCraft series is the leader of the Swarm and commands armies of the Zerg. ", "finder_name": "Sam Brown", "found_city": "Oxford", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.512778 N", "found_GPS_long": "84.729444 W", "found_year": 2015, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "Sample found near a stream in a lightly forested area. Stream contained frogs, as it was active and contained water.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Large, circular lytic plaques with bull's eye morphology. Later plates contained small, more opaque plaques that suggested a lysogenic morphology.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kerrigan_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kerrigan_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kerrigan_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kerrigan_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kerrigan_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-02T13:25:53-05:00", "date_modified": "2020-09-17T14:06:39-04:00" }, { "phage_name": "Kerry", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Leon Lin", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.431831 N", "found_GPS_long": "79.952495 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Found in the soil of Schenley Plaza park", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "DJ", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "small, clear, about 1mm in diameter", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-09-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1407, "finishing_reactions": 0, "genome_length": 59608, "gcpercent": "51.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGCTCT", "sequencing_notes": "at 23502 bp approximately 25% of reads contain an A instead of consensus G", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 93, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kerry_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-02-07T10:36:37-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kerry.gb", "qced_genbank_file_date": "2018-02-07T10:36:37-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MG962369", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kerry_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kerry.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kerry_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Kerry.dnam5", "date_added": "2016-07-11T16:15:59-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kerrycaverga", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Just for fun!", "finder_name": "Julisa Aburto Sanchez", "found_city": "Lincoln", "found_state": "NE", "found_country": "United States", "found_GPS_lat": "40.830941 N", "found_GPS_long": "96.651653 W", "found_year": 2021, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": false, "discovery_notes": "Close to my science building.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-19T12:21:16-05:00", "date_modified": "2025-07-11T12:34:11-04:00" }, { "phage_name": "Kersh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Clayton Kershaw, Los Angeles Dodgers pitcher. ", "finder_name": "Joseph Chang", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.876853 N", "found_GPS_long": "117.239147 W", "found_year": 2014, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": false, "discovery_notes": "From compost heap of decomposing eucalyptus leaves. Humid weather, compost heap damp. Collected from underneath top layer of soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "After initial enrichment, the plaque was about 3-4.5 mm in diameter with a turbid outer ring. During early stages of purification however, the phage was only 1-2 mm in diameter with no signs of lysogeny and was extremely clear. Plaque morphology returned to early stages of enrichment during lysates and harvesting.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-02-12", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1113, "finishing_reactions": 0, "genome_length": 60190, "gcpercent": "61.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTAGGCGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 107, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kersh_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kersh_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kersh_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kersh_CoverSheet.docx", "submitted_annotation_date": "2015-07-06T18:31:42-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kersh_flat.txt", "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KX610764", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kersh_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kersh_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kersh_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kersh.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kersh_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kersh_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Kersh_KeNzwQ5.dnam5", "date_added": "2014-12-10T14:44:28-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kert", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jessmarie Gonzalez", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.2071 N", "found_GPS_long": "97.148444 W", "found_year": 2011, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The soil type is sandy and dry. The temperature was around 90° F. The day and time the soil was collected was Sept. 4, 2011 and around 3 o'clock. The location the soil was collected was between the street and Kerr Hall parking lot.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The size was 0.2mm for the majority of them but had two other sizes which was 0.1 mm and 0.3 mm. The plaque was partly cloudy. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kert_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kert_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kert_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kert_Plaque_Thumb_67zbEPk.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kert_EMPic_Thumb.png", "dnam_file": null, "date_added": "2011-10-26T10:59:14-04:00", "date_modified": "2020-08-11T14:06:07-04:00" }, { "phage_name": "KeSha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Deena Dubrow", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-07T13:11:45-05:00", "date_modified": "2019-11-07T13:11:45-05:00" }, { "phage_name": "Keshi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Keshi is a name derived from the shorthand of the phage's sample discovery site, the Kishwaukee River. Not only does the name reflect its original home but it is also the stage name of an American musician and songwriter.", "finder_name": "Chandler Gardner", "found_city": "Marengo", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "42.26643 N", "found_GPS_long": "88.664507 W", "found_year": 2024, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": true, "discovery_notes": "Found within the saturated soil of the Marengo Illinois Kishwaukee River.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keshi_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Keshi_EMPic_iMPeYN0.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Z_1.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/keshi200x200.png", "dnam_file": null, "date_added": "2024-10-03T10:40:54-04:00", "date_modified": "2025-04-04T11:37:41-04:00" }, { "phage_name": "Keshu", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Navisha Dookie", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "30.945264 E", "found_GPS_long": "29.817169 S", "found_year": 2009, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K3" }, "morphotype": "SIPHO", "plaque_notes": "Medium small, circular, and turbid plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-10-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": 728, "finishing_reactions": 8, "genome_length": 61251, "gcpercent": "67.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 101, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KP027199", "refseq_accession": "NC_026603", "plaque_file": "https://phagesdb.org/media/plaquePics/Keshu_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Keshu_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Keshu.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keshu_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Keshu_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Keshu.dnam5", "date_added": "2011-05-23T04:27:27-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kessi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Michael Pham", "found_city": "", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.866811 N", "found_GPS_long": "117.216734 W", "found_year": 2009, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "Located UCSD Composite Site near Preuss School. Dark Brown dry heavy decomposition soil. Soil depth 5in at 32 degrees Celsius", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "3mm/clear/incubation for 24 hours at 37 degrees Celsius.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kessien", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Derived from the name of the gardener", "finder_name": "Hamidu Tei Mohammed", "found_city": "Bethlehem", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.661846 N", "found_GPS_long": "75.410103 W", "found_year": 2022, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "Soil taken near a garden, from a rabbit hole which was created after a tree was uprooted. Soil is gritty, black and lots of roots.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "2 to 3 mm plaques result after 48 hours of incubation.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kessien_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kessien_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kessien_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kessien_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-06-22T14:04:45-04:00", "date_modified": "2025-09-02T16:10:55-04:00" }, { "phage_name": "Kessy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We combined both of our names, Kate and Jessy, in order to find a name that has meaning to both of us.", "finder_name": "Jessica Bockius and Kate Shupe", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.006113 N", "found_GPS_long": "105.292501 W", "found_year": 2025, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Soil was collected on a mountainside underneath a tree. Sample was collected on January 17th, 2025 at 3:49PM.", "isolation_temperature": -2, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were ranging in 2-4mm in diameter and cloudy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kessy_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kessy_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-23T13:29:08-04:00", "date_modified": "2025-04-29T14:30:14-04:00" }, { "phage_name": "Ketchup", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Ketchup is my favorite condiment. ", "finder_name": "Madison Beppler", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.454165 N", "found_GPS_long": "79.94266 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil was a bit dry and had different kinds of debris mixed in with the soil. The weather outside was very hot and humid with cloudy skies. The soil I collected was in a shaded part of the ground and was not hit with direct sunlight.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were about 2mm in diameter and were clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Ketchup_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Ketchup_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Ketchup_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Ketchup_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Ketchup_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-09T11:29:00-04:00", "date_modified": "2020-09-17T14:10:32-04:00" }, { "phage_name": "Ketrama", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A mixture of the first names of the founders.", "finder_name": "Tram-Ahn Cai and Keturah Tatum", "found_city": "Colorado Springs", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "38.778098 N", "found_GPS_long": "104.832571 W", "found_year": 2015, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "moist soil due to snow underneath a tree within a public park close to foot traffic.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "~3mm, no halos or turbid edges, 48h, 37C incubation", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Ketrama_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Ketrama_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Ketrama_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-07-17T10:20:53-04:00", "date_modified": "2020-09-17T14:06:40-04:00" }, { "phage_name": "KettleBell", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Malia Cassel & Paulina Naranjo", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "48.28422 N", "found_GPS_long": "119.69833 W", "found_year": 2025, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "In soil surrounded by a free roam chickens.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear ring, precise circle.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KettleBell_Plaque_XZ0RsrY.JPG", "em_file": "https://phagesdb.org/media/emPics/KettleBell_EMPic_lbRSZY6.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kettlebell_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/KettleBell_TEM_thumb.png", "dnam_file": null, "date_added": "2025-02-18T15:41:05-05:00", "date_modified": "2025-05-01T15:20:31-04:00" }, { "phage_name": "KevalCody", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name is a combination of my husband and my name. ", "finder_name": "Valery Cody", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "39.979756 N", "found_GPS_long": "84.019986 W", "found_year": 2015, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "August 24, 2015\r\nTemperature was 88 degrees\r\nSoil from the shade in a flower bed\r\nSoil sample was dark \r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "lysogenic 2mm ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-24T11:37:04-05:00", "date_modified": "2020-09-17T14:06:40-04:00" }, { "phage_name": "Kevanna", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the names of the person who found it (Anna-Serena) and her father (Kevin) who shared his birthday with the discovery of this phage.", "finder_name": "Anna-Serena Jones", "found_city": "Washington", "found_state": "DC", "found_country": "US", "found_GPS_lat": "38.92759 N", "found_GPS_long": "77.039957 W", "found_year": 2022, "p_institution": { "institution_code": "HHMI", "institution_name": "Howard Hughes Medical Institute", "institution_logo": "https://phagesdb.org/media/institutions/hhmi.jpg", "institution_url": "http://www.hhmi.org/", "institution_city": "Chevy Chase", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "the sample from which this phage was isolated was mostly wet mulch and leaves collected from a garden bed.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-01-11", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3693, "finishing_reactions": 0, "genome_length": 17441, "gcpercent": "68.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kevanna_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kevanna_Minimal_Final_NmHq6p8.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kevanna_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kevanna_CoverSheet.docx", "submitted_annotation_date": "2024-09-01T23:25:46-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kevanna_flat.txt", "qced_genbank_file_date": "2024-09-01T23:25:46-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ362675", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kevanna_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kevanna.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/kevanna_thumbnail.jpg", "dnam_file": null, "date_added": "2022-10-25T15:10:31-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kevers", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Kevers after my cousin who died in the spring of 2017, right after I discovered the phage. Kevers was his nickname and I wanted to name the phage after him.", "finder_name": "Krista Haglund", "found_city": "Clam Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "45.715117 N", "found_GPS_long": "92.291615 W", "found_year": 2017, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "It was found in a soy bean field in Frederic, Wisconsin. The soil was moist, dark, loose and sandy. Found ~90 feet away from the site that the phage Finch was discovered. It was also discovered along with the phage Sommer. The soil depth was 38.1 mm deep. It was collected on April 8, 2017. It was 65 degrees Fahrenheit, windy, slightly hazy, and sunny.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Pin-point, round, clear,uniform in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "erythropolis", "strain_name": "RIA 643", "strain_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "15903", "genbank_accession": "", "strain_information": "Originally listed on ATCC as Rhodococcus globerulus." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kevers_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kevers_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kevers_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kevers_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-07T16:12:38-05:00", "date_modified": "2020-09-17T14:10:24-04:00" }, { "phage_name": "Kevgo", "old_names": "KF011915", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The numbers are a date, and the letters are initials.", "finder_name": "Faith Shaw", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.431503 N", "found_GPS_long": "78.859997 W", "found_year": 2015, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": null, "discovery_notes": "Found on the side of the Bioscience building, in moist soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plaques were small and in large quantities. They were not hard to work with. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kevgo_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kevgo_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-12T22:04:43-05:00", "date_modified": "2020-09-17T14:06:48-04:00" }, { "phage_name": "Kevin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Julie Donna", "found_city": "Fairfield", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.3071 N", "found_GPS_long": "84.51163 W", "found_year": 2013, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "It was from soil in the woods.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques somewhat small, usually ranging from 2mm to 5mm in diameter.", "lysogeny_notes": "Turbid plaques indicate a lysogenic phage.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kevin_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kevin_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kevin_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kevin_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kevin_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2013-10-28T16:04:58-04:00", "date_modified": "2020-09-17T14:06:45-04:00" }, { "phage_name": "Kevin1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of my phage, Kevin, is named after his awesome founder Kevin Zhang.", "finder_name": "Kevin Zhang", "found_city": "Naugatuck", "found_state": "CT", "found_country": "USA", "found_GPS_lat": "41.490695 N", "found_GPS_long": "73.056109 W", "found_year": 2016, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "My soil sample was found in my backyard at a temperature of 0 degrees celsius in the winter. It was found next to a tree about 2 inches deep into the ground. The soil sample was also initially very solid and hard because of the cold temperature.", "isolation_temperature": 0, "growth_notes": "", "pcluster": { "cluster": "N", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are all similar in size and in shape. They are all circular and about 2 mm in diameter. Plaques on the plates are pretty consistent in terms of morphology and size.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-10-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 6219, "finishing_reactions": 0, "genome_length": 41988, "gcpercent": "66.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "CCCGCCGCCCTCG", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 69, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kevin1_Minimal_Final_ROGFFVm.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-02-12T12:55:41-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kevin1_flat.txt", "qced_genbank_file_date": "2019-02-12T12:55:41-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK524500", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kevin1_Plaque.docx", "em_file": "https://phagesdb.org/media/emPics/Kevin1_EMPic.docx", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kevin1.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kevin1-EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-05-01T22:17:51-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kevin2", "old_names": "RoyalNeo", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We thought of many names but they were all taken so I thought of two random names of fish and put them together to make RoyalNeo.", "finder_name": "Lexy Wagner, Anna Paul, Chase B, and Mikayla", "found_city": "Sharon", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "41.27416 N", "found_GPS_long": "80.458561 W", "found_year": 2022, "p_institution": { "institution_code": "THIE", "institution_name": "Thiel College", "institution_logo": "https://phagesdb.org/media/institutions/thiel.png", "institution_url": "https://www.thiel.edu/", "institution_city": "Greenville", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "We adopted the phage from Mikayla Harrison because none of our plates showed phage. She found her phage from a creek in her backyard. This is also where she found her phage BaileyBlu.", "isolation_temperature": -5, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": 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", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. 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Plaques stayed the same size throughout sequencing and purifications.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-12-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3457, "finishing_reactions": 0, "genome_length": 56212, "gcpercent": "50.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGCCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 90, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KevinMinion_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KevinMinion_Minimal_Final_hdO4Ywh.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KevinMinion_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KevinMinion_CoverSheet.docx", "submitted_annotation_date": "2025-06-27T09:39:06-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KevinMinion_flat.txt", "qced_genbank_file_date": "2025-06-27T09:39:06-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV876946", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KevinMinion_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KevinMinion_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KevinMinion_Digest.jpeg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KevinMinion.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/114-1_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/114-1_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-11-19T13:19:41-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KevinPhangos", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after great Gonzaga basketball point guard Kevin Pangos", "finder_name": "Hanna Stockelman and Mark Ornelas", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667082 N", "found_GPS_long": "117.402841 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": null, "discovery_notes": "Found:\r\nN 47.667082\r\nE -117.4028410\r\n\r\nIn front of Hughes Hall, Gonzaga University Spokane, WA, USA", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid on periphery\r\nClear in center. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-04-07T15:38:23-04:00", "date_modified": "2020-09-17T14:06:57-04:00" }, { "phage_name": "KevinsChili", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Season 5, Episode 24 of The Office. Kevin brings in his famous chili.", "finder_name": "Aleigh Consoli, Sarah Pettit", "found_city": "Arbutus", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KevinsChili_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/KevinsChili_EMPic.JPG", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KevinsChili_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KevinsChili_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-10-02T13:07:27-04:00", "date_modified": "2020-09-17T14:11:11-04:00" }, { "phage_name": "Kevonysis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Taken from her origin of my name with a twist of the scientific suffix \"-isis\" meaning breaking down, losing, dissolving, dissolution...", "finder_name": "D'Anthony Davis", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.743635 N", "found_GPS_long": "84.416309 W", "found_year": 2016, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "Found in the flower garden in front of Health Center. The texture of the soil was slightly moist. The temperature 89 degrees Fahrenheit. The Cluster is L and the sub cluster is L2.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-28T16:47:56-05:00", "date_modified": "2020-09-17T14:07:34-04:00" }, { "phage_name": "Kewpiedoll", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The virus is named after Laura's sister, Lorena. Her eyes reminded people of a Kewpie doll.", "finder_name": "Laura JoAn Powell, Umar Sahi and Hari Kotturi", "found_city": "Santa Rosa", "found_state": "NM", "found_country": "USA", "found_GPS_lat": "34.966389 N", "found_GPS_long": "104.87 W", "found_year": 2018, "p_institution": { "institution_code": "UCOK", "institution_name": "University of Central Oklahoma", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofCentralOklahoma.JPG", "institution_url": "https://www.uco.edu/", "institution_city": "Edmond", "institution_state": "OK", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil was collected from a farm in Santa Rosa New Mexico.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "DE", "temperate": false }, "psubcluster": { "subcluster": "DE1" }, "morphotype": "SIPHO", "plaque_notes": "Plaque has a clear center with a halo. It is approximately 2mm in diameter with the halo.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-03-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 859, "finishing_reactions": 0, "genome_length": 59473, "gcpercent": "67.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 86, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kewpiedoll_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kewpiedoll_Minimal_Final_QKuYZfI.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kewpiedoll_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kewpiedoll_CoverSheet.pdf", "submitted_annotation_date": "2022-07-26T20:34:37-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kewpiedoll_flat.txt", "qced_genbank_file_date": "2022-07-26T20:34:37-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "NRRL B-16283", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "This strain seems to be distinct from the ATCC 25594 strain, though they are cross-listed." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP172877", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kewpiedoll_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kewpiedoll_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kewpiedoll_Digest.pptx", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kewpiedoll.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kewpiedoll_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kewpiedoll_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-30T11:44:57-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KewpieMayo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kewpie Mayo is a nice condiment!", "finder_name": "Mitra Mahadevan, Sanjana Karthik", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States of America", "found_GPS_lat": "39.958611 N", "found_GPS_long": "75.19 W", "found_year": 2024, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Damp, by the lawn, under tree shade; was made through direct isolation", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KewpieMayo_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-21T10:02:06-05:00", "date_modified": "2025-04-04T11:37:34-04:00" }, { "phage_name": "Keyes", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Since we had halophage, we thought it would be appropriate to name our phage after a character from the Halo games.", "finder_name": "Julianne Dejoie & Ben Howard", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.425153 N", "found_GPS_long": "86.91608 W", "found_year": 2018, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "Date Collected: 8/27/18\r\nTemperature: 63°F\r\nSoil Moisture: Damp\r\nRelation to Foot Traffic: Soil near concrete wall,\r\nclose to foot traffic\r\nDepth of Digging: 2 cm", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Halophage, cloudy but visible to identify on the plate.", "lysogeny_notes": "Did not complete.", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4044, "finishing_reactions": 0, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "Upon sequencing, this phage was found to be 100% identical to Ochi17, a phage found at the same institution the previous year. Thus, it was marked as a duplicate.", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keyes_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Keyes_EMPic.jpg", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Keyes_VirtualDigest.png", "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keyes_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Keyes_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-25T14:02:18-04:00", "date_modified": "2020-09-17T14:10:38-04:00" }, { "phage_name": "KeyLeech", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Key is part of a nickname and Leech is the last name of a character.", "finder_name": "Meiyan Zhou, Katie Liang, Riya Patel, Owen Murphy", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.390547 N", "found_GPS_long": "72.522568 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "It was found near the Durfee Conservatory which houses a variety of plants and contains a pond of koi fish.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "It is small, about 2 millimeters, and clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/keyleech_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/keyleech_empic_thumb.png", "dnam_file": null, "date_added": "2023-03-29T08:08:08-04:00", "date_modified": "2024-10-03T12:08:19-04:00" }, { "phage_name": "Keylime", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Anne Duessel", "found_city": "Gibsonia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.604431 N", "found_GPS_long": "79.987367 W", "found_year": 2011, "p_institution": { "institution_code": "HAMP", "institution_name": "Hampton High School", "institution_logo": "https://phagesdb.org/media/institutions/http___www.ht-sd.bmp", "institution_url": "http://www.htsd.k12.pa.us/page.cfm?p=2754", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found in January, however, ground was not frozen.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium sized, transparent.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keylime_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keylime_Plaque_Thumb.jpeg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-04-11T05:18:21-04:00", "date_modified": "2021-01-28T11:04:10-05:00" }, { "phage_name": "Keyport", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Connor Daukshus and Josh Kim", "found_city": "Montclair", "found_state": "NJ", "found_country": "United States of America", "found_GPS_lat": "40.8623 N", "found_GPS_long": "74.1978 W", "found_year": 2019, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-13T22:47:17-05:00", "date_modified": "2021-01-28T11:04:40-05:00" }, { "phage_name": "Keziacharles14", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "andriamalala Kezia Fandresena", "found_city": "Ranomafana", "found_state": "CA", "found_country": "Madagascar", "found_GPS_lat": "21.253333 S", "found_GPS_long": "47.0 E", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Isolated at room temperature.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A9" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-09-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3606, "finishing_reactions": 0, "genome_length": 53549, "gcpercent": "61.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCAGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 93, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Keziacharles14_Minimal_Final_fRZGelt.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-07-24T15:58:45-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Keziacharles14_rxxSJkp.gbf", "qced_genbank_file_date": "2019-08-09T16:45:33-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN310542", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Keziacharles14_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Keziacharles14_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Keziacharles14.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Keziacharles14_Plaque_Thumb_MLV494q.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KeziaCharles14_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Keziacharles14_9VvO7BL.dnam5", "date_added": "2018-09-17T17:49:00-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Keziah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after one of the main antagonists in H.P. Lovecraft's, \"The Dreams In The Witch House\". The character is a witch named Keziah Mason that has advanced so far into the sciences that she can transcend dimensions. This is a tribute to the author.", "finder_name": "Bruce Michaud", "found_city": "New Haven", "found_state": "CT", "found_country": "USA", "found_GPS_lat": "41.335139 N", "found_GPS_long": "72.941917 W", "found_year": 2015, "p_institution": { "institution_code": "SCSU", "institution_name": "Southern Connecticut State University", "institution_logo": "https://phagesdb.org/media/institutions/SCSUlogo.jpg", "institution_url": "http://www.southernct.edu/", "institution_city": "New Haven", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "41.332498", "institution_longitude": "-72.94454" }, "enriched_sample": true, "discovery_notes": "Soil sample was taken from underneath a pumpkin in the SCSU garden. Surrounding vegetation includes sunflowers, eggplant, peppers, and watermelon. Because of the plant above it, the soil received little to no sunlight daily. Day of retrieval was sunny and there was no precipitation for over a week prior. ", "isolation_temperature": 42, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-10-02T12:11:44-04:00", "date_modified": "2020-09-17T14:06:36-04:00" }, { "phage_name": "KFPoly", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Karrie Rossi, Fei Peng", "found_city": "Easthampton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.266800 N", "found_GPS_long": "72.669000 W", "found_year": 2012, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "Trail on Gosselin Street in Easthampton, MA. Soil collected on the edge of a small pond from underneath a fallen mossy oak log", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A4" }, "morphotype": "SIPHO", "plaque_notes": "Head shape, initials of lab partners.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-04-16", "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1800, "finishing_reactions": 0, "genome_length": 51365, "gcpercent": "63.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 88, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KFPoly.gbf", "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KY204249", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KFPoly.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/KFPoly.dnam5", "date_added": "2012-12-12T14:27:54-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Khadka", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my plaque, Khadka, after my last name because my last name is very close to me. As suggested by our TA, I could not give my plaque a very silly name or violate the copyrights. Plus if my research does expand in the future, I want something very close to me to be recognized.", "finder_name": "Shristi Khadka", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.212148 N", "found_GPS_long": "97.147929 W", "found_year": 2020, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The soil sample that the plaques were found is was gotten from the in campus area of UNT. After being unsuccessful in finding plaques in my previous two soil samples, I was frustrated and started looking for a place around campus that was the dirtiest, as instructed by our TA. There is a specific place at UNT where the campus squirrels are usually found. I assumed that place had their waste as well, so went and started digging the soil. While digging I found earthworms. I suspected the soil to be dirty because earthworms usually clean contaminated soil. So, I took the soil to the lab hoping for the best results and found plaques. The temperature was 45 degrees Fahrenheit and the air quality was 38 at 6:57 pm.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque found from the soil sample of phage Khadka was 0.7mm. It was a medium sized, clear and individual plaque taken from the right hand side of the webbed Phage titer III plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khadka_Plaque_P3Ca7zS.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Khadka_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-04-05T18:34:02-04:00", "date_modified": "2021-01-28T11:04:07-05:00" }, { "phage_name": "KhalDrogo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after loved Game of Thrones character, Khal Drogo", "finder_name": "Katie Barber and Paul Ramsey", "found_city": "Newburgh", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.0 N", "found_GPS_long": "74.0 E", "found_year": 2017, "p_institution": { "institution_code": "MSMC", "institution_name": "Mount Saint Mary College", "institution_logo": "https://phagesdb.org/media/institutions/MountSaintMaryCollege.JPG", "institution_url": "http://www.msmc.edu/", "institution_city": "Newburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.512859", "institution_longitude": "-74.01247" }, "enriched_sample": false, "discovery_notes": "Found underneath tree outside of the girls dorm, Sakac, on the campus of Mount Saint Mary College.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Unusually large plaques with very clear, lysogenic halos ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-17T21:52:31-05:00", "date_modified": "2020-09-17T14:08:47-04:00" }, { "phage_name": "Khaleesi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage came from Daenerys Targaryen from \"Game of Thrones\". Khaleesi happens to be a lytic phage, and it only seemed fitting that one of the most ruthless queens on the TV show -and book- could be represented by our phage. ", "finder_name": "Alex Kelsey & Ryan Schuck", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.994 N", "found_GPS_long": "83.013 W", "found_year": 2014, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "Small Plaques (1.1-1.2 mm in diameter)\r\nClear Plaques", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-01-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 857, "finishing_reactions": 0, "genome_length": 155251, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 232, "num_tRNAs": 33, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Khaleesi_Minimal_Final_UJirVAD.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-10-21T10:38:01-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Khaleesi.gbf", "qced_genbank_file_date": "2018-10-21T10:38:01-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK112545", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Khaleesi_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Khaleesi.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Khaleesi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-03T11:47:51-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Khalia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a mix of our names, Khadija and Lia.", "finder_name": "Lia Artis Khadija Harris ", "found_city": "burlington", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "NCAT", "institution_name": "North Carolina A & T State University", "institution_logo": "https://phagesdb.org/media/institutions/NCAT_logo.png", "institution_url": "http://www.ncat.edu/", "institution_city": "Greensboro", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "36.077032", "institution_longitude": "-79.76893" }, "enriched_sample": true, "discovery_notes": "The process of finding the phages was difficult. We had to do multiple serial dilutions, but in the end we got a good sample of DNA.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are slightly translucent, small, and round in shape.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-28T13:23:12-05:00", "date_modified": "2020-09-17T14:09:51-04:00" }, { "phage_name": "Khallas", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Khallas\" is an arabic word. Translates\r\na task being done", "finder_name": "Iman Haider", "found_city": "North Aurora", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "25.278 N", "found_GPS_long": "13.73 W", "found_year": 2023, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The soil was collected on the\r\nfront patio of a home. The soil was dry because It has\r\nnot rained in a while and there were a lot\r\nwood chips on the first layer or the\r\nsoil. There were a\r\nroots as there were flowers and mint planted here. sample was dark brown colored.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1.2 mm in diameter, lytic, clear edge and center", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "atrocyaneus", "strain_name": "NRRL B-2883", "strain_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khallas_Plaque.pdf", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Khallas_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-28T09:27:57-05:00", "date_modified": "2025-07-11T12:34:15-04:00" }, { "phage_name": "Khalua", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Marco Gonzalez-Sosa, Tate Foster", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.733944 N", "found_GPS_long": "117.170639 W", "found_year": 2023, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": -5, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-05-01T11:27:56-04:00", "date_modified": "2023-05-01T11:27:56-04:00" }, { "phage_name": "Khamil", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Khamil because is the name all my closest friends call me and because its spelled uniquely", "finder_name": "Shantale Seals", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.979631 N", "found_GPS_long": "84.003894 W", "found_year": 2013, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "Dirt was located at the college of Georgia Gwinnett. That day was sunny and blue sky. The dirt was dry not m moist at all, with the color of a black tint", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "I was looking for the size phage of 2mm-3mm, slightly hazy (lysogenic)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Khamil_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Khamil_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-11-25T14:14:05-05:00", "date_modified": "2020-09-17T14:05:23-04:00" }, { "phage_name": "Khan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "After the villain from The Wrath of Khan", "finder_name": "Hayley Bounds and Eddie Williams", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.814 N", "found_GPS_long": "21.405 E", "found_year": 2013, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "Soil collected by Eddie Williams on 9/6/13 at a depth of 2.5 cm near a tree by the sidewalk of a park. Ensuing enrichment and all other procedures done by Hayley Bounds. Enriched on 9/11/13", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Variable sized (consistently so), somewhat cloudy plaques. On the fully lysed plates, there were consistently some visible impressions of discrete plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khan_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Khan_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Khan_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Khan_Plaque_Thumb_xvkzXg7.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Khan_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-11T15:14:12-05:00", "date_modified": "2020-09-17T14:05:27-04:00" }, { "phage_name": "Khan1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is named Khan1, named after my last name and the number date of my birthdate. Khan's direct translation of a governing title given to kings to signify that my phage was the king and best one of this section.", "finder_name": "Anaum Khan", "found_city": "Detroit", "found_state": "MI", "found_country": "United States", "found_GPS_lat": "42.41 N", "found_GPS_long": "83.14 W", "found_year": 2024, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": true, "discovery_notes": "It was found at the trees near the Quad and Shiple dorms. The sample type was soil, rocks, and wood chips. The location was a shady spot, with hard and drier ground.", "isolation_temperature": 17, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "It was discovered to be a siphoviridae, a phage with a long tail.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-12-27", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 6962, "finishing_reactions": 0, "genome_length": 68556, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 101, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khan1_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Khan1_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Khan1_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Khan1.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-04T15:12:48-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Khanosaur", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named Khanosaur after a combination of my cat, Khan, and dinosaur.", "finder_name": "Brianna Charpie", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442568 N", "found_GPS_long": "79.958647 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Khanosaur was found to the side of University of Pittsburgh Public Health School, by a tree after dusk. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques formed were small and haloed.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khanosaur_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Khanosaur_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Khanosaur_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Khanosaur_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Khanosaur_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-09-25T13:52:18-04:00", "date_modified": "2020-09-17T14:08:37-04:00" }, { "phage_name": "Khanvict", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Just a play on words of my last name, Khan.", "finder_name": "Viviana Bonciu", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "34.20068 N", "found_GPS_long": "84.00653 W", "found_year": 2012, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "Found behind house in Lawrenceville, GA. It was a wooden area, under playground. Found in 79 degrees Fahrenheit. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-12-03T10:07:11-05:00", "date_modified": "2017-09-12T10:27:23-04:00" }, { "phage_name": "Kharcho", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I thought it looked a little like soup so I just named it after a soup I have pretty often.", "finder_name": "Erika Znamenski", "found_city": "Gatineau", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.461461 N", "found_GPS_long": "75.746062 W", "found_year": 2020, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 20, "growth_notes": "", "pcluster": { "cluster": "FM", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Formed clear plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 387, "finishing_reactions": 0, "genome_length": 63572, "gcpercent": "65.2", "end_type": "TREP", "repeat_length": 952, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 105, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kharcho_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kharcho_Minimal_Final_TA2I8Kp.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kharcho_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kharcho_CoverSheet.docx", "submitted_annotation_date": "2023-04-25T14:07:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kharcho.gbf", "qced_genbank_file_date": "2023-04-25T14:07:40-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OQ938578", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kharcho_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Kharcho_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kharcho_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kharcho.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kharcho_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kharcho_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-11-23T10:03:19-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Khatoon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zenab Khan and Shannon Ely", "found_city": "Boonton", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.913 N", "found_GPS_long": "74.406 W", "found_year": 2011, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "Soil moist and warm, temp about 75 degrees Farenheit, environment warm and moist garden soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "plaque head relatively normal, long tails with a small bud at the end.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Khatoon_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Khatoon_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Khatoon_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-12-20T09:30:45-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Khenmusa", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Kensane Mthembu", "found_city": "Durban ", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.817589 S", "found_GPS_long": "30.945157 E", "found_year": 2017, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/final.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Webp.net-resizeimage.jpg", "dnam_file": null, "date_added": "2017-07-11T16:05:01-04:00", "date_modified": "2017-07-14T03:38:53-04:00" }, { "phage_name": "Kheparia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name comes from Kheparia, the deity and personification of reality and all tangible, living things from a webcomic called Vast Error https://deconreconstruction.com", "finder_name": "Josiah Asare-Bediako", "found_city": "Richmond", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.54552 N", "found_GPS_long": "77.45487 W", "found_year": 2024, "p_institution": { "institution_code": "VACU", "institution_name": "Virginia Commonwealth University", "institution_logo": "https://phagesdb.org/media/institutions/VCU.jpg", "institution_url": "http://www.vcu.edu/", "institution_city": "Richmond", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.549255", "institution_longitude": "-77.45341" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kheparia_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kheparia_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-19T13:32:20-05:00", "date_modified": "2025-04-04T11:37:29-04:00" }, { "phage_name": "Kherby", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after my dog Kherby whose name contains the first letter of each of my family members' names.", "finder_name": "Isabella Riepma", "found_city": "Helotes", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "29.398722 N", "found_GPS_long": "98.53649 W", "found_year": 2023, "p_institution": { "institution_code": "UTSA", "institution_name": "University of Texas at San Antonio", "institution_logo": "https://phagesdb.org/media/institutions/utsa.png", "institution_url": "https://www.utsa.edu/", "institution_city": "San Antonio", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-28T07:59:54-05:00", "date_modified": "2024-02-25T15:28:16-05:00" }, { "phage_name": "Kherson", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the recently liberated major city in Ukraine.", "finder_name": "Julian Wholley", "found_city": "Storrs", "found_state": "CT", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "UCON", "institution_name": "University of Connecticut", "institution_logo": "https://phagesdb.org/media/institutions/UCON.png", "institution_url": "https://uconn.edu/", "institution_city": "Storrs", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small plaque, Rough-edge", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kherson_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Kherson_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-28T14:49:34-05:00", "date_modified": "2024-02-25T15:28:05-05:00" }, { "phage_name": "Kheth", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I made use of a Facebook group with my closest friends in it.\r\n\r\nThe proposed name I have come up with has been formulated like this:\r\n\r\nTaking the first letters of the names of everyone in the group, and noting the corresponding place in the English alphabet:\r\n\r\nA = 1\r\nA = 1\r\nB = 2\r\nE = 5\r\nE = 5\r\nI = 9\r\nM = 13\r\nS = 19\r\nT = 20\r\n\r\nLet us take the average of all these numbers: 8.3 repeating. We'll say its 8. \r\nSo, looking at the Phoenician alphabet, the 8th letter is 'het' (http://en.wikipedia.org/wiki/Heth). ", "finder_name": "Avery Woods", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.747749 N", "found_GPS_long": "84.414766 W", "found_year": 2012, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": null, "discovery_notes": "Found on a dead/dying flower from a flower patch.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-03-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": 945, "finishing_reactions": 9, "genome_length": 67406, "gcpercent": "68.9", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kheth_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kheth_Minimal_Final_KJ1Ufx5.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kheth_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kheth_CoverSheet.docx", "submitted_annotation_date": "2018-02-23T23:46:22-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kheth.gbf", "qced_genbank_file_date": "2018-02-23T23:46:22-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MH001452", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/302619_4837338415214_521427580_n.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kheth_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kheth.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kheth_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Kheth.dnam5", "date_added": "2012-10-15T14:19:27-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Khiahberry", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Marshall Leathers (donated by Inaayah Abdullah)", "found_city": "Durham", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.959927 N", "found_GPS_long": "78.88157 W", "found_year": 2019, "p_institution": { "institution_code": "DTCC", "institution_name": "Durham Technical Community College", "institution_logo": "https://phagesdb.org/media/institutions/DurhamTechLogo.png", "institution_url": "http://www.durhamtech.edu/", "institution_city": "Durham", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.975438", "institution_longitude": "-78.88074" }, "enriched_sample": null, "discovery_notes": "Adopted by Marshall Leathers", "isolation_temperature": 35, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque were small, and round with no halo detected.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "NRRL B-16283", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "This strain seems to be distinct from the ATCC 25594 strain, though they are cross-listed." }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khiahberry_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Khiahberry_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Khiahberry_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Khiahberry_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-12-06T10:03:02-05:00", "date_modified": "2020-09-17T14:11:33-04:00" }, { "phage_name": "Khnum", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Victoria Gilchrist", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Found in a compost tile taken from Strathmere Farm", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khnum_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Khnum_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-08-21T14:00:57-04:00", "date_modified": "2025-07-30T16:40:56-04:00" }, { "phage_name": "Khoala", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Patrick K Huynh", "found_city": "Santa Cruz", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "36.998944 N", "found_GPS_long": "122.052626 W", "found_year": 2011, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "The collected soil was from the compost piles at the Merrill Compost Garden. Sample was taken from second compost pile away from garden along fence. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Purification 1: clear plaques between 1mm and 3.0mm in diameter\n\nPurification 2: clear plaques between 2mm and 2.5mm in diameter.\n\nPurification 3: clear plaques between 2mm and 2.5mm in diameter.\n\nPurification 4: clear plaques between 1mm and 4mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khoala_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Khoala_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Khoala_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Khoala_EMPic_Thumb.png", "dnam_file": null, "date_added": "2011-11-22T05:01:18-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Khoblack", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our dogs; Krypto, Blacky and Hope. \r\nK-ho-black", "finder_name": "Alondra Laureano and Carlos Tirado", "found_city": "Cayey", "found_state": "PR", "found_country": "USA", "found_GPS_lat": "18.1066 N", "found_GPS_long": "66.1126 W", "found_year": 2019, "p_institution": { "institution_code": "UTRB", "institution_name": "Universidad Ana G. Mendez, Gurabo campus", "institution_logo": "https://phagesdb.org/media/institutions/uturabo.jpg", "institution_url": "", "institution_city": "Gurabo", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Forest with a wet environment. An area were there is animals such as horses.", "isolation_temperature": 74, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small (0.5mm), partially turbid, no halos present and semi-defined borders.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-13T22:56:17-05:00", "date_modified": "2020-09-17T14:11:01-04:00" }, { "phage_name": "Khomodores", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after my surname that was misspelled at Home Affairs.\r\nThey had left out the 'H' in Khomo and put Komo instead.\r\nThen my father decided to register his transport business Khomodores\r\n", "finder_name": "Nosipho komo", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.816448 S", "found_GPS_long": "30.946583 E", "found_year": 2016, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This phage was found at westville campus at UKZN under a tree besides a pond at J block. The soil was moist and redish in colour", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are clear and round. the shape is nicely defined and they have halos ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khomodores_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Khomodores_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Khomodores_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Khomodores_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-07-12T09:16:02-04:00", "date_modified": "2020-07-24T16:21:16-04:00" }, { "phage_name": "Khonsu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it after the Egyptian God of the Moon because the plaques would repeat looking different for different incubation periods, which I often thought about during the evening. I also extremely enjoy mythology, and thought it would be an appropriate name for a circle that resembled the moon.", "finder_name": "Daniel Hwang", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States of America", "found_GPS_lat": "40.44576 N", "found_GPS_long": "79.95655 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil was very dry, and extremely exposed to sunlight. Collection site was located on the side of a hill, with plants growing around the area.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque appears circular and turbid with rough edges along the sides of it. It is also somewhere between small and medium sized, with a faint halo visible around the plaque.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khonsu_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Khonsu_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-13T11:15:17-04:00", "date_modified": "2020-09-17T14:11:59-04:00" }, { "phage_name": "Khorshid", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The plaque has a shape like the Sun which is called “Khorshid” in Persian.", "finder_name": "Arvin Zaker", "found_city": "Ottawa, Ontario", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.399335 N", "found_GPS_long": "75.705799 W", "found_year": 2021, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The sample was taken from compost soil from the garden surrounding the Natural Resources Canada building in Ottawa, Ontario.\r\nVery hard to amplify. Could not achieve a high concentration to obtain restriction digest data.", "isolation_temperature": 19, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque has a clear center with a turbid border (bullseye morphology). The phages therefore can undergo both lytic and lysogenic lifecycles.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khorshid_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Khorshid_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Khorshid_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-10-18T10:04:21-04:00", "date_modified": "2025-07-30T16:42:40-04:00" }, { "phage_name": "Khoshekh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It’s the name of the floating cat in Nightvale Podcast", "finder_name": "Clement Asante and Natalie Murrow", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "39.998041 N", "found_GPS_long": "105.260909 W", "found_year": 2013, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Grass surrounded pool inside an apartment complex\r\nAugust 27, 2013\r\n8:01pm\r\n27.2C", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Mostly clear and lytic with fuzzy cloudy edges. 2mm in diameter\r\nIncubated for 48 hours at 37°C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Khoshekh_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Khoshekh_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Khoshekh_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Khoshekh_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Khoshekh_EMPic_thumbs.jpg", "dnam_file": null, "date_added": "2013-11-26T12:11:54-05:00", "date_modified": "2020-09-17T14:05:23-04:00" }, { "phage_name": "Khosi", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Nontobeko Mvubu", "found_city": "", "found_state": "", "found_country": "", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Muddy soil with grass growing", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-07-29T07:45:14-04:00", "date_modified": "2017-09-24T10:40:17-04:00" }, { "phage_name": "Khuang", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is named after my dad who helped me dig up the soil and my grandmother who both have khuang in their names. Khuang also means \"light\" in Chinese.", "finder_name": "Brilia Foo", "found_city": "Hollis", "found_state": "NH", "found_country": "United States", "found_GPS_lat": "42.717814 N", "found_GPS_long": "71.554823 W", "found_year": 2023, "p_institution": { "institution_code": "UNHM", "institution_name": "University of New Hampshire at Manchester", "institution_logo": "https://phagesdb.org/media/institutions/unh_manchester.png", "institution_url": "", "institution_city": "Manchester", "institution_state": "NH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "I found it in my backyard by a small pond under some grass. \r\n\r\nSoil Characteristics: dry, full of organic matter, fine with some rocks, roots, parts of leaves, and dead grass", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "FS", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "Khuang is a round, circular plaque. It has clear edges with a hazy middle kind of making it look like a donut. Its size can range from 1 mm to 3 mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1931, "finishing_reactions": 0, "genome_length": 40042, "gcpercent": "63.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "CTCCCGCCTGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 71, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Khuang.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-21T14:28:57-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KHumphrey", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after our high school art teacher, had a great impact on me and my lab partner.", "finder_name": "Anthony Chamblee & Cece SInar", "found_city": "Owings Mills", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.427 N", "found_GPS_long": "76.774 W", "found_year": 2023, "p_institution": { "institution_code": "STEV", "institution_name": "Stevenson University", "institution_logo": "https://phagesdb.org/media/institutions/Stevenson_University_logo.png", "institution_url": "https://www.stevenson.edu/", "institution_city": "Owings Mills", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "- Found behind our dorm building (Wakefield Hall)\r\n- Sandy like soil\r\n- 2-3 inches deep into soil", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AS", "temperate": true }, "psubcluster": { "subcluster": "AS3" }, "morphotype": "", "plaque_notes": "Small, clear and close proximity", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2347, "finishing_reactions": 0, "genome_length": 38343, "gcpercent": "66.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "GAGTTGCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 70, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KHumphrey_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KHumphrey_Minimal_Final_JFuD5wc.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KHumphrey_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KHumphrey_CoverSheet.docx", "submitted_annotation_date": "2024-08-29T12:48:18-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KHumphrey_flat.txt", "qced_genbank_file_date": "2024-08-29T12:48:18-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ362674", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KHumphrey_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/KHumphrey_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KHumphrey.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-13T07:26:25-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KHunt17", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katelyn Hunt", "found_city": "Oxford", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.499869 N", "found_GPS_long": "84.89975 W", "found_year": 2011, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were occasionally faint/very opaque.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-22T06:11:53-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kiamichi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "User's middle name", "finder_name": "Nicole Casey and Ben Wilson", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.996208 N", "found_GPS_long": "83.011526 W", "found_year": 2015, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": true, "discovery_notes": "Date collected: 1/24/15\r\nLatitude: 39.996208 N\r\nLongitude: 83.011526 W\r\nDepth: 15cm\r\nTemperature: 36 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"http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KibblesNbitZ_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KibblesNbitZ_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-03-27T10:18:07-04:00", "date_modified": "2020-09-17T14:06:06-04:00" }, { "phage_name": "KibbyNibby", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our initials are KB and NB, so we decided to combine them and make KibbyNibby", "finder_name": "Kaitlynn Bjork and Noah Burby", "found_city": "Orono", "found_state": "ME", "found_country": "United States", "found_GPS_lat": "44.8978 N", "found_GPS_long": "68.6719 W", "found_year": 2019, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "KibbyNibby formed clear, virulent plaques approximately 1 to 3 mm in length.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KibbyNibby_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/KibbyNibby_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KibbyNibby_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KibbyNibby_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KibbyNibby_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-10-25T01:56:39-04:00", "date_modified": "2020-09-17T14:11:41-04:00" }, { "phage_name": "Kibe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zein Al-Atrache", "found_city": "Fredericksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.3063 N", "found_GPS_long": "77.4444 W", "found_year": 2008, "p_institution": { "institution_code": "UMAW", "institution_name": "University of Mary Washington", "institution_logo": "https://phagesdb.org/media/institutions/MaryWashington.png", "institution_url": "http://www.umw.edu/", "institution_city": "Fredericksburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.301709", "institution_longitude": "-77.47360" }, "enriched_sample": true, "discovery_notes": "From soil, depth 5 cm, behind Mason Hall, below ampitheatre. Wet soil, below large trees, next to small stream, and in the path of construction run-off. 80°F", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Size: 1-2 mm plaque diameter (large); Appearance: Turbid – not haloed; Incubation Time and Temp: 37 C for 24 hours ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/kibe_plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/kibe_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/kibe_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kibe_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/kibe_EM_thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kickbusch", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's our last name.", "finder_name": "Dolores Kickbusch and Delilah Kickbusch", "found_city": "Las Vegas", "found_state": "NV", "found_country": "United States", "found_GPS_lat": "36.113611 N", "found_GPS_long": "115.144444 W", "found_year": 2019, "p_institution": { "institution_code": "UNLV", "institution_name": "University of Nevada Las Vegas", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofNevadaLasVegas.jpg", "institution_url": "https://www.unlv.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "36.108190", "institution_longitude": "-115.1431" }, "enriched_sample": true, "discovery_notes": "The phage was isolated from a plant box filled with wet and grainy soil. The phage was isolated on a clear sunny day.", "isolation_temperature": 36, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The average size of the plaques is about 7mm. The plaques are cloudy with faded edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-11T18:11:30-05:00", "date_modified": "2020-09-17T14:10:59-04:00" }, { "phage_name": "Kickedflash06", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "It's based on my gamertag", "finder_name": "Adam Disla", "found_city": "Storrs", "found_state": "CT", "found_country": "US", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "UCON", "institution_name": "University of Connecticut", "institution_logo": "https://phagesdb.org/media/institutions/UCON.png", "institution_url": "https://uconn.edu/", "institution_city": "Storrs", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The phage was isolated in East Campus UConn Storrs", "isolation_temperature": 68, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "In the photo I have it looks like there all connected to each other", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-22T11:01:39-04:00", "date_modified": "2025-04-04T11:37:27-04:00" }, { "phage_name": "Kickflip", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Xola Solano, Makaiya Blea", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.743824 N", "found_GPS_long": "117.152325 W", "found_year": 2023, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Phage obtained from soil sample under a bush near a common walking path for people and their dogs.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-25T15:27:25-04:00", "date_modified": "2023-04-25T15:27:25-04:00" }, { "phage_name": "Kicks", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Kicks is derived from my last name Kickel. Kicks has been my nickname for about 5 years, and was given to me by my basketball coach one day at practice.", "finder_name": "Alison Kickel", "found_city": "Hudson", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.984533 N", "found_GPS_long": "92.7545 W", "found_year": 2021, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "The soil was collected near a compost pile, with semi-moist, practically degraded leaves and grass. There were no live plants nearby, and no other animals besides squirrels chipmunks, spiders, earthworms, and various insects. Soil was adopted from Maddie who adopted it from Professor Klyczek.", "isolation_temperature": 29, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are approximately 1mm, with halos. Plaques are clear and uniform in size, some are a bit smaller than others, but for the most part are all the same size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kicks_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kicks_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-11T13:16:14-04:00", "date_modified": "2022-03-16T11:02:18-04:00" }, { "phage_name": "KidCudi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Kid Cudi (the stage name of an artist), who saves lives.", "finder_name": "Jon Kim", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.824115 N", "found_GPS_long": "71.403468 W", "found_year": 2018, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "Discovered by the tree next to the bench and table in the Everett-Archibald quad, within the Keeney Quadrangle", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KidCudi_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KidCudi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-17T14:51:36-05:00", "date_modified": "2020-08-27T15:30:43-04:00" }, { "phage_name": "Kiddie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The tomato garden is located at the Y Preschool on UMBC's campus, so we named it the diminutive term for kids.", "finder_name": "Sydnie Taylor & Puneet Gill", "found_city": "Baltimore", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.258125 N", "found_GPS_long": "76.707964 E", "found_year": 2019, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Found in a tomato garden\r\nThe temperature was about 89 F upon environmental sample collection", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque is about 1 cm in diameter total with about 0.3 cm being a halo. It appears with circular margins and is fairly turbid-- the halo is more turbid than the center", "lysogeny_notes": "This phage was tested and appears to be temperate", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiddie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kiddie_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kiddie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kiddie_EMP.png", "dnam_file": null, "date_added": "2019-10-08T13:39:21-04:00", "date_modified": "2020-09-17T14:11:11-04:00" }, { "phage_name": "Kiddo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emma Wylie", "found_city": "Perrysburg", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "41.538972 N", "found_GPS_long": "83.62474 W", "found_year": 2018, "p_institution": { "institution_code": "BGSU", "institution_name": "Bowling Green State University", "institution_logo": "https://phagesdb.org/media/institutions/BowlingGreenStateUniversity.jpg", "institution_url": "https://www.bgsu.edu/", "institution_city": "Bowling Green", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "41.379062", "institution_longitude": "-83.63134" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "temperate", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-23T20:24:16-04:00", "date_modified": "2020-09-17T14:10:01-04:00" }, { "phage_name": "Kidikus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Shortened version of the name Kidikusfagidugagen", "finder_name": "Morgan Baricaua & Hunter Klein", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.666324 N", "found_GPS_long": "117.401195 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Behind Foley Library on Gonzaga University's campus. Soil was shaded beneath a large tree.", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Titer = 2.3x10^7 pfu/mL", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kidikus_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kidikus_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kidikus_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kidikus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kidikus_EMPic_Thumb.png", "dnam_file": null, "date_added": "2019-11-13T00:25:15-05:00", "date_modified": "2020-09-17T14:11:51-04:00" }, { "phage_name": "KidKen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My partner and I named KidKen after a mutual friend of ours.", "finder_name": "Austin McLean", "found_city": "Greensburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "STHL", "institution_name": "Seton Hill University", "institution_logo": "https://phagesdb.org/media/institutions/setonhill.jpg", "institution_url": "http://www.setonhill.edu/", "institution_city": "Greensburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.310649", "institution_longitude": "-79.55630" }, "enriched_sample": null, "discovery_notes": "KidKen was adopted from another group in our class because our environmental sample did not contain any bacteriophages. \r\n\r\nLatitude: 40.30771149108601\r\nLongitude: -79.55770687876793", "isolation_temperature": 18, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque for KidKen was cloudy and turbid so it was most likely in the temperate stage.", "lysogeny_notes": "KidKen could either go through the lytic cycle or the lysogenic cycle because it is in the temperate stage.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-08T23:41:25-05:00", "date_modified": "2020-09-17T14:07:11-04:00" }, { "phage_name": "KidNamedFinger", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We love Michael Ermantraut", "finder_name": "Hugel Science Center", "found_city": "Easton", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.698889 N", "found_GPS_long": "75.211111 W", "found_year": 2023, "p_institution": { "institution_code": "LAFA", "institution_name": "Lafayette College", "institution_logo": "https://phagesdb.org/media/institutions/Lafayette.png", "institution_url": "http://www.lafayette.edu/", "institution_city": "Easton", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "40.698482", "institution_longitude": "-75.20955" }, "enriched_sample": true, "discovery_notes": "Found at 8 cm depth in a mulch bed under a tree. Located in a small field right next to the Hugel Science Center.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, uniform circles. There is a clear and defined edge. The plaques mostly span 3 mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KidNamedFinger_Plaque.PNG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/KidNamedFinger_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-26T09:50:54-04:00", "date_modified": "2023-05-02T07:19:09-04:00" }, { "phage_name": "KidneyBean", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Love, Sbarounis, Pindras, Faust", "found_city": "Kenosha", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "42.594267 N", "found_GPS_long": "87.851474 W", "found_year": 2017, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", 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67802, "gcpercent": "65.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGCCGCGTAC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KidneyBean_CompleteNotes_XnVmU2O.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KidneyBean_Minimal_Final_baf6Ghe.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KidneyBean_Authors_eIZeM8h.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KidneyBean_CoverSheet_RADR5HH.pdf", "submitted_annotation_date": "2018-07-30T12:07:38-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KidneyBean_flat.txt", "qced_genbank_file_date": 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"Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kierlyn_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kierlyn_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Kierlyn_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kierlyn_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kierlyn_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-12-03T14:47:25-05:00", "date_modified": "2020-09-17T14:11:09-04:00" }, { "phage_name": "Kiersten", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after my little sister Kiersten, because they share many defining attributes. Much like my little sister, the phage never cooperated with me, never showed up when I wanted it to, and caused me great amounts of stress. But, despite these qualities they still bring me joy.. sometimes. ", "finder_name": "Gabriel Andino", "found_city": "Waco", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "31.551474 N", "found_GPS_long": "97.120523 W", "found_year": 2018, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "Phage was located off Baylor campus from a large Burr Oak in a dry field. ", "isolation_temperature": 26, "growth_notes": "", "pcluster": { "cluster": "AL", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were clear and very small, with no rough edges around the sides. The average radius of the plaques was approximately 0.05 centimeters. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiersten_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kiersten_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kiersten_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-03T20:46:17-05:00", "date_modified": "2020-09-17T14:09:37-04:00" }, { "phage_name": "Kifpy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "In the computer game Spore, there is a section where you control a single celled organism. Kifpy was one of the most common names I used for these cells.", "finder_name": "Kendra Cameau", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.9468 N", "found_GPS_long": "75.2071 W", "found_year": 2018, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "clear, round, ~1 to 3 micrometers in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kifpy_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kifpy_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kifpy_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kifpy_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-14T13:31:37-05:00", "date_modified": "2020-09-17T14:10:11-04:00" }, { "phage_name": "Kihatsu", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "I derived this name from the Japanese words 'Kisei' which means parasitism and 'Bakuhatsu' which means to burst or explode. The derivative combines \"ki\" and \"hatsu\" from the words respectively in translation to mean \"A parasite that bursts.\"", "finder_name": "Reagan Rouland", "found_city": "Clayton", "found_state": "NC", "found_country": "North America", "found_GPS_lat": "35.689791 N", "found_GPS_long": "78.424139 W", "found_year": 2024, "p_institution": { "institution_code": "NCSU", "institution_name": "North Carolina State University", "institution_logo": "https://phagesdb.org/media/institutions/ncstate-logo.png", "institution_url": "http://www.ncsu.edu/", "institution_city": "Raleigh", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "35.784920", "institution_longitude": "-78.68212" }, "enriched_sample": true, "discovery_notes": "Utilized the first couple inches of topsoil from a garden bed used to grow vegetables towards the end of the night. Temperatures were cool, around 37°C, and a humidity factor of 72%.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "FF", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small, cloudy plaques that span a size of roughly 1mm. The phage itself is Siphoviridae with a tail length of ~237.5mm and a head length of ~62.5nm for a total length of ~300nm.", "lysogeny_notes": "Based on the plagues caused by this phage, it appears to be lytic rather than temperate.", "seq_finished": true, "date_finished": "2024-12-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1823, "finishing_reactions": 0, "genome_length": 43237, "gcpercent": "64.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "TCCGCCGCGTGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 67, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kihatsu_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kihatsu_Minimal_Final_4gVOju9.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kihatsu_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kihatsu_CoverSheet.pdf", "submitted_annotation_date": "2025-06-27T08:07:48-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kihatsu_flat.txt", "qced_genbank_file_date": "2025-06-27T08:07:48-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV876942", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kihatsu_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kihatsu_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kihatsu.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-08T08:03:33-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kika", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kika is a close friend's nickname.", "finder_name": "Pauline Nunez-Moreno", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.212002 N", "found_GPS_long": "97.148459 W", "found_year": 2021, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "The temperature at time of collection was 25 degrees Celsius. The soil was brittle and dry when gathered.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were circular and clear, ranging from 2-3mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kika_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kika_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-18T09:51:19-04:00", "date_modified": "2022-03-16T11:02:35-04:00" }, { "phage_name": "Kiki", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Akira Isaac", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.92129 N", "found_GPS_long": "77.01778 W", "found_year": 2013, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-01-16T10:33:20-05:00", "date_modified": "2015-04-29T14:32:36-04:00" }, { "phage_name": "Kiki509", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kinia Rene", "found_city": "Nyack", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "Shadai", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiki509_Plaque_b6AVcJm.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kiki509_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kiki509_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-09-23T20:23:06-04:00", "date_modified": "2020-09-17T14:10:21-04:00" }, { "phage_name": "Kikiko", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Phage name is inspired by a nickname given to me by one of my childhood friends followed by the letters \"ko\" as a way for stylistic purposes.", "finder_name": "Abdul Karim Halal", "found_city": "Nepean", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.4161 N", "found_GPS_long": "75.6702 W", "found_year": 2022, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil sample was collected from the Rideau River walkway underneath Lees station. Soil is collected 5cm below the surface and at an ambient temperature of 14 degrees Celsius.", "isolation_temperature": 14, "growth_notes": "", "pcluster": { "cluster": "EM", "temperate": null }, "psubcluster": { "subcluster": "EM2" }, "morphotype": "PODO", "plaque_notes": "Observed plaques are small in diameter and clear in appearance.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-01-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 45, "finishing_reactions": 0, "genome_length": 53980, "gcpercent": "59.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 48, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kikiko_Plaque_NPxoT3t.jpg", "em_file": "https://phagesdb.org/media/emPics/Kikiko_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kikiko_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kikiko.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kikiko_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-10-17T08:47:51-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KikiLyd", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The childhood nicknames of Lydia Chambers (Lyd) and Kristin Peterson (Kiki) were combined to name the phage.", "finder_name": "Lydia Chambers and Kristin Peterson", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667176 N", "found_GPS_long": "117.401152 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Phage Kikilyd contains 66 plaques in the 10^-5 dilution ranging from <1mm to 6mm in diameter with relatively clear edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KikiLyd_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KikiLyd_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/KikiLyd_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KikiLyd_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KikiLyd_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-04-08T10:45:51-04:00", "date_modified": "2020-09-17T14:11:51-04:00" }, { "phage_name": "Kikipoo", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Courtney Dohl", "found_city": "Elmhurst", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "41.892694 N", "found_GPS_long": "87.952895 W", "found_year": 2007, "p_institution": { "institution_code": "YORK", "institution_name": "York Community High School", "institution_logo": "https://phagesdb.org/media/institutions/YorkCommunityHighSchool.gif", "institution_url": "http://york.elmhurst205.org/", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2011-09-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 40, "finishing_reactions": null, "genome_length": 68839, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 104, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "JN699017", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kikipoo_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kikipoo_EMPic.tif", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Kikipoo_Restriction_Map.jpg", "fasta_file": "https://phagesdb.org/media/fastas/Kikipoo.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kikipoo_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kikipoo_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/kikipoo.dnam5", "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kikiro", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Gulinur Uralova", "found_city": "Philadelphia", "found_state": "PA", "found_country": "Philadelphia", "found_GPS_lat": "39.948955 N", "found_GPS_long": "75.172538 W", "found_year": 2024, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": null, "discovery_notes": "The sample was taken the next day after a rain. It was wet and cold.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kikiro_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kikiro_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/final-image-2.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/final-image.jpg", "dnam_file": null, "date_added": "2024-10-03T10:38:40-04:00", "date_modified": "2025-04-04T11:37:41-04:00" }, { "phage_name": "Kikis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named the phage Kikis after my cat who has the same name.", "finder_name": "Sabrina Childress", "found_city": "CORPUS CHRISTI", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "27.656389 N", "found_GPS_long": "97.380833 W", "found_year": 2020, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "Soil sample was taken from a backyard walkway where the grass was worn away. The sample was slightly grassy and was taken two inches below the soil. The soil was dark in color, slightly moist and had some clay with no odor. It was collected in 84 degrees Fahrenheit, 68% humidity and 30.03 inHg of pressure. The sample was collected 06/17/2020 at the time of 11:00 am. It was collected from a walkway adjacent to a planter which contains various bottle brush plants and cattails. This walkway is home to frogs, squirrels, cottontails among other similar animals.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "The plaque morphology is lytic and clear with symmetrical features.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kikis_Plaque_Z4KtAre.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kikis_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-07-09T08:19:54-04:00", "date_modified": "2020-08-14T15:24:03-04:00" }, { "phage_name": "Kiko", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kiko was the name of my pet bird. ", "finder_name": "Mira Patel", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44555 N", "found_GPS_long": "79.9561 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Kiko was collected from soil on 1/9/17. On that day, the temperature was -3.9oC, and it was windy with a little snowfall. The soil was transported for approximately 10 minutes before it was brought to the laboratory. The soil was covered with snow and mulch on the top. The bottom layer of soil which was collected was softer. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DB", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are mostly small and round, 1 mm in diameter. Some of the plaques do seem to have a tear-drop extension on it. The plaques are clustered together near one end of the plate.\r\nThere was a little size discrepancy of the plaques on my original plaque purifications. \r\nThe slight difference between the plaques is because Kiko is affected by direction. Since the bench is not exactly leveled, it would be microscopically deeper at one point; this difference means a lot to a phage because at the microscopic level a phage is much more affected. The difference in level effects the top agar and host cells when they are cooling on the plate. One end of the lawn would be slightly deeper than the other. There are smaller plaques where the agar is deeper because the phage did not diffuse as much. ", "lysogeny_notes": "Plaques formed by Kiko all are clear meaning that it is most likely a lytic phage using only the lytic cycle to reproduce. However, I must conduct lysogen testing to prove this assumption. ", "seq_finished": true, "date_finished": "2017-05-22", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2706, "finishing_reactions": 0, "genome_length": 44268, "gcpercent": "66.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCCTCGGTCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 67, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kiko_Minimal_Final_LavlDxr.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-12-07T14:34:54-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kiko_flat.txt", "qced_genbank_file_date": "2018-12-07T14:34:54-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK284521", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiko_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kiko_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kiko_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kiko.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kiko_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kiko_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-02-01T14:22:36-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kilgore", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Gregory Hadley and Trovante Thompson", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-05-06T14:57:25-04:00", "date_modified": "2020-09-17T14:05:50-04:00" }, { "phage_name": "Kilhochax", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's all four of my pet names combinded\r\nCharlie, kilo, Max, and Echo", "finder_name": "Glennis Enid Velasquez-Mejia", "found_city": "Fairfax", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.8275 N", "found_GPS_long": "77.306667 W", "found_year": 2024, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 68, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-09T10:08:21-05:00", "date_modified": "2025-04-04T11:37:42-04:00" }, { "phage_name": "Kiligie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kilig. As a noun, it is defined as \"shudder\" or a \"thrill\", while as an adjective it is defined as \"exhilarated by an exciting or romantic experience\". Kiligie is more interesting when pronouncing.", "finder_name": "Yibing Chen", "found_city": "Baltimore", "found_state": "MD", "found_country": "United State", "found_GPS_lat": "39.331237 N", "found_GPS_long": "76.619981 W", "found_year": 2022, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": false, "discovery_notes": "Dry", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Little circle", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiligie_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-02T09:21:49-05:00", "date_modified": "2022-12-02T09:21:49-05:00" }, { "phage_name": "KilKor", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from adding the first three letters from both of the founders' first names together. Kil(ey) + Kor(rin) = KilKor.", "finder_name": "Kiley Banks and Korrin Taylor", "found_city": "Longview", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.4655 N", "found_GPS_long": "94.727 W", "found_year": 2018, "p_institution": { "institution_code": "LETO", "institution_name": "LeTourneau University", "institution_logo": "https://phagesdb.org/media/institutions/LeTourneau.png", "institution_url": "http://www.letu.edu/", "institution_city": "Longview", "institution_state": "TX", "institution_country": "United States", "institution_latitude": "32.466083", "institution_longitude": "-94.72640" }, "enriched_sample": true, "discovery_notes": "Excavation of the soil took place right below a tree in a flower bed outside of Glaske Center. We had to move flowers out of the way and dig past a layer of mulch to remove soil. We dug to a depth of 2 inches before taking the sample. We filled the collection tube to 3.5 ml with soil. Soil was a light brown and slightly sandy, but had good moisture. The soil was permeated by threadlike roots and contained two dense chunks of soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "P", "temperate": true }, "psubcluster": { "subcluster": "P1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques are roughly 1-2.2mm in diameter. They are circular and clear in the center of the plaque, although they get slightly cloudy along the edge.", "lysogeny_notes": "The Lysogeny of KilKor was the lysogenic reproductive cycle.", "seq_finished": true, "date_finished": "2019-01-11", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1275, "finishing_reactions": 0, "genome_length": 48916, "gcpercent": "67.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "CCTGCCGCCCCGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 79, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KilKor_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-12-12T00:09:08-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KilKor_flat.txt", "qced_genbank_file_date": "2019-12-12T00:09:08-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN892486", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KilKor_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/KilKor_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KilKor.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KilKor_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KilKor_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-04T12:19:54-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Killa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I thought of the phage as killing the bacteria, so I named it Killa.", "finder_name": "Rebecca Glynn", "found_city": "Roslyn", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.135316 N", "found_GPS_long": "75.146356 W", "found_year": 2012, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": false, "discovery_notes": "The soil this phage was isolated from was normal topsoil. The sample was taken from a shallow depth and the soil was a little damp.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were a range of sizes and were rather turbid. The average plaque size was 3.55 mm. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Killa_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Killa_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/Killa_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Killa_Plaque_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Killa_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-11-15T15:58:28-05:00", "date_modified": "2017-09-12T10:27:22-04:00" }, { "phage_name": "KillBill", "old_names": "KillBill", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A movie", "finder_name": "Aliyah Anderson", "found_city": "Washington DC", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": false, "discovery_notes": "Found in a flower bed outside of Howard University's Administration Building. Dug 6cm deep before collection.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "turbid, \"bullseye\" plaques: clear center with cloudy edges", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPENN", "facility_name": "University of Pennsylvania DNA Sequencing Facility", "contact_person": "", "shipping_address": "", "facility_website": "http://www.med.upenn.edu/genetics/dnaseq/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-09-18T22:21:40-04:00", "date_modified": "2020-09-17T14:08:21-04:00" }, { "phage_name": "Killborn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The soil sample was collected from a public garden located on Killborn Avenue in Ottawa, Canada", "finder_name": "Naveed Shahzada", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.390706 N", "found_GPS_long": "75.637803 W", "found_year": 2021, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The soil sample was dark, fine-textured, loamy", "isolation_temperature": 19, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques displayed on the plaque assay showed to be large and clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Killborn_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Killborn_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Killborn_Digest_bkCQ0Uk.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Killborn_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-10-18T10:17:15-04:00", "date_modified": "2025-07-31T10:29:59-04:00" }, { "phage_name": "Killer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It was able to kill most of our bacteria in the first try", "finder_name": "Shayla Berg, Stephanie Kwon", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": true, "discovery_notes": "Found between flowery plants in damp soil by the English Department", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-08T23:47:18-05:00", "date_modified": "2020-09-17T14:07:57-04:00" }, { "phage_name": "KillerBean", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the protagonist from the hit movie, \"Killer Bean Forever\"", "finder_name": "GTA", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.342557 N", "found_GPS_long": "72.579601 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Collected from soil along a parking lot adjacent to farmland in Hadley Massachusetts", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Very small, clear plaques, low turbidity", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "CAMBRIDGE", "facility_name": "University of Cambridge DNA Sequencing Facility", "contact_person": "", "shipping_address": "", "facility_website": "http://www.bio.cam.ac.uk/~pflgroup/DNA_Facility/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/killerbean_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/killerbean_empic_thumb.jpg", "dnam_file": null, "date_added": "2023-10-26T11:04:23-04:00", "date_modified": "2024-10-03T12:08:16-04:00" }, { "phage_name": "KillerD", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Deborah Fadoju & Kristina Righter", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-02-12T15:32:49-05:00", "date_modified": "2017-09-12T10:27:33-04:00" }, { "phage_name": "KillerKoala", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our phage was virulent but not aggressive so KillerKoala fit.", "finder_name": "Alexander Smith", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.458443 N", "found_GPS_long": "86.941871 W", "found_year": 2016, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "The soil was collected behind my apartment building. The day before, there had been rain.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "O", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small, round, no turbidity, well defined edges", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KillerKoala_Plaque.webp", "em_file": "https://phagesdb.org/media/emPics/KillerKoala_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KillerKoala_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KillerKoala_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-01T16:19:23-04:00", "date_modified": "2020-09-17T14:07:48-04:00" }, { "phage_name": "KillerQueen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after both the song \"Killer Queen\" by the band Queen, and the stand Killer Queen from JoJo's Bizarre Adventure. The stand Killer Queen utilizes bombs to eliminate its opponents, similar to how phages lyse or \"blow up\" their virus opponents.", "finder_name": "Charlotte DeLong", "found_city": "Oxford", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "39.506568 N", "found_GPS_long": "84.727054 W", "found_year": 2024, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "This sample was found next to a pond. It was collected around 9 a.m., and the temperature was around 50 degrees Fahrenheit. The weather was dry, cool, and partly cloudy. The dirt this phage was isolated from was full of leaves and twigs, and was dry.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EG", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques for this phage are very clear and numerous.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-04-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 308, "finishing_reactions": 0, "genome_length": 62907, "gcpercent": "67.1", "end_type": "TREP", "repeat_length": 203, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 109, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KillerQueen_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-06-11T13:33:04-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KillerQueen_flat.txt", "qced_genbank_file_date": "2025-06-11T13:33:04-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV915811", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KillerQueen_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KillerQueen_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KillerQueen.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T11:45:16-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KillerSloth", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from a sloth since it was being slow to duplicate, and killer came from killing bacteria.", "finder_name": "Bernaldo Castelan", "found_city": "Austin", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "30.27 S", "found_GPS_long": "97.71 E", "found_year": 2016, "p_institution": { "institution_code": "ASTN", "institution_name": "Austin Community College Highland Campus", "institution_logo": "https://phagesdb.org/media/institutions/AustinCC.jpg", "institution_url": "https://www.austincc.edu/campuses/highland-campus/", "institution_city": "Austin", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "My phage seemed to grow a t a slow rate. They also grew faster when usage of phage buffer was less. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are very little and grow very slowly. They tend to grow faster when incubated. I had to do 5 spot titers. The first spot titer phage only grew in the first 3 serial dilutions. The second spot titer I had few plaques formed in my fifth dilution. The third spot titer phage grew up to my fourth dilution. My first three spot titers were created from 10ul of phage buffer instead of 3ul. For the remaining of the spot titers I used 3ul of phage buffer. My fourth spot titer I created few plaques were noticeable up to my sixth dilution, and was close to the threshold. My fifth spot titer gave me the same results as my fourth spot titer.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KillerSloth_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/KillerSloth_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KillerSloth_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-10T08:36:43-05:00", "date_modified": "2020-09-17T14:07:13-04:00" }, { "phage_name": "KillerTomato", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "KillerTomato was found on October 4th and we wanted the name to be Halloween themed.", "finder_name": "Reganne Brewster", "found_city": "Pocatello", "found_state": "ID", "found_country": "US", "found_GPS_lat": "42.867222 N", "found_GPS_long": "112.428889 W", "found_year": 2022, "p_institution": { "institution_code": "IDSU", "institution_name": "Idaho State University", "institution_logo": "https://phagesdb.org/media/institutions/ISU-vertical.png", "institution_url": "https://www.isu.edu/", "institution_city": "Pocatello", "institution_state": "ID", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "KillerTomato was found in enriched soil near a tomato plant.", "isolation_temperature": 20, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Distinct, round, medium sized plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-12-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 5321, "finishing_reactions": 0, "genome_length": 17442, "gcpercent": "68.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KillerTomato_CompleteNotes.pptx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KillerTomato_Minimal_Final_ObTQ1LC.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KillerTomato_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KillerTomato_CoverSheet.docx", "submitted_annotation_date": "2023-05-29T15:39:15-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KillerTomato_FlatFile.txt", "qced_genbank_file_date": "2023-05-29T15:39:15-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OR159653", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KillerTomato_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KillerTomato.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-11T08:26:18-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KillerX", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "lubna,", "found_city": "Hagerman", "found_state": "UT", "found_country": "US", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-31T21:09:08-04:00", "date_modified": "2019-10-31T21:09:08-04:00" }, { "phage_name": "KillerZgenix", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is the members of the group's names combined and it sounded cool", "finder_name": "Haynes, K. Melancon, S. Moore, S. Christian, I", "found_city": "Moore", "found_state": "OK", "found_country": "USA", "found_GPS_lat": "35.3358 N", "found_GPS_long": "97.53446 W", "found_year": 2024, "p_institution": { "institution_code": "UCOK", "institution_name": "University of Central Oklahoma", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofCentralOklahoma.JPG", "institution_url": "https://www.uco.edu/", "institution_city": "Edmond", "institution_state": "OK", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "We discovered that our phage has completely killed the bacteria that was present on our plate. The only thing remaining is our phage.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "A mix of small and medium sized plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Sydeeshakimidi_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-06T09:15:07-05:00", "date_modified": "2024-11-06T09:15:25-05:00" }, { "phage_name": "Killian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We go to Gonzaga, and there's a guy named Killian Tillie who's pretty good at basketball, and we are a big basketball school. That's why we choose that name.", "finder_name": "John and Marie", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667115 N", "found_GPS_long": "117.402875 W", "found_year": 2019, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found the soil at the base of the tree outside Hughes Hall on the Gonzaga University campus. The soil itself was very muddy and sandy, and was gray and brown", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "We had medium sized plaques with an average diameter of 2mm. At some points our plaque morphology differed, but after some time they have normalized to what they have been consistently.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Killian_Plaque_PiQdNnQ.JPG", "em_file": "https://phagesdb.org/media/emPics/Killian_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Killian_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Killian_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-04-08T10:37:58-04:00", "date_modified": "2020-09-17T14:11:51-04:00" }, { "phage_name": "KillianIt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "As students at Gonzaga University, we decided to name our phage after basketball player Killian Tillie. We also decided it was a fun play on words since the bacteriophage kills the bacteria.", "finder_name": "Grace White, Maya Gutierrez", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.6665 N", "found_GPS_long": "117.4063 W", "found_year": 2020, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The sample was collected from a dirt patch in a grassy field off the path by Jundt Art Muesum and the lake. There was snow on the ground that we had to clear. We took our sample from about 4 inches under the surface.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were large in size and oval in shape.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KillianIt_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KillianIt_EMPic_D665C2U.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Phage_JPEG.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KillianIt_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-04-23T08:29:17-04:00", "date_modified": "2021-01-28T11:04:21-05:00" }, { "phage_name": "Killigrew", "old_names": "Killigreq", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The soil sample was collected from my backyard compost pile. My dog loves to hang out and dig around in the compost pile so I named it after her.", "finder_name": "Christa Frontera", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.39 N", "found_GPS_long": "97.4108 W", "found_year": 2016, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "Collection Date: 8/29/2016\r\nTemperature: 84 degrees C\r\nHumidity: 69%\r\nWind Speed: 3mph\r\nSoil: little to no moisture; leaves and bark in soil", "isolation_temperature": 84, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "Lysogenic, large plaques. rare class of \"clear plaque\" mutants refferred to as \"virulent\".", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 506, "finishing_reactions": 0, "genome_length": 51163, "gcpercent": "63.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 87, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Killigrew_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-10-07T23:41:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Killigrew.gbf", "qced_genbank_file_date": "2019-10-07T23:41:40-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN585970", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Killigreq_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Killigreq_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Killigrew.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Killigreq_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Killigreq_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Killigrew.dnam5", "date_added": "2016-10-26T15:01:28-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KillJoy182", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Fabian Mendoza and Rene Rios", "found_city": "Houston", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "HOUS", "institution_name": "University of Houston-Downtown", "institution_logo": "https://phagesdb.org/media/institutions/logo-uhd.png", "institution_url": "http://www.uhd.edu/", "institution_city": "Houston", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "29.766280", "institution_longitude": "-95.35917" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KillJoy182_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KillJoy182_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-11T13:08:14-05:00", "date_modified": "2020-09-17T14:06:41-04:00" }, { "phage_name": "Killmonger", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maya Wilson", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.923333 N", "found_GPS_long": "77.018611 W", "found_year": 2018, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-23T19:54:24-04:00", "date_modified": "2020-09-17T14:10:06-04:00" }, { "phage_name": "Killough", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "the phage was named after a massacre that happened in the 1820s in Anika's family, called the Killough massacre.", "finder_name": "Anika Dresser and Sam Sexton", "found_city": "Lucas", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "30.07967 N", "found_GPS_long": "96.57573 W", "found_year": 2022, "p_institution": { "institution_code": "OUBU", "institution_name": "Ouachita Baptist University", "institution_logo": "https://phagesdb.org/media/institutions/ouachita-baptist-university.jpg", "institution_url": "http://www.obu.edu/", "institution_city": "Arkadelphia", "institution_state": "AR", "institution_country": "USA", "institution_latitude": "34.125830", "institution_longitude": "-93.05277" }, "enriched_sample": true, "discovery_notes": "Found approximately 2 feet behind tree. Area was partially shaded, and had recently rained.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Killough_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Killough_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Killough_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Killough_plaque_thumbnail.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Killough_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-09-30T08:54:31-04:00", "date_modified": "2024-02-25T15:27:53-05:00" }, { "phage_name": "KillPhill", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is inspired by the movie and the song Kill Bill, replacing the B with a Ph, hence why there are two l’s.", "finder_name": "Quoc Bui", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "39.95446 N", "found_GPS_long": "75.19092 W", "found_year": 2023, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The sample site was taken at an empty corner section of a plant garden bed, adjacent to many small trees and shrubs. Dirt appeared to be darker in this area than the rest. It was slightly hard to dig dirt (dense & dry) (broke my wooden spoon). Slightly shaded area (by the trees and the adjacent building). Sample collected on a slightly cool (26 degrees celcius) and windy day.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques have uneven margins, slightly turbid (i.e. low to medium turbidity), varies in size, and very faint to almost no halos. At the start of purification, the plaque seemed to have even margins, slight turbidity, variation in size, and clear halos. Phage may be temperate, TBD.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KillPhill_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KillPhill_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-17T14:13:31-05:00", "date_modified": "2024-02-25T15:28:21-05:00" }, { "phage_name": "Killua", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Killua\" is one of the characters from the anime \"Hunter x Hunter\".", "finder_name": "Natalie Doty, Ruby Raphael-Thekkudan", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.666896 N", "found_GPS_long": "117.405256 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This sample was collected by a tree near Lake Arthur. The soil was a bit frozen.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage was not classified under the groups EE, EG, or EK1, so therefore the morphology is unknown.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-26T09:12:49-04:00", "date_modified": "2024-10-08T10:20:07-04:00" }, { "phage_name": "Kilomegawatt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The original name from the individual that discovered the phage was KMW likely from the individuals initials. As the primary researcher, and to match the naming protocols while still keeping the initials for the phage, I chose the name KiloMegaWatt, allowing for an easy to say word while keeping the original initials embedded. ", "finder_name": "Kal Waterman, Spencer Hale", "found_city": "Helena", "found_state": "MT", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2007, "p_institution": { "institution_code": "MTEC", "institution_name": "Montana Technological University", "institution_logo": "https://phagesdb.org/media/institutions/mtechlogo.png", "institution_url": "http://www.mtech.edu/", "institution_city": "Butte", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "46.012558", "institution_longitude": "-112.5576" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques generally are actually halo in definition and are typically about 1/2 centimeter in diameter. It appears to be a clear defined death zone in the middle with a lighter death zone on the edges contributing to the halo like character.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kilomegawatt_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kilomegawatt_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kilomegawatt_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kilomegawatt_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-29T16:52:36-05:00", "date_modified": "2020-09-17T14:07:32-04:00" }, { "phage_name": "Kilp", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Reilly Kilpatrick", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.7847 N", "found_GPS_long": "79.94 W", "found_year": 2017, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-31T20:32:21-04:00", "date_modified": "2017-10-31T20:32:21-04:00" }, { "phage_name": "Kimba", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my cat Kimba.", "finder_name": "Zachary Wilkins", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.44534 N", "found_GPS_long": "79.95206 W", "found_year": 2025, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Soil came from under a tree next to Heinz Chapel. The soil was moist and cool, as it had recently rained, and was more clay-like in consistency and color.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A11" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-08-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 20068, "finishing_reactions": 0, "genome_length": 51728, "gcpercent": "63.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 99, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kimba.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-06-27T11:02:28-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kimball", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "All the other names were taken.", "finder_name": "Jared Ainsworth and Luca Francesco Marinoni ", "found_city": "Mustang", "found_state": "OK", "found_country": "USA", "found_GPS_lat": "35.385278 N", "found_GPS_long": "97.766389 W", "found_year": 2018, "p_institution": { "institution_code": "UCOK", "institution_name": "University of Central Oklahoma", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofCentralOklahoma.JPG", "institution_url": "https://www.uco.edu/", "institution_city": "Edmond", "institution_state": "OK", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Within 10 feet from a pond. The soil was rich in organic matter and was moist but not soaked. The soil was collected directly from the surface. Soil was dark brown color.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Medium sized, clear plaques with 3mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kimball_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kimball_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kimball_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Kimball_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-10-30T16:14:14-04:00", "date_modified": "2024-02-25T15:28:11-05:00" }, { "phage_name": "Kimballdog", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Aiden Deegan", "found_city": "Plattsburgh", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "44.69168 N", "found_GPS_long": "73.46125 W", "found_year": 2025, "p_institution": { "institution_code": "SNYP", "institution_name": "State University of New York-Plattsburgh", "institution_logo": "https://phagesdb.org/media/institutions/PlattsburghSeal.png", "institution_url": "", "institution_city": "Plattsburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil Sample was collected off of the Saranac River Trail on the campus of Plattsburgh State. the soil itself was under a few inches of snow and frozen.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are clear, indicating a lytic phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kimballdog_Plaque.pdf", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-05-07T12:47:19-04:00", "date_modified": "2025-07-11T12:34:16-04:00" }, { "phage_name": "Kimbap", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My car is named mochi, however my best friend calls my car \"Bap\" and bap means rice in Korean. The Kim is because that is my last name. In korean the last name comes first then the name. Therefore, the name of this phage is Kimbap.", "finder_name": "Nicole Kim", "found_city": "Loma Linda", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "34.052387 N", "found_GPS_long": "117.237335 W", "found_year": 2021, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": true, "discovery_notes": "I had collected the soil from the lettuce field in my backyard at around 12 P.M. Then I had dug an inch deep before collecting soil. The top of the soil was completely dry, but as I started digging, the soil started to get a bit moist. However, the soil was only partially moist and more on the dry side that contained some organic material.", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "clear, small, and round", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-05-25T09:46:00-04:00", "date_modified": "2022-10-20T11:27:16-04:00" }, { "phage_name": "Kimberlee", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Jessica Rose Hunter", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.816667 S", "found_GPS_long": "30.933333 E", "found_year": 2013, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Sample taken from University flower bed.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium sized, clear plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-31T09:31:17-04:00", "date_modified": "2017-09-24T10:40:34-04:00" }, { "phage_name": "Kimberlium", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Amanda Richman", "found_city": "Gettysburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.835700 N", "found_GPS_long": "77.235600 W", "found_year": 2014, "p_institution": { "institution_code": "GTTY", "institution_name": "Gettysburg College", "institution_logo": "https://phagesdb.org/media/institutions/Gettysburg_College.png", "institution_url": "http://www.gettysburg.edu/", "institution_city": "Gettysburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.836144", "institution_longitude": "-77.23780" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-02-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1329, "finishing_reactions": 0, "genome_length": 56826, "gcpercent": "61.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CCGATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 105, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kimberlium_Final.dnam5", "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KR935214", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kimberlium.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-17T15:44:47-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kimbrough", "old_names": "Jayme", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": 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"strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kimchuk_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kimchuk_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/200x200_Kim.png", "dnam_file": null, "date_added": "2023-04-04T10:14:26-04:00", "date_modified": "2024-02-25T15:28:11-05:00" }, { "phage_name": "KimJongPhill", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a reference to North Korean Politician and Supreme Leader Kim Jong-il. The nickname is a running joke between my friends and I because my name is Phill.", "finder_name": "Phillip Long", "found_city": "Baltimore", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.36481 N", "found_GPS_long": "76.47934 W", "found_year": 2020, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Recovered from a backyard pepper garden Rosedale, MD. \r\n\r\nSoil was dark brown, taken the morning after light rain the night before Garden is usually fertilized, but has not been for the past 5 months.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BR", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 687, "finishing_reactions": 0, "genome_length": 82521, "gcpercent": "64.0", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 115, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KimJongPhill_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-03-23T12:46:19-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KimJongPhill_Flat.txt", "qced_genbank_file_date": "2021-03-23T12:46:19-04:00", "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MW822144", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KimJongPhill_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KimJongPhill_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/KimJongPhill_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KimJongPhill.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KimJongPhill_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KJP_6_Thumb.png", "dnam_file": null, "date_added": "2020-09-28T10:32:17-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KimK", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We basically just kept puttin names out in the air and trying them to see if they were taken, and KimK was not taken as of now.", "finder_name": "S O'Connor, E Turner, S Desimone, J Casimir", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.38399 N", "found_GPS_long": "72.53109 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found near a dorm hall building. Next to trees and weeds and grass, in a muddy area near concrete.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "We have very small plaques, many very tiny ones, that make clear spots in the bacteria. Small and circular with no pigmentation.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-25T15:07:10-04:00", "date_modified": "2025-03-25T15:07:10-04:00" }, { "phage_name": "KimmiR", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "The phage is named after its discoverer", "finder_name": "Kim Robertson", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil sample taken from the side of a garage at discoverers home", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "turbid plaques, take two days to show clearly on M. smegmatis", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-10T11:37:12-04:00", "date_modified": "2017-09-24T10:40:51-04:00" }, { "phage_name": "Kimmo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We originally wanted to name our phage \"bonk\" because funny noise, however that name was taken(sadness). We then randomly generated names until we found Kimmo which we thought flowed off the tongue nicely and we stuck to it.", "finder_name": "Benjamin O'Guin", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.38916 N", "found_GPS_long": "72.52455 W", "found_year": 2022, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Ben was walking to his lab when he saw a patch of dirt. He was listening to his favorite song, Dark Horse by Katy Perry. He knelt down in his favorite pants and scooped up some dirt next to the Morrill 3 at Umass Amherst.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1mm in diameter, clear centers, fuzzy edges. Circular with irregular edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-03-09T14:18:55-05:00", "date_modified": "2024-02-25T15:28:01-05:00" }, { "phage_name": "Kimmy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name of pet", "finder_name": "Sarah Sorflaten", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.23678 N", "found_GPS_long": "97.14878 W", "found_year": 2023, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "It was taken at 6:08 PM on August 22nd. The temperature was 101°F and dry. I collected about 3-4 cm from the top, and the soil I collected was very dry and firm. The air pressure was 29.91 inHG.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Circular .5mm clear morphology", "lysogeny_notes": "Negative results", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "baarnensis", "strain_name": "NRRL B-2842", "strain_species": { "id": 90, "genus": "Streptomyces", "species_name": "baarnensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 90, "genus": "Streptomyces", "species_name": "baarnensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kimmy_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kimmy_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-07T09:19:41-05:00", "date_modified": "2024-02-25T15:28:20-05:00" }, { "phage_name": "KimmyK", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Allie Harvey", "found_city": "Greensburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.308597 N", "found_GPS_long": "79.558012 W", "found_year": 2016, "p_institution": { "institution_code": "STHL", "institution_name": "Seton Hill University", "institution_logo": "https://phagesdb.org/media/institutions/setonhill.jpg", "institution_url": "http://www.setonhill.edu/", "institution_city": "Greensburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.310649", "institution_longitude": "-79.55630" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "DC", "temperate": true }, "psubcluster": { "subcluster": "DC1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-12-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1344, "finishing_reactions": 0, "genome_length": 58755, "gcpercent": "67.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "When sequenced, this sample also had a Cluster B1 mycobacteriophage in it.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KimmyK_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-06-07T18:26:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KimmyK_flat.txt", "qced_genbank_file_date": "2018-06-07T18:26:32-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH479917", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KimmyK.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-13T14:52:51-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kimona", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "The name of the phage is inspired by the finders First name.", "finder_name": "Kimona Rampersadh", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "30.21467 S", "found_GPS_long": "30.787953 E", "found_year": 2016, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This soil sample was collected from a residential area, Umkomaas. The soil was isolated from a garden plot directly in front of a house. The soil sample was taken 4-5cm deep and appeared to be moderately dry. It can be described as dry,dark red soil. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A19" }, "morphotype": "SIPHO", "plaque_notes": "Plaques appeared medium sized and moderately turbid with a \"halo\".", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-05-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2244, "finishing_reactions": 0, "genome_length": 50283, "gcpercent": "64.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGCGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 87, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kimona.gbf", "qced_genbank_file_date": "2017-07-14T09:38:44-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF472895", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kimona_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kimona_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kimona.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kimona_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kimona_EMPic_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Kimona.dnam5", "date_added": "2016-07-11T16:04:17-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KimoTech", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our phage name is KimoTech, named after the sterilization wipes we use to clean our workbenches. To us, it represents the cleanliness and precision that we try to portray in our phage work.", "finder_name": "C.Nann; M. Safi; C. Santry; A. Saini", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.39398 N", "found_GPS_long": "72.52521 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Located outside Morill 3 Science Center, our phage was collected from relatively damp soil. Near the stairway, where no trees or bushes were present, the soil was collected approximately 4 inches below the surface.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques vary from 1-3 mm in diameter with a circular shape, smooth edges, and fairly cloudiness.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kimotech_plaque_thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-10T08:30:32-04:00", "date_modified": "2024-02-25T15:28:27-05:00" }, { "phage_name": "KimPhossible", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Abigail King and Midhat Adnan", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.168889 N", "found_GPS_long": "75.003333 W", "found_year": 2021, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-08T11:44:30-05:00", "date_modified": "2022-03-16T11:02:08-04:00" }, { "phage_name": "KimPossible", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joseph Pitts, Kimbrionna Hunter, Parker Thieneman ", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "37.2 N", "found_GPS_long": "79.9 W", "found_year": 2017, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-04-13T13:51:42-04:00", "date_modified": "2017-04-24T16:04:29-04:00" }, { "phage_name": "Kimtree", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joe Wagner and Simon Menso", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.665987 N", "found_GPS_long": "117.403987 E", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We collected the soil sample from beneath a tree next to a lake on Gonzaga campus.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kimtree_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kimtree_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kimtree_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kimtree_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-04-05T22:17:36-04:00", "date_modified": "2020-09-17T14:07:37-04:00" }, { "phage_name": "Kimya", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after Kimya Dawson of the Uncluded, and formerly the Moldy Peaches.", "finder_name": "Erin Burba", "found_city": "Paducah", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "37.067556 N", "found_GPS_long": "88.65764 W", "found_year": 2013, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "I collected my soil sample from the compost heap in my backyard because it produced an optimal condition of bacterial growth. Enrichment and analysis showed that there was a high concentration of phage in the sample.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "3-4 mm diameter, roughly round plaques that are clear in the center with a haloed region surrounding. Plaques appear after 24 hours incubation, but the halo only develops after 48 hours incubation.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kimya_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kimya_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kimya_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kimya_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kimya_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-10-15T11:40:35-04:00", "date_modified": "2020-09-17T14:05:31-04:00" }, { "phage_name": "Kimye843", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Angelica Goudelock", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.784905 N", "found_GPS_long": "79.939051 W", "found_year": 2016, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": false, "discovery_notes": "I used soil that was located on Calhoun Street outside of the Bellsouth Building. It had rained just the day before.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kimye843_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kimye843_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-20T14:16:54-04:00", "date_modified": "2020-09-17T14:07:59-04:00" }, { "phage_name": "Kinat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Mona Kang, Hanna Kang", "found_city": "Lutherville", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.45946 N", "found_GPS_long": "76.66254 W", "found_year": 2022, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 23, "growth_notes": "", "pcluster": { "cluster": "BK", "temperate": false }, "psubcluster": { "subcluster": "BK1" }, "morphotype": "SIPHO", "plaque_notes": "Clear, circular plaques with a diameter of 0.5+-0.2mm", "lysogeny_notes": "Virulent", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kinat_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kinat_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kinat_Phage_Thumb_41iY2DW.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/S2_G2_Kinat_Thumb.png", "dnam_file": null, "date_added": "2022-10-07T07:45:29-04:00", "date_modified": "2024-02-25T15:27:52-05:00" }, { "phage_name": "Kinbote", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "David Dittrich", "found_city": "Williamsburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.271389 N", "found_GPS_long": "76.721944 W", "found_year": 2013, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": true, "discovery_notes": "Titer: 64.e+9 pfu/ml", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "Q", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-01-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2027, "finishing_reactions": 0, "genome_length": 53746, "gcpercent": "67.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 14, "overhang_sequence": "TAAGCCGCGCGGTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 84, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kinbote_Final.dnam5", "submitted_minimal_dnam_file": null, "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kinbote_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kinbote_CoverSheet.docx", "submitted_annotation_date": "2014-05-15T17:48:17-04:00", "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KT222940", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kinbote.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-18T11:19:58-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kindr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "combination of lab partner's names \r\nKINDR", "finder_name": "D. Barreto, N. Ahmadi, K, Rosas, A. Shah", "found_city": "Prospect Park", "found_state": "NJ", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2020, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "Date collected - August 31, 2020", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-12-02T15:07:28-05:00", "date_modified": "2021-05-25T13:14:23-04:00" }, { "phage_name": "Kindred", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We liked how it sounded. ", "finder_name": "Hoang Nguyen, Ananda Wiwi", "found_city": "Pensacola", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "UWFL", "institution_name": "University of West Florida", "institution_logo": "https://phagesdb.org/media/institutions/UWestFlorida.png", "institution_url": "http://uwf.edu/", "institution_city": "Pensacola", "institution_state": "FL", "institution_country": "United States", "institution_latitude": "30.546962", "institution_longitude": "-87.21669" }, "enriched_sample": null, "discovery_notes": "Collected our sample from the UWF garden soil. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque morphology indicates temperate phages. About 1-2 mm in diameters and most are relatively round.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kindred_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kindred_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kindred_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kindred_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-03T05:08:59-05:00", "date_modified": "2020-09-17T14:06:15-04:00" }, { "phage_name": "Kine", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jocelyn Nieze", "found_city": "Grand Rapids", "found_state": "MI", "found_country": "United States of America", "found_GPS_lat": "42.934546 N", "found_GPS_long": "85.587387 W", "found_year": 2022, "p_institution": { "institution_code": "CALV", "institution_name": "Calvin University", "institution_logo": "https://phagesdb.org/media/institutions/CalvinLogo.png", "institution_url": "http://www.calvin.edu/", "institution_city": "Grand Rapids", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.930074", "institution_longitude": "-85.58763" }, "enriched_sample": true, "discovery_notes": "Sample was found ~2 feet off of the path to the left of Calvin University's dormitory, KHVR. Sample was found under about 2-3 inches of moist leaves.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were almost completely transparent in almost perfect circular shapes, with clear and defined edges. The diamerter of each plack was ~1mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "equi", "strain_name": "NRRL B-16538", "strain_species": { "id": 31, "genus": "Rhodococcus", "species_name": "equi", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus_equi" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 31, "genus": "Rhodococcus", "species_name": "equi", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus_equi" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kine_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/Kine_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-30T14:56:49-05:00", "date_modified": "2024-02-25T15:28:06-05:00" }, { "phage_name": "King", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jhanai Campbell", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-09T11:40:01-04:00", "date_modified": "2020-09-17T14:10:06-04:00" }, { "phage_name": "King2", "old_names": "KingII", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The shorthand name for our host, Arthro, sounds a lot like Arthur, as in King Arthur.", "finder_name": "Jeffrey Keller", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.87054 N", "found_GPS_long": "117.244217 W", "found_year": 2018, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "The sample was collected from wet, somewhat muddy soil with organic matter growing in the top. The soil was collected from the surface.", "isolation_temperature": 23, "growth_notes": "", "pcluster": { "cluster": "AO", "temperate": false }, "psubcluster": { "subcluster": "AO1" }, "morphotype": "MYO", "plaque_notes": "The plaques were clear and small and generally very consistent in their size.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-02-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1499, "finishing_reactions": 0, "genome_length": 50346, "gcpercent": "63.2", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 73, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/King2_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-07-16T16:21:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/King2_flat.txt", "qced_genbank_file_date": "2020-07-16T16:21:40-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT776811", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingII_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/King2_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/King2.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingII_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/King2_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-28T19:52:35-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingArthur", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name came from the ancient King Arthur, we chose it because King Arthur killed monsters and giants, hopefully like how our phage will someday kill bacteria and be used to come up with anti-bacterial treatments.", "finder_name": "A. Redington, K. Regan, P. Arunkumar, L. Joseph", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.388918 N", "found_GPS_long": "72.52353 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Sample was found near a greenhouse on the college campus, in wet soil, dirt was kicked up by a car", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1 mm, had a halo around it, small circle", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kingarthur_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/kingarthur_empic_thumb.jpg", "dnam_file": null, "date_added": "2024-03-28T11:48:13-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "KingBernhardt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We took both our last names together in the order we did because it sounded good.", "finder_name": "Alissa Bernhardt, Peytan King", "found_city": "Butte", "found_state": "MT", "found_country": "USA", "found_GPS_lat": "46.0038 N", "found_GPS_long": "112.5348 W", "found_year": 2019, "p_institution": { "institution_code": "MTEC", "institution_name": "Montana Technological University", "institution_logo": "https://phagesdb.org/media/institutions/mtechlogo.png", "institution_url": "http://www.mtech.edu/", "institution_city": "Butte", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "46.012558", "institution_longitude": "-112.5576" }, "enriched_sample": true, "discovery_notes": "My partner and I discovered our plaque from enriched potting soil.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-03-07T20:19:50-05:00", "date_modified": "2019-04-02T23:31:55-04:00" }, { "phage_name": "Kingbert", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is named after a pet.", "finder_name": "N.O. & K.C.", "found_city": "Richardson", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.99215 N", "found_GPS_long": "96.68307 W", "found_year": 2018, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": false, "discovery_notes": "found in garden soil near apartment complex, soil fairly moist from previous day rain ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques are about 3mm to 4mm in diameter, circular, and clear. Due to the appearance of the plaques the phage is believed to be lytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/PhoDacBiet_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kingbert_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kingbert_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/PhoDacBiet_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kingbert_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-12-03T12:40:26-05:00", "date_modified": "2020-09-17T14:10:17-04:00" }, { "phage_name": "KingBob", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kyle Moesle", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.995262 N", "found_GPS_long": "83.007096 W", "found_year": 2017, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AK", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-08-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": 43950, "gcpercent": "61.9", "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "GCTTACCGTGATA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 60, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KingBob_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-05-31T12:29:16-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KingBob_flat.txt", "qced_genbank_file_date": "2018-05-31T12:29:16-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH450121", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KingBob.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-06-03T23:47:39-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingBoo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage KingBoo after the ghost in the Mario Series.", "finder_name": "Alyssa Chau and Harshith Amarala", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "39.998084 N", "found_GPS_long": "105.251904 W", "found_year": 2023, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken from a patch of soil in front of Williams Village Dining Hall. The sample was taken on 9-4-23 at approximately at 8:08PM.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Temperate phage with 6mm plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingBoo_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/KingBoo_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/KingBoo_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-06T08:59:10-05:00", "date_modified": "2024-02-25T15:28:25-05:00" }, { "phage_name": "KingBulbie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Our phage name is KingBulbie because all of our research revolves around it, also because our group that worked on it is named the Knights of the Phage Table it is only right that our phage is the king.", "finder_name": "Erika Griffo", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "39.946355 N", "found_GPS_long": "75.208722 W", "found_year": 2021, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": false, "discovery_notes": "Discovered on September 2, 2021, at 12:50 pm. It was 64 degrees Fahrenheit, it was found in Philadelphia, Pennsylvania. On the surface of the dirt, between a trash can and a sidewalk.", "isolation_temperature": 18, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our phage makes teeny tiny plaque that is very clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-09T16:35:46-05:00", "date_modified": "2022-03-16T11:01:57-04:00" }, { "phage_name": "KingChadwick", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Because this soil had been raised in a tough environment and emerged as a strong, brave phage, it seemed that King Chadwick was the best name for this phage.", "finder_name": "Joseph Andoh-Baidoo", "found_city": "Williamsburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.27155 N", "found_GPS_long": "76.7164 W", "found_year": 2022, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": false, "discovery_notes": "At approximately 2: 30 P.M, I collected my bacteria soil sample at 37.27155° North and 76.71640° West and at an elevation of 65° Northeast. A little disturbed by the smell that was being emitted from the sewage area, I choose to look more into the ecosystem of the sewage lake near the Randolph complex and the frat houses in front of the Commons dining hall. Sadly, my sneakers witnessed the true horror of the moist swampy soil. However, this setup made me more determined to use this area for my soil sample. After retrieving about a fistful/ 5-7 scoops of soil, I submitted my sample for review, hoping for the best.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingChadwick_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/KingChadwick_EMPic_yRAVLPU.tiff", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/KingChadwick_VirtualDigest.jpg", "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-29T14:46:57-05:00", "date_modified": "2024-02-25T15:28:04-05:00" }, { "phage_name": "KingCurtis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name for the phage came from inside joke with the finder and her friends", "finder_name": "Elyssa Hanson", "found_city": "Bethlehem", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.602774 N", "found_GPS_long": "75.379489 W", "found_year": 2016, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": null, "discovery_notes": "Found in February 2016, soil was muddy, snow on the ground, temperature was 42°F, collected outside of Chi Phi Fraternity at Lehigh University at approximately 8PM", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-05-16T08:20:59-04:00", "date_modified": "2020-09-17T14:07:17-04:00" }, { "phage_name": "KingCyrus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name came from the ancient Persian leader, Cyrus the Great.", "finder_name": "Cyrus Crevits", "found_city": "Blacksburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.226402 N", "found_GPS_long": "80.409113 W", "found_year": 2019, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "This Phage was found in a fire pit using the ash as the soil sample.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "The plaques are extremely temperate and mainly visible under strong light.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 43, "finishing_reactions": 0, "genome_length": 53946, "gcpercent": "63.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 91, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KingCyrus_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-05-14T17:00:08-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KingCyrus_flat.txt", "qced_genbank_file_date": "2020-05-14T17:00:08-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT498041", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingCyrus_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KingCyrus_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KingCyrus_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KingCyrus.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingCyrus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KingCyrus_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2019-11-11T18:34:11-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingDavid", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Since \"David\" is Mr. Bergman's first name as well as Mr. Nortch's middle name, we knew we wanted to base our phage's name on this fact. We ultimately decided on \"KingDavid\" because our phage was initially forced to go through some very hard and trying times after its initial discovery in order to actually survive, at which point we discovered that it was actually extremely different from a majority of phages that have been discovered up to this point.", "finder_name": "David Bergman and Zach Nortch", "found_city": "Longview", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.464232 N", "found_GPS_long": "94.723808 W", "found_year": 2017, "p_institution": { "institution_code": "LETO", "institution_name": "LeTourneau University", "institution_logo": "https://phagesdb.org/media/institutions/LeTourneau.png", "institution_url": "http://www.letu.edu/", "institution_city": "Longview", "institution_state": "TX", "institution_country": "United States", "institution_latitude": "32.466083", "institution_longitude": "-94.72640" }, "enriched_sample": true, "discovery_notes": "Found South of the LeTourneau University Society houses' parking lot, immediately North of what appeared to be a firepit, approximately 1/2\" below the surface. The soil that was collected was very black, rich and moist, with a little organic detritus.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingDavid_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KingDavid_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingDavid_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KingDavid_EM_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-04T11:26:35-04:00", "date_modified": "2020-09-17T14:08:42-04:00" }, { "phage_name": "Kingdom", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Meghan Bowler", "found_city": "Park Ridge", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "42.00139 N", "found_GPS_long": "87.861667 W", "found_year": 2017, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": true, "discovery_notes": "A river running through the Dam Number 4 Forest Preserve across from Maine South High School. Part of the Des Plaines River.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large, circular, and clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kingdom_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kingdom_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kingdom_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kingdom_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-09T08:08:50-04:00", "date_modified": "2020-09-17T14:08:02-04:00" }, { "phage_name": "Kingfisher", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Chernoh", "found_city": "Bonamanzi Game Park, Hluhluwe", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Kingfisher was found at bank of a free-flowing river in a game reserve. He was extracted from a very swampy, highly aerated and very dark loam soil sample. The high-yielding farms around the area suggests that Kingfisher was well supplied with nutrients year-round. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small circular plaques scattered all around the plate in a finely dispersive pattern. Plaques very clear and easily detectable. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kingfisher_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kingfisher_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kingfisher_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kingfisher_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-07-20T06:16:23-04:00", "date_modified": "2017-09-24T10:41:23-04:00" }, { "phage_name": "KingGizz", "old_names": "KingGizz", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "kGizz is a name derived from the legendary Australian progressive rock group \"King Gizzard and the Lizard Wizard\", who's music has touched and expanded the minds of millions.", "finder_name": "Hayden Kaleiwahea & Ava Kapp", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.3957 N", "found_GPS_long": "117.2402 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": null, "discovery_notes": "KGizz was discovered in between two buildings, at west facing side of the base of a tree.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "60 nm tail, 90 nm capsid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KGizz_Plaque_yFXki0E.JPG", "em_file": "https://phagesdb.org/media/emPics/KGizz_EMPic_nRyJQgk.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Box_1_B9.jpg", "dnam_file": null, "date_added": "2022-12-02T09:50:43-05:00", "date_modified": "2024-02-25T15:28:09-05:00" }, { "phage_name": "KingGodZilla", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We liked the name.", "finder_name": "Francisco Ramirez", "found_city": "Waukegan", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "42.357 N", "found_GPS_long": "87.835 W", "found_year": 2019, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": true, "discovery_notes": "The Soil Sample was found in my garden near the potato .", "isolation_temperature": 19, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-09T22:04:39-05:00", "date_modified": "2020-09-17T14:11:24-04:00" }, { "phage_name": "KingHenry", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "King Henry VIII was known for being a tyrannous ruler, which is consistent with the ruthlessness with which the phage kills bacteria as a means to reproduce itself.", "finder_name": "Ramsha Chaudhary and Schuyler Brooks", "found_city": "Ellicott City", "found_state": "MD", "found_country": "United States of America", "found_GPS_lat": "39.28 N", "found_GPS_long": "76.8 W", "found_year": 2023, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "The soil sample taken was damp from heavy rainfall the previous day.", "isolation_temperature": 24, "growth_notes": "", "pcluster": { "cluster": "BB", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small-Medium, round, clear, 24-48 hour growth cycle", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KingHenry_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KingHenry_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/S4G7_01-thumb.png", "dnam_file": null, "date_added": "2023-10-12T12:30:19-04:00", "date_modified": "2024-02-25T15:28:16-05:00" }, { "phage_name": "KingHenry3rd", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Janaye' Brown", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KingHenry3rd_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KingHenry3rd_EMPic_Thumb.png", "dnam_file": null, "date_added": "2012-11-15T13:28:09-05:00", "date_modified": "2020-06-17T22:47:11-04:00" }, { "phage_name": "Kingin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "English to Japanese translation of \"gold and silver\"", "finder_name": "Alex Salinas", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.731976 N", "found_GPS_long": "117.175008 W", "found_year": 2018, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Soil collected two inches from top soil underneath a row of hedges ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear plaques around 1-3 mm in diameter on average", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-07-02T15:54:23-04:00", "date_modified": "2020-09-17T14:09:45-04:00" }, { "phage_name": "Kingivan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My fraternity big brother was homecoming king", "finder_name": "Benjamin Nguyen", "found_city": "Monroe", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.538013 N", "found_GPS_long": "92.065869 W", "found_year": 2020, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": null, "discovery_notes": "Found under a faucet outside a house\r\nDirt was not wet when soil was taken", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "large plaque", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-18T13:52:24-05:00", "date_modified": "2021-01-28T11:04:35-05:00" }, { "phage_name": "KingJames", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after the esteemed basketball player LeBron James, also known as King James.", "finder_name": "Nitish Sharma and Carl Gonzales", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "39.95507 N", "found_GPS_long": "75.18744 W", "found_year": 2022, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Sample Site Description: Grassy lawn, with some trees", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingJames_Plaque.heic", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/10894072-5D66-4C15-8D3A-79282772_1.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-21T08:26:02-04:00", "date_modified": "2024-02-25T15:28:05-05:00" }, { "phage_name": "KingJean", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "King from my dog Theodores middle name Kingsley and Jean from my middle name", "finder_name": "Alliya Haley", "found_city": "St.louis", "found_state": "MO", "found_country": "United states of America", "found_GPS_lat": "38.677702 N", "found_GPS_long": "90.35634 W", "found_year": 2024, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "Discovered at the residence of Alliya Haley 8539 Appleton Dr \r\nBack yard in the soil of a garden bed with pumkljngs growing. Moist soil", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque has been relatively all smalll and multiple, no single big plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingJean_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KingJean_EmPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-11-15T14:22:30-05:00", "date_modified": "2025-04-04T11:37:31-04:00" }, { "phage_name": "Kingjellybean", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Creepy jellybean guy from Rick and Morty.", "finder_name": "Olivia Johnson", "found_city": "Lincoln", "found_state": "NE", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "Was found by the back door trashcans for Johnson Hall.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "34x10^10", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kingjellybean_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kingjellybean_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-02-22T14:36:36-05:00", "date_modified": "2025-07-11T12:34:12-04:00" }, { "phage_name": "KingJellyfish", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Inspired by of the shape of the tail, as it kind of looks like a jellyfish, but \"Jellyfish\" was already taken so we had to go bigger.", "finder_name": "Evan Wood and 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"strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingJellyfish_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KingJellyfish_EMPic_2z0MYn6.TIF", "digest_file": "https://phagesdb.org/media/digestPics/KingJellyfish_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-04-15T17:00:09-04:00", "date_modified": "2024-02-25T15:27:58-05:00" }, { "phage_name": "KingJLP", "old_names": "", "program": { "short_name": "KBRIN", "program_name": "Kentucky Biomedical Infrastructure Network Small Genomes Discovery Program", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "JLP", "found_city": "", "found_state": "", "found_country": "", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "GTWN", "institution_name": "Georgetown College", "institution_logo": "https://phagesdb.org/media/institutions/georgetowncollege_logo.jpg", "institution_url": "http://www.georgetowncollege.edu/", "institution_city": "Georgetown", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-06-07T11:02:05-04:00", "date_modified": "2020-09-17T14:06:52-04:00" }, { "phage_name": "KingJoffer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Aditi Lohar's partner for this exercise was Arka Bhattacharya. 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", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-12T11:14:54-05:00", "date_modified": "2024-02-25T15:27:48-05:00" }, { "phage_name": "KingKamren", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kamren Harden", "found_city": "Plattsburgh", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "44.69179 N", "found_GPS_long": "73.46351 W", "found_year": 2023, "p_institution": { "institution_code": "SNYP", "institution_name": "State University of New York-Plattsburgh", "institution_logo": "https://phagesdb.org/media/institutions/PlattsburghSeal.png", "institution_url": "", "institution_city": "Plattsburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 13, "growth_notes": "", "pcluster": { "cluster": "EK", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "Small turbid plaques, approximately 1 mm in diameter", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-02-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4991, "finishing_reactions": 0, "genome_length": 54721, "gcpercent": "57.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 50, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KingKamren_CompleteNotes.pptx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KingKamren_Minimal_Final_BPhMbJN.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KingKamren_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KingKamren_CoverSheet.docx", "submitted_annotation_date": "2024-05-29T09:04:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KingKamren_flat.txt", "qced_genbank_file_date": "2024-05-29T09:04:40-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP978791", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KingKamren.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-13T10:12:06-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingKhaled", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage comes from the inspirational musical genius, DJ Khaled. Khaled's message of appreciation and determination has resonated within our hearts, so in his honor and to show that we appreciate and admire our phage, we named it KingKhaled.", "finder_name": "Josh Maret", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.95792 N", "found_GPS_long": "75.1906 E", "found_year": 2016, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Date collected: 9/19/16 at 2:47 p.m.\r\nDepth beneath surface: 3.5 inches (approximately)\r\nApproximate Temperature: 72 degrees Fahrenheit\r\nLocation: Outside of Towers Hall of Drexel University campus\r\nSite description: Damp, wet, raining, taken from garden soil near front entrance of Towers Residence Hall building on Drexel University campus", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Size: Approximately 2 mm in diameter\r\nTurbidity: Very clear and defined plaques with little turbidity\r\nMargins: Sharp, not fuzzy; well-defined", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingKhaled_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/KingKhaled_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingKhaled_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-26T10:59:13-05:00", "date_modified": "2020-09-17T14:07:28-04:00" }, { "phage_name": "KingKong", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Favorite movie.", "finder_name": "Bridgette Martin", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.389372 N", "found_GPS_long": "72.524704 W", "found_year": 2021, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Grass area by Morrill Science Center Building III sign.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Makes two different sizes (big and small). Big phages are 5mm in diameter, bullseye shaped, and have defined edges. Small phages are 3mm, clear, circular, and have defined edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KingKong_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingKong_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KingKong_EMPic_thumb.jpg", "dnam_file": null, "date_added": "2021-10-20T15:13:24-04:00", "date_modified": "2024-09-16T14:10:06-04:00" }, { "phage_name": "KingLeonidas", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nicole Anguiano and Brandon Besharat", "found_city": "Beverly Hills", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "LOMA", "institution_name": "Loyola Marymount University", "institution_logo": "https://phagesdb.org/media/institutions/Loyola_Marymount.jpg", "institution_url": "http://www.lmu.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.970679", "institution_longitude": "-118.4174" }, "enriched_sample": true, "discovery_notes": "Found in the morning on damp, loose, and earthy soil with few rocks. Dug from approximately 6 inches from the roots of a bush, in a slightly shaded area. Several flowers and grass were nearby.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "Lysogenic. There is a small clear center area surrounded by a large, but faint cloudy ring. That ring is surrounded by another, clear ring. 0.4 cm in diameter after 24 hours, and 0.8 cm in diameter after 48.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-11-15T12:30:32-05:00", "date_modified": "2017-09-12T10:27:25-04:00" }, { "phage_name": "KingMe20", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Megan Kingsriter", "found_city": "Colorado Springs", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "38.885732 N", "found_GPS_long": "104.707011 W", "found_year": 2018, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingMe20_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingMe20_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-19T10:11:11-04:00", "date_modified": "2020-09-17T14:09:33-04:00" }, { "phage_name": "KingMidas", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "King Midas is a figure in Greek Mythology best known for his ability to turn objects or people to gold by touching them. As a result, he killed everything living that he touched, as does this phage with bacteria.", "finder_name": "Zachary Jordan", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "40.27018 N", "found_GPS_long": "97.126 W", "found_year": 2016, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "This soil was collected from underneath a sprinkler head in Keeney Quad, at Brown University. It consisted mostly of decomposing leaf and plant matter, and was damp. Collected at night, when the soil was wettest.\r\n\r\nCoordinates recorded above are likely wrong.Not consistent with the discovery notes, but put collection site in Nebraska. Scottish, a related virus nearly identical to Kingmidas was found in Keeney Quad at\r\n41.824167 N, 71.403333 W.", "isolation_temperature": 23, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Plaques are clear, indicating a lytic phage. Diameter range: 1.46 – 3.24 mm (mean = 2.41 mm plus or minus 0.1 mm SE). Fairly consistent size and circular shape, with randomized distribution throughout the agar.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1672, "finishing_reactions": 0, "genome_length": 57386, "gcpercent": "61.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGACGGCGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 105, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KingMidas_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KingMidas_Minimal_Final_qgimjeC.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KingMidas_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KingMidas_CoverSheet.pdf", "submitted_annotation_date": "2019-07-15T12:38:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KingMidas_flat.txt", "qced_genbank_file_date": "2019-07-15T12:38:32-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Complete Genome Sequence of the Cluster F1 Mycobacteriophage KingMidas", "abstract": "Subcluster F1 bacteriophage KingMidas was isolated from soil collected in Providence, Rhode Island, using Mycobacterium smegmatis mc2155 as the host. The genome is 57,386 bp and contains 105 predicted protein-coding genes but no transfer-messenger RNAs or tRNAs. This siphovirus has an icosahedral head, with a genome 99.1% identical to that of F1 mycobacteriophage Scottish.", "full_author_list": "Christine A. Byrum, Christopher A. Korey, Zachary Jordan, Yang Zhou, Sarah Taylor, Joas Alfajardo, Veronique A. Delesalle", "short_author_list": "Byrum et al", "article_url": "https://mra.asm.org/content/9/7/e01557-19", "journal": "Microbiology Resource Announcements", "journal_volume": "", "journal_issue": "", "journal_pages": "", "pub_year": "2020", "pubmed_id": "32054715" }, "in_genbank": true, "genbank_accession": "MN204502", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingMidas_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KingMidas_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/KingMidas_Digest.tif", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KingMidas.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingMidas_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KingMidas_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-09T15:05:59-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kingmustik0402", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was selected base on a common nickname.", "finder_name": "Mustapha Conteh", "found_city": "Lawrenceville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.978648 N", "found_GPS_long": "84.015612 W", "found_year": 2015, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected in a garden bed. The sample is moist, dark and very nutrient rich.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A4" }, "morphotype": "SIPHO", "plaque_notes": "(2mm) lysogenic\r\n(1mm) lysogenic\r\n(0.5mm) lytic", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-11-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2228, "finishing_reactions": 0, "genome_length": 51365, "gcpercent": "63.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kingmustik0402_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-12-31T22:03:33-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kingmustik0402.gbf", "qced_genbank_file_date": "2018-12-31T22:03:33-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK359301", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kingmustik0402_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kingmustik0402.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kingmustik0402_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Kingmustik0402.dnam5", "date_added": "2015-11-25T21:31:20-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingNeptune", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Spongebob character", "finder_name": "", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.0096 N", "found_GPS_long": "105.2691 W", "found_year": 2020, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Right next to Folsom Field on CU Boulder campus. Cluster analysis completed from stock samples by Rebecca Gonzalez, Reine Spar, Lillie Teague of CU Boulder.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Lytic phage, approximately 2 mm diameter plaque. Very circular, shaped", "lysogeny_notes": "N/A", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingNeptune_Plaque_2uxsbJJ.png", "em_file": "https://phagesdb.org/media/emPics/KingNeptune_EMPic_VjTaOZS.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingNeptune_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-03-16T10:29:29-04:00", "date_modified": "2024-03-13T07:12:01-04:00" }, { "phage_name": "KingNogBot", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's my gamer tag", "finder_name": "Isaiah McMullen", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.48028 N", "found_GPS_long": "90.32575 E", "found_year": 2024, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "Sample taken from a flowerbed in an open area. Collected from a 6in deep hole. Soil was dark and moist.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large spots covering plate", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingNogBot_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/KingNogBot_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingNogBot_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/KingNogBot_EMPic_Thumb.png", "dnam_file": null, "date_added": "2024-11-21T09:31:17-05:00", "date_modified": "2025-04-08T13:24:08-04:00" }, { "phage_name": "KingOfSoil", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is able to kill A.globiformis", "finder_name": "Hwan Lee", "found_city": "Montreal", "found_state": "", "found_country": "Canada", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "MCGL", "institution_name": "McGill University", "institution_logo": "https://phagesdb.org/media/institutions/mcgill2.jpg", "institution_url": "https://www.mcgill.ca/", "institution_city": "Montreal", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The soil was isolated from a vegetable garden. Various vegetables from cucumbers to carrots were present. The day was rather frigid, at around 15 degrees celsius, with various plants encompassing the garden as well. It had rained the day prior, making the soil a bit more wet. 50mL Tube was used, and the entire tube was filled with soil.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very round, usually very consistent in size, at around 1mm in diameter. Some plaques have a white border encompassing, most often don't.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingOfSoil_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/KingOfSoil_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KingOfSoil_Digest.tif", "vdigest_file": "https://phagesdb.org/media/vDigestPics/KingOfSoil_VirtualDigest.tif", "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-03T14:22:04-05:00", "date_modified": "2024-12-10T12:46:15-05:00" }, { "phage_name": "KingPeteI", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "After doing multiple rounds of plating, I would name each after the original phage (ex: Pete the fourth). This would make the original phage King Pete the first.", "finder_name": "Khadija Buke", "found_city": "Boston", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.3541 N", "found_GPS_long": "71.0701 W", "found_year": 2024, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": false, "discovery_notes": "This phage was found in a garden.", "isolation_temperature": 39, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very small plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingPeteI_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-11T11:10:43-05:00", "date_modified": "2024-12-11T11:10:43-05:00" }, { "phage_name": "KingPhavid", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "David Lam", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-24T12:18:15-04:00", "date_modified": "2019-10-24T12:18:15-04:00" }, { "phage_name": "KingPhillip3", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The initial agar plates created with unenriched lysates from this soil sample produced a few suspicious spots, but when each spot was independently plated, no further phage activity was noted. A name was assigned to each potential plaque, one of these being \"Phil.\" When an enriched sample soil sample was prepared and identically plated, after incubation the entire bacterial population was lysed. Thus, this new phage was named \"King Phillip III,\" for his regal performance eliminating M. Smegmatis.", "finder_name": "Robert Sottile", "found_city": "Las Vegas", "found_state": "NV", "found_country": "USA", "found_GPS_lat": "36.107222 N", "found_GPS_long": "115.143333 W", "found_year": 2018, "p_institution": { "institution_code": "UNLV", "institution_name": "University of Nevada Las Vegas", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofNevadaLasVegas.jpg", "institution_url": "https://www.unlv.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "36.108190", "institution_longitude": "-115.1431" }, "enriched_sample": true, "discovery_notes": "The soil sample from which this phage was isolated was taken from planter bed 24 at the UNLV recycling and composting center located at the above GPS coordinates taken via iPhone. The local air temperature reported by the NWS located at McCarran International Airport less than one mile from the above location was 85 degrees F. Soil conditions were moist even though local humidity was extremely low due to drip irrigation. The soil was damp but not saturated and clumped together when compressed. The sample was taken between 5 and 10 cm beneath the surface and secured in a plastic bag for transport to the lab.", "isolation_temperature": 29, "growth_notes": "", "pcluster": { "cluster": "O", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "King Phillip III creates pin-point plaques when added to naive M. Semgmatis colonies. These tiny plaques tend to cluster and form larger areas of total clearing of approximately 1mm in diameter. The initial plaques have been estimated to be about half that diameter or smaller; the size is beyond the resolution of the measuring device. All plaques are completely clear; there is no evidence of lysogenic activity. At very low concentrations, a halo can be observed around the growing clustered plaques, but this seems to be the result of lower phage volume and not a temperate phage. Plaque morphology has been consistent since initial isolation.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-28", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 65441, "finishing_reactions": 0, "genome_length": 71330, "gcpercent": "65.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "GTCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 122, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingPhillipIII_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/KingPhillip3_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KingPhillip3.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingPhillipIII_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-25T14:08:37-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingPhon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brendan Lintner & Ronald Sega", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.006 N", "found_GPS_long": "105.2676 W", "found_year": 2022, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Likely temperate", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingPhon_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/KingPhon_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-06T14:46:08-05:00", "date_modified": "2024-02-25T15:27:58-05:00" }, { "phage_name": "KingSeniorIII", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Shelby Tiller", "found_city": "Spokane ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.665 N", "found_GPS_long": "117.396944 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "After a week growth period the plaque formed is about 3 to 4 mm in diameter and clear. The plaque has a turbid ring in the center that makes its appearance distinctive.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingSeniorIII_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/KingSeniorIII_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingSeniorIII_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KingSeniorIII_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-04-05T21:57:13-04:00", "date_modified": "2020-09-17T14:07:37-04:00" }, { "phage_name": "KingSimon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My dog was named Simon and I miss him every day.", "finder_name": "Joey Colletti, Brady Miller", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.736 N", "found_GPS_long": "117.166 W", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Soil was moist on top, but was dry under top layer. Phage was discovered 1.5 cm under the surface of soil. Site was mossy, shaded, and full of various plants.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-29T21:44:44-04:00", "date_modified": "2019-10-29T21:44:44-04:00" }, { "phage_name": "Kingsley", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I just thought it sounded good", "finder_name": "Steven Black", "found_city": "Blacksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.24731 N", "found_GPS_long": "80.4175 W", "found_year": 2015, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "From Potted Plant (genus Schlumbergera)\r\nPlant had sat outside for a month, then was moved inside for over a month before the sample was taken.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "varying sizes of plaques, but all are very small and clear", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-12-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1576, "finishing_reactions": 0, "genome_length": 60300, "gcpercent": "61.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CCGATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 112, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kingsley_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kingsley_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kingsley_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kingsley_CoverSheet.pdf", "submitted_annotation_date": "2016-05-11T13:30:07-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kingsley_flat.txt", "qced_genbank_file_date": "2017-03-06T18:41:21-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KY702574", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kingsley_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kingsley_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kingsley_Digest_dvsKlS3.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kingsley.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kingsley_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kingsley_EMPic_Thumb.jpeg", "dnam_file": "https://phagesdb.org/media/dnam/Kingsley.dnam5", "date_added": "2015-11-09T09:58:02-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kingsman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is from our high school, where my lab partner and I both attended.", "finder_name": "Holly Spiritoso & Helen Flynn", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.403694 N", "found_GPS_long": "85.918889 W", "found_year": 2017, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "The sample was collected one flat land near trees. It had rained the night before so the soil was moist.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Long tail about 187nm\r\ncapsid diameter about 57nm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kingsman_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kingsman_EMPic_ef1z7yb.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KINGSMAN_HF_HS_1130_0026_copy.jpg", "dnam_file": null, "date_added": "2017-11-26T18:34:04-05:00", "date_modified": "2020-09-17T14:08:46-04:00" }, { "phage_name": "Kingsolomon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Molly-Catherine Brantley & Brett Farran", "found_city": "Pensacola", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "30.549600 N", "found_GPS_long": "87.217700 W", "found_year": 2016, "p_institution": { "institution_code": "UWFL", "institution_name": "University of West Florida", "institution_logo": "https://phagesdb.org/media/institutions/UWestFlorida.png", "institution_url": "http://uwf.edu/", "institution_city": "Pensacola", "institution_state": "FL", "institution_country": "United States", "institution_latitude": "30.546962", "institution_longitude": "-87.21669" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L3" }, "morphotype": "SIPHO", "plaque_notes": "Small clear plaques", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2007, "finishing_reactions": 0, "genome_length": 69537, "gcpercent": "59.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 110, "num_tRNAs": 10, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kingsolomon_CompleteNotes_S8A63LG.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kingsolomon_Minimal_Final_ysX9e4y.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kingsolomon_Authors_f0chHbK.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kingsolomon_CoverSheet.docx", "submitted_annotation_date": "2017-05-23T10:53:17-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kingsolomon_vD8IwpX.gbf", "qced_genbank_file_date": "2017-05-23T10:53:17-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Complete Genome Sequences of Mycobacteriophages Clautastrophe, Kingsolomon, Krypton555, and Nicholas", "abstract": "We report here the complete genome sequences of four subcluster L3 mycobacteriophages newly isolated from soil samples, using Mycobacterium smegmatis mc2155 as the host. Comparative genomic analyses with four previously described subcluster L3 phages reveal strong nucleotide similarity and gene conservation, with several large insertions/deletions near their right genome ends.", "full_author_list": "Chung HM, D'Elia T, Ross JF, Alvarado SM, Brantley MC, Bricker LP, Butler CR, Crist C, Dane JM, Farran BW, Hobbs S, Lapak M, Lovell C, Ludergnani N, McMullen A, Mirza SA, Thrift N, Vaughan DP, Worley G, Ejikemeuwa A, Zaw M, Albritton CF, Bertrand SC, Chaudhry SS, Cheema VA, Do C, Do ML, Duong HM, El-Desoky DH, Green KM, Lee RN, Thornton LA, Vu JM, Zahra MN, Cresawn SG, Stoner TH, Garlena RA, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF", "short_author_list": "Chung HM et al", "article_url": "https://www.ncbi.nlm.nih.gov/pubmed/29122864?report=abstract", "journal": "Genome Announcements", "journal_volume": "5", "journal_issue": "45", "journal_pages": "", "pub_year": "2017", "pubmed_id": "29122864" }, "in_genbank": true, "genbank_accession": "MF140413", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kingsolomon_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kingsolomon_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Kingsolomon_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kingsolomon.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kingsolomon_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kingsolomon_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Kingsolomon.dnam5", "date_added": "2016-11-07T11:48:26-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingSt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emily Carrig", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": true, "discovery_notes": "Warm/Humid conditions\r\nFound just off of a parking lot in dry soil\r\nKingSt was chosen because the phage was found on King St. in downtown Charleston\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "", "plaque_notes": "Cloudy\r\nSmall\r\nSpread out", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KingSt_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KingSt_EMPic_Thumb.png", "dnam_file": null, "date_added": "2011-11-29T04:55:57-05:00", "date_modified": "2020-06-01T18:55:48-04:00" }, { "phage_name": "Kingston", "old_names": "Liberry", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Chance Davis", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "36.9854 N", "found_GPS_long": "86.4529 W", "found_year": 2023, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were normally around 3mm and were turbid. There were some clear mutants in the end stages of dilutions.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kingston_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kingston_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kingston_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/IMG_4570phageDB.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Chance_Davis_16.jpg.png", "dnam_file": null, "date_added": "2023-10-17T09:03:45-04:00", "date_modified": "2023-12-08T07:38:35-05:00" }, { "phage_name": "KingstonB", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my dog Kingston Bell.", "finder_name": "Ayanna Bell", "found_city": "New Brighton", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.742897 N", "found_GPS_long": "80.310585 E", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "My yard right next to the pavement. The patch was basically dead because I have a dog. There was a lot of grass mixed in with the dirt and was frozen when collected. It became moist when the dirt melted. \r\n\r\nGroup Members are Ayanna Bell, Sophia DeLuca, and Melina Fox", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CP", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-07-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1121, "finishing_reactions": 0, "genome_length": 57599, "gcpercent": "65.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 93, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KingstonB.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-02-09T07:35:23-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingSufyan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "L. Jaclyn, B. Hannah, A. Sufyan, C. Daniel", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.39116 N", "found_GPS_long": "72.524489 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in soil located under a heat pump outside the building Morrill Science Center 4N at the University of Massachusetts Amherst.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "small ~2mm in size, round with decently smooth edges", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kingsufyan_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/kingsufyan_empic_thumb.png", "dnam_file": null, "date_added": "2023-04-12T10:55:56-04:00", "date_modified": "2024-10-03T12:08:15-04:00" }, { "phage_name": "Kingsushi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named it after my cat, Sushi.", "finder_name": "Melia Mirdha", "found_city": "Old Westbury", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "40.79748 N", "found_GPS_long": "73.572591 E", "found_year": 2022, "p_institution": { "institution_code": "SUOW", "institution_name": "SUNY Old Westbury", "institution_logo": "https://phagesdb.org/media/institutions/SUNYOldWestbury.png", "institution_url": "https://www.oldwestbury.edu/", "institution_city": "Old Westbury", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.782786", "institution_longitude": "-73.57952" }, "enriched_sample": true, "discovery_notes": "The sample was taken from a Garden from SUNY Old Westbury South of the Natural Science Building. The soil and topsoil around the plants were collected.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology is circular, and the edges of the plaques are blurred. The size of one of my plaques was .3 mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kingsushi_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-29T15:20:19-05:00", "date_modified": "2024-02-25T15:28:04-05:00" }, { "phage_name": "KingSwamy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "In honor of retiring chancellor Subbaswamy from UMass Amherst", "finder_name": "Mara Beck", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.38922 N", "found_GPS_long": "72.52344 W", "found_year": 2022, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Frank dining hall is located on the UMass Amherst campus in the compost area.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KingSwamy_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-10-25T08:11:15-04:00", "date_modified": "2024-09-16T14:12:40-04:00" }, { "phage_name": "KingTchalla", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of my phage came from a popular fantasy African King. Who made a difference for his people.", "finder_name": "Bryan La Beau", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.2117 N", "found_GPS_long": "97.1489 W", "found_year": 2018, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "My soil was collected from campus. It was 39 degrees Fahrenheit. The soil was moist, and it was rainy and cold outside. It was 9:22 am on 10/15/18.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque was 1mm in size\r\nComet Shapes \r\n1pltiter: 1.8x10^7\r\nHtl titer:2.0x10^8", "lysogeny_notes": "Believe it was lytic because clear plaques,however, lysogeny was not tested.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingTchalla_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KingTchalla_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingTchalla_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KingTchalla_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-06T09:31:29-05:00", "date_modified": "2020-09-17T14:09:40-04:00" }, { "phage_name": "KingTheo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Chioma Madu", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.921667 N", "found_GPS_long": "77.019167 W", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-01T19:57:20-04:00", "date_modified": "2020-09-17T14:08:21-04:00" }, { "phage_name": "KingTut", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lauren Filippidis and Erin Kuisti", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "40.045 N", "found_GPS_long": "83.027 W", "found_year": 2015, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Small, turbid", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-02-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4981, "finishing_reactions": 0, "genome_length": 64827, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KingTut_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-05-31T12:29:47-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KingTut_flat.txt", "qced_genbank_file_date": "2018-05-31T12:29:47-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH450122", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KingTut_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KingTut.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KingTut_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-12-04T13:54:18-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KingVeVeVe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Myles Killpatrick", "found_city": "Canyon Country", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.430791 N", "found_GPS_long": "118.471091 W", "found_year": 2011, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": true, "discovery_notes": "Soft soil in desert area next to runoff from recent rains. About a foot beneath soil, around ninety degrees when sampled.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Clear small sized plaques, sometimes with turbid halos. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2012-03-27", "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": 68043, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 100, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KJ538723", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KingVeveve_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KingVeVeVe.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KingVeveve_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-21T05:36:42-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kinisolur", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lopez, Maduka, Rodriguez, Laguerre", "found_city": "Pompton Lakes", "found_state": "NJ", "found_country": "Unites States", "found_GPS_lat": "41.0054 N", "found_GPS_long": "74.2907 W", "found_year": 2020, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-23T09:42:31-05:00", "date_modified": "2021-05-25T13:14:23-04:00" }, { "phage_name": "Kinjaba", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kin is an abbreviation for kinesiology as the contributing members are all students in that major and jaba is each of the contributing member's first initials.", "finder_name": "B Fabry, J Green, A Meadows, A Adhav", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.39098 N", "found_GPS_long": "72.52656 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The phage was collected from a grassy field beside the Student Union at Umass Amherst, during slightly damp conditions.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque size ranges from 0.5mm to 2 mm. They are mostly clear with fuzzy edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kinjaba_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/kinjaba_empic_thumb.jpg", "dnam_file": null, "date_added": "2023-10-26T10:35:09-04:00", "date_modified": "2024-08-08T11:26:18-04:00" }, { "phage_name": "Kinkajou", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the Belizian procyonidae.", "finder_name": "CK, IM, DN, EA", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.392078 N", "found_GPS_long": "72.519172 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found outside Orchard Hill dormitories at Umass-Amherst.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1-2mm, clear, yellow edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T10:03:30-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "Kinky", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Khoza Zodwa", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.820093 S", "found_GPS_long": "30.946598 E", "found_year": 2012, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Kinky was found in a small shrub at Mainhall just as you enter the Westville campus. It was found in about 5 cm below the soil which was dark and moist.\r\n ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small round plaques which were clear", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-07-20T06:17:59-04:00", "date_modified": "2017-09-24T10:41:41-04:00" }, { "phage_name": "Kinmap", "old_names": "", "program": null, "naming_notes": "", "finder_name": "Yu-Jen Wang", "found_city": "Hualien", "found_state": "", "found_country": "Taiwan", "found_GPS_lat": "23.971389 N", "found_GPS_long": "121.609722 E", "found_year": 2022, "p_institution": { "institution_code": "SINI", "institution_name": "Academia Sinica", "institution_logo": "https://phagesdb.org/media/institutions/Academia_Sinica.png", "institution_url": "https://www.sinica.edu.tw/en", "institution_city": "Taipei", "institution_state": "", "institution_country": "Taiwan", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A21" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-06-26", "seq_facility": { "short_name": "BRCTaiwan", "facility_name": "Biodiversity Research Center at Academia Sinica, Taiwan", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 620, "finishing_reactions": 0, "genome_length": 52689, "gcpercent": "64.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 104, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kinmap.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-24T11:06:01-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kinni1032", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It was collected by the Kinnickinnick River and our favorite numbers are 10 and 32.", "finder_name": "Ellie Schommer & Hannah Brager", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.854745 N", "found_GPS_long": "92.634459 W", "found_year": 2016, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Found by a waterfall. It was 77 degrees Fahrenheit. Moist dirt. Soil Depth was 30 mm. Used a sterile stick to scoop up dirt. Its a AK cluster according to PCR", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaque sizes varied from .5 to 1.5 mm. Spots were clear and edged were distinct.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kinni1032_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kinni1032_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kinni1032_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kinni1032_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-21T14:07:16-05:00", "date_modified": "2020-09-17T14:07:26-04:00" }, { "phage_name": "Kinnick", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This was named after the Iowa Hawkeyes football stadium.", "finder_name": "Jordyn Kramer", "found_city": "Orange City", "found_state": "IA", "found_country": "United States", "found_GPS_lat": "42.99 N", "found_GPS_long": "96.05 W", "found_year": 2021, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": null, "discovery_notes": "The soil where this was found was moist and was in a wooded area. The soil was collected at 1-2 inches of depth.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kinnick_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-15T11:50:33-05:00", "date_modified": "2022-03-16T11:02:01-04:00" }, { "phage_name": "Kinny", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kinny was named after my home away from home Camp Kintail, where I have worked for numerous summers and where I was when \r\nI found out that I got into my dream university program.", "finder_name": "Amber Morton", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.402111 N", "found_GPS_long": "75.649388 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Kinny was discovered under a bush on the Roger Guindon Campus of the University of Ottawa.", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "AU", "temperate": false }, "psubcluster": { "subcluster": "AU6" }, "morphotype": "SIPHO", "plaque_notes": "Round plaques with clear centres surrounded by a turbid ring.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2815, "finishing_reactions": 0, "genome_length": 56422, "gcpercent": "51.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGCCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kinny_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kinny_Minimal_Final_xx0MnSO.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kinny_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kinny_CoverSheet.docx", "submitted_annotation_date": "2025-05-20T12:46:33-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kinny_flat.txt", "qced_genbank_file_date": "2025-05-20T12:46:33-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV915870", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kinny_Plaque_yd2Jd9b.png", "em_file": "https://phagesdb.org/media/emPics/Kinny_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kinny_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kinny.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-10T10:03:12-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kinoe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Kinoe\" is a Japanese word for \"First place\" or \"the hard shell of animals (such as turtle).\" It is also the name of my favourite Japanese Drum club's name.", "finder_name": "Kangxin Wang", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "Pittsburgh", "found_GPS_lat": "40.43878 N", "found_GPS_long": "79.953438 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil was dry and crumbly.\r\nThe area where I extracted the soil was in direct sunlight with no shade nearby.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque is lytic. The diameter of my phage is around 2-3mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kinoe_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kinoe_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kinoe_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kinoe_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-13T00:05:15-05:00", "date_modified": "2020-09-17T14:12:00-04:00" }, { "phage_name": "KinQueens", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "KinQueens was chosen because although we were put in a random group, we are ironically all Kinesiology majors. Additionally, we are all Queens.", "finder_name": "O. Mathews, E. Hubacz, S. Broglio, E. Schell", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.37134 N", "found_GPS_long": "72.53182 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The phage was adopted from our colleagues in group 02-03. The soil here was muddy and slightly wet.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque is about 1 mm in diameter, has circular edges, a dark color, and are pretty faint.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kinqueens_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/kinqueens_empic_thumb.jpg", "dnam_file": null, "date_added": "2023-10-24T09:01:10-04:00", "date_modified": "2024-07-29T10:51:46-04:00" }, { "phage_name": "Kinrose", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was compiled by combining the last names of Edward and Joseph.", "finder_name": "Joseph Ambrose & Edward Lipkin ", "found_city": "West Orange ", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.86152 N", "found_GPS_long": "74.198 W", "found_year": 2014, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "Soil was obtained from in front of Science Hall on Montclair State University campus. Temperature was approximately 75 degrees and moist", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kinrose_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kinrose_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-03T11:37:17-05:00", "date_modified": "2020-09-17T14:05:46-04:00" }, { "phage_name": "Kinsman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Kinsman comes from a neighborhood in Cleveland, Ohio, where e mother of the phage's discoverer", "finder_name": "Aaron Patterson", "found_city": "Washington D.C.", "found_state": "DC", "found_country": "United States of America", "found_GPS_lat": "38.921944 N", "found_GPS_long": "77.017778 W", "found_year": 2019, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "Found on 9/4/19. Soil was wet, clay like, dark brown, grey, and yellowish color. Found at 10 cm depth.", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-09-18T10:55:56-04:00", "date_modified": "2020-09-17T14:11:04-04:00" }, { "phage_name": "Kintaro", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it after a Japanese folklore character and used a play on words where the 'kin' part of the name means bacteria in Japanese. The name has no relation to the appearance of the phage.", "finder_name": "Yuya Fujita", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.879444 N", "found_GPS_long": "117.243056 E", "found_year": 2015, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The titer of the final phage lysate was 1x(10^10)PFU/mL.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "platensis", "strain_name": "MJ1A1", "strain_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kintaro_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kintaro_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kintaro_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-02-02T15:15:34-05:00", "date_modified": "2020-07-29T15:47:02-04:00" }, { "phage_name": "Kintsugi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage is the Japanese word \"kintsugi.\" It carries personal meaning, but also metaphorically looks for beauty where there is failure.", "finder_name": "Daniel Goodman", "found_city": "Easton", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.69685 N", "found_GPS_long": "75.21045 W", "found_year": 2016, "p_institution": { "institution_code": "LAFA", "institution_name": "Lafayette College", "institution_logo": "https://phagesdb.org/media/institutions/Lafayette.png", "institution_url": "http://www.lafayette.edu/", "institution_city": "Easton", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "40.698482", "institution_longitude": "-75.20955" }, "enriched_sample": true, "discovery_notes": "The sample was collected outside of a residence hall/dining hall on campus. The soil conditions were damp and clumpy, and the soil was taken from a shady area under a tree.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques of this phage are roughly 2 mm in diameter, are clear, and have smooth margins.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kintsugi_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Kintsugi_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kintsugi_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kintsugi_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kintsugi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-29T16:59:11-05:00", "date_modified": "2020-09-17T14:07:00-04:00" }, { "phage_name": "Kinza", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Kinza because that is the name of my little sister.", "finder_name": "Rida Yousuf", "found_city": "Bolingbrook", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "41.68 N", "found_GPS_long": "88.14 W", "found_year": 2024, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "I got my soil from a park in Bolingbrook, IL. It was snowing the night before which left the soil very moist the next morning. My soil was taken right by a lot of plants and trees. I did this because I knew that there would be more phages next to living organisms, although phages are found everywhere. This location had a lot of potential for bacterial growth because of the fertilizer and compost used on the trees and plants in the park. To collect the soil I used a small shovel and went a couple inches below surface level to obtain good soil. This was done to make sure only soil was being collected with no leaves, sticks, etc. The soil collected was a dark brown almost black color.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaque Diameter: 0.8mm\r\nPlaque Radius: 0.4mm\r\n\r\nPhage Kinza produced lytic plaques with a clear edge and clear center with a diameter of 0.8mm and a radius of 0.4mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "atrocyaneus", "strain_name": "NRRL B-2883", "strain_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kinza_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kinza_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-18T10:08:31-04:00", "date_modified": "2025-07-11T12:34:16-04:00" }, { "phage_name": "Kip11", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "", "found_city": "St. John", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "47.222278 N", "found_GPS_long": "68.761303 E", "found_year": 2016, "p_institution": { "institution_code": "UMFK", "institution_name": "University of Maine, Fort Kent", "institution_logo": "https://phagesdb.org/media/institutions/umfk.jpg", "institution_url": "http://www.umfk.maine.edu/", "institution_city": "Fort Kent", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "47.249851", "institution_longitude": "-68.59010" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-16T22:21:27-05:00", "date_modified": "2020-09-17T14:07:56-04:00" }, { "phage_name": "Kipchoge", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after my favorite Olympic distance runner, Eliud Kipchoge.", "finder_name": "Omar Vazquez", "found_city": "Bowing Green", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "41.361783 N", "found_GPS_long": "83.673592 E", "found_year": 2019, "p_institution": { "institution_code": "BGSU", "institution_name": "Bowling Green State University", "institution_logo": "https://phagesdb.org/media/institutions/BowlingGreenStateUniversity.jpg", "institution_url": "https://www.bgsu.edu/", "institution_city": "Bowling Green", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "41.379062", "institution_longitude": "-83.63134" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-05T16:16:52-05:00", "date_modified": "2020-09-17T14:11:46-04:00" }, { "phage_name": "Kiper", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage name is my last name", "finder_name": "Kirstin Kiper", "found_city": "Bloomington", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "40.502862 N", "found_GPS_long": "88.929686 W", "found_year": 2018, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": false, "discovery_notes": "PCR test discovered my phage is likely to be an EE phage", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "plaques are usually small, about 2 mm ", "lysogeny_notes": "I could not make a lysogen with my phage, however, there may be a possible lysogen connection with Plumeria based on her testing ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiper_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kiper_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kiper_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kiper_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-08T16:06:41-04:00", "date_modified": "2020-09-17T14:09:42-04:00" }, { "phage_name": "Kipos", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is greek for garden, because I got my dirt sample from my herb garden.", "finder_name": "Josie Baldwin", "found_city": "Glenside", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.102411 N", "found_GPS_long": "75.162841 E", "found_year": 2016, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": true, "discovery_notes": "found on 06/25/16, at 8:15 pm, 75 degrees fahrenheit \r\nI found my dirt sample in my backyard herb garden, under about an inch of mulch and 5.4 cm deep\r\nthe sample was moist when I collected it, stored with a wet paper towel\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "plaques started out as clear and cut when in mass populations, but become cloudy when in less dense areas (lysogenic)\r\nabout 1mm in diameter\r\nplaques are density dependant, small and lytic looking in dense areas, big and cloudy in less dense areas\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kipos_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kipos_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kipos_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kipos_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-11-13T07:50:29-05:00", "date_modified": "2020-09-17T14:07:15-04:00" }, { "phage_name": "Kipp", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alyssa Kondash and Star Fernandez", "found_city": "Hanover", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.195604 N", "found_GPS_long": "76.725943 W", "found_year": 2021, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Collected next to lamp post near a dried up pond; Dark, semi-dry soil; Sunny weather", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "~1 mm, clear after 22 hours at 30ºC on S. mirabilis and S. scabiei on NA+", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "scabiei", "strain_name": "RL-34", "strain_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "49173", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 54, "genus": "Streptomyces", "species_name": "scabiei", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kipp_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Sec7_group6_Kipp_Thumb.png", "dnam_file": null, "date_added": "2021-11-09T14:43:49-05:00", "date_modified": "2022-03-16T11:01:38-04:00" }, { "phage_name": "Kipper", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Nicknames", "finder_name": "Natalie Cleary", "found_city": "Bismarck", "found_state": "ND", "found_country": "United States", "found_GPS_lat": "46.72 N", "found_GPS_long": "100.72 W", "found_year": 2019, "p_institution": { "institution_code": "UMRY", "institution_name": "University of Mary", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfMary.jpg", "institution_url": "http://www.umary.edu/", "institution_city": "Bismarck", "institution_state": "ND", "institution_country": "USA", "institution_latitude": "46.721954", "institution_longitude": "-100.7531" }, "enriched_sample": null, "discovery_notes": "Greg Butler Hall at the University of Mary", "isolation_temperature": 1, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kipper_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kipper_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-12-12T08:57:31-05:00", "date_modified": "2020-09-17T14:11:48-04:00" }, { "phage_name": "Kipper29", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after a character from a television show I used to watch when I was little, \"Kipper the Dog.\" The theme song was stuck in my head the day we were asked to name the phage. The \"29\" is a reference to my sister's birthday.", "finder_name": "Mary Marino", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.995556 N", "found_GPS_long": "75.236944 W", "found_year": 2018, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "The sample was collected on 9/2/18 at 2:27pm under a tree east of Mandeville Hall at Saint Joseph's University. The soil was dry but cool, and was found 3.5-4.0 cm underground. The ambient temperature was 29ºC with 67% humidity; it was sunny, and had rained two days before.", "isolation_temperature": 29, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A6" }, "morphotype": "SIPHO", "plaque_notes": "The plaques were mostly turbid and slightly cloudy, indicating a temperate phage. The average size of the plaques was between 3 mm and 5 mm in diameter after 24-48 hours in the incubator at 37ºC.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-11-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2054, "finishing_reactions": 0, "genome_length": 52009, "gcpercent": "61.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 98, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kipper29_CompleteNotes_dfQSz9Z.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kipper29_Minimal_Final_usEZNPW.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kipper29_Authors_fnrMDau.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kipper29_CoverSheet_GTk11pT.pdf", "submitted_annotation_date": "2019-05-04T17:56:21-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kipper29_final.txt", "qced_genbank_file_date": "2019-05-04T17:56:21-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK894433", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kipper29_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kipper29_EMPic.jpeg", "digest_file": "https://phagesdb.org/media/digestPics/Kipper29_Digest.pdf", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kipper29.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kipper29_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kipper29_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-04T12:27:06-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kippy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name comes from the nickname of my favorite starter pokémon Mudkip.", "finder_name": "Haley Pak", "found_city": "", "found_state": "", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Phage was adopted from a classmate.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Medium sized clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kippy_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kippy_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kippy_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-12-03T08:34:30-05:00", "date_modified": "2025-09-17T09:37:05-04:00" }, { "phage_name": "Kira", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Phage named after the character \"Kira\" from the TV show \"Death Note\".", "finder_name": "Yudhvir Bhatti", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.427778 N", "found_GPS_long": "75.687389 W", "found_year": 2021, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in a plant located outside a condominium building.", "isolation_temperature": 18, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Medium-sized, clear plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kira_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kira_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kira_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kira_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kira_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-10-18T10:15:47-04:00", "date_modified": "2025-07-31T10:34:53-04:00" }, { "phage_name": "KiraTori", "old_names": "Akira", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named in honor of the late Akira Toriyama, one of the most influential authors of the modern day.", "finder_name": "Aaron B Colon", "found_city": "Easton", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.703697 N", "found_GPS_long": "75.257249 E", "found_year": 2024, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "The following phage was found in the dead of winter with a surrounding temperature of -12C. It was very moist and wet with a dark brown color and many clumps present. The ground was frozen solid due to the recent snow. It was relatively sunny and windy, and the sample was taken approximately 7 cm into the ground.", "isolation_temperature": 14, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1-2 mm diameter; Plaques were turbid with a ring around the outside, indicating lysogeny. Does not grow much larger after extra incubation time.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KiraTori_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/KiraTori_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/KiraTori_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KiraTori_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2024-03-19T13:29:55-04:00", "date_modified": "2025-09-02T16:08:28-04:00" }, { "phage_name": "Kiraz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My cat", "finder_name": "Kaan Aydin", "found_city": "Cleveland", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "41.505278 N", "found_GPS_long": "81.604167 W", "found_year": 2024, "p_institution": { "institution_code": "CWRU", "institution_name": "Case Western Reserve University", "institution_logo": "https://phagesdb.org/media/institutions/cwru_logo_1AJYR9L.jpg", "institution_url": "https://www.case.edu/", "institution_city": "Cleveland", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "clear plaques of both small and large size", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kiraz_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-10T13:20:16-05:00", "date_modified": "2025-04-04T11:37:43-04:00" }, { "phage_name": "Kirby", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Anne Campbell", "found_city": "Fredericksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.3025 N", "found_GPS_long": "77.4734 W", "found_year": 2008, "p_institution": { "institution_code": "UMAW", "institution_name": "University of Mary Washington", "institution_logo": "https://phagesdb.org/media/institutions/MaryWashington.png", "institution_url": "http://www.umw.edu/", "institution_city": "Fredericksburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.301709", "institution_longitude": "-77.47360" }, "enriched_sample": true, "discovery_notes": "From soil, depth 4 inches, in a moist environment, wooded area.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Size: 2mm (diameter) \r\nAppearance: Turbid\r\nTime: 24 hours\r\nTemp: 37 degrees celsius \r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/kirby_plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/kirby_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/Kirby_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kirby_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/kirby_EM_thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { 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"submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-04-27T20:20:39-04:00", "date_modified": "2021-01-28T11:04:21-05:00" }, { "phage_name": "KirkSess", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "NIcholas Session", "found_city": "Atlanta", "found_state": "GA", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-26T11:16:14-05:00", "date_modified": "2025-04-04T11:37:24-04:00" }, { "phage_name": "KirlyAmang21", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "KirlyAmang21 is a mixture of both of our names and the year.", "finder_name": "Kirstyn Larson and Amanda George", "found_city": "Kenosha", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "42.67744 N", "found_GPS_long": "87.820628 W", "found_year": 2021, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": false, "discovery_notes": "In front of the Siebert Chapel on the Carthage College campus.", "isolation_temperature": 29, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "They are lytic plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-11T10:33:42-05:00", "date_modified": "2022-03-16T11:02:03-04:00" }, { "phage_name": "Kirpan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name that is chosen for the isolated bacteriophage is Kirpan. In sikhism, kirpan means sword or knife, which is apart of the five articles of faith that sikhs who are baptized must wear all the time. Sikhs are supposed to represent the characteristics of a “saint soldier” who defends all people despite their race, social level, or caste. Initially, the name was to given to attest to the structure of the phage since it contains a spike which essentially is a knife for the bacterial host. However, the name was given even more conviction after comparing the other arching goal. The goal of SEA-PHAGEs is to have students help accumulate data for phage so they can be studied and depth and used to fight bacterial infections. Both the phage and the kirpan overall goals is to protect and defend, this is the ultimate reason why the name was chosen. \r\n", "finder_name": "Novejot Singh", "found_city": "Santa Cruz", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "36.983599 N", "found_GPS_long": "122.056268 W", "found_year": 2017, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "The isolated bacteriophage, Kirpan, was characterized and found to have a large symmetrical capsid head in comparison to its long tail. At the very bottom of the tail of the phage is a spike, shown from the electron microscope images. The spike is most likely the phages mechanism to infect its host membrane. This spike positions the phage to inject its viral DNA down the tube and into the host cell. The morphology of this Kirpan can possibly affect the plaque size, depending on the mechanism of how the spike infects the bacterium. As shown in the image, the diameter of the tail is much smaller in comparison to the capsid head. Tail fibers may be present, but are not visible. There is contamination present as seen in the bottom right corner. There are also other tiny unidentified object around in the EM which may be detached spike or components of the tail. \r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A8" }, "morphotype": "SIPHO", "plaque_notes": "The plaques, throughout all of the 5 passages, consistently showed the same small size and round shape. There were not any real difficulties per say with the various passages performed. In passage #3, (not imaged) there was a patch of yellow dots that grew in a small spiral in the middle of the plates, except the negative control.\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kirpan_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kirpan_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kirpan_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kirpan_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kirpan_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-07-17T12:14:13-04:00", "date_modified": "2020-08-13T16:05:55-04:00" }, { "phage_name": "Kirt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "During the process of harvesting DNA for Kirt, I asked some of my dorm-mates for any naming suggestions. The name \"Kirt\" came up and I stuck with it. ", "finder_name": "Cynthia Vu", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.829167 N", "found_GPS_long": "41.829167 W", "found_year": 2013, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "Kirt was found in a wet soil patch near the side entrance (the one facing Alumnae Hall) to Smith-Buonanno Hall at Brown University. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "All plaques were were clear and well defined. This suggests the virus has a lytic cycle.\r\nAlso, the plaques were all uniformly shaped and were large compared to the positive control. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kirt_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kirt_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kirt_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kirt_Plaque_Thumb_Se0mDOV.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kirt_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-06T15:43:55-05:00", "date_modified": "2020-09-17T14:05:27-04:00" }, { "phage_name": "Kise112", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a combination of both lab partners' initials, and the number represents our course and lab.", "finder_name": "Katie Insinga and Schyler Edwards ", "found_city": "Montclair", "found_state": "NJ", "found_country": "", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": null, "discovery_notes": "Soil collected from semi-moist soil, about 2 inches deep, temperature approximately 74 degrees.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kise112_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kise112_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-01-21T13:09:07-05:00", "date_modified": "2024-02-25T15:27:49-05:00" }, { "phage_name": "Kishan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage's personality reminded me a lot of my cat, Kishan. They are both moody and adore eating. I would argue they both have no thoughts but love keeping you on your toes with inconsistency. Both my cat and the phage like to change size but settle with being as big and chunky as possible.", "finder_name": "Mysidia Leff", "found_city": "Oxford", "found_state": "OH", "found_country": "United States of America", "found_GPS_lat": "39.521551 N", "found_GPS_long": "84.765743 W", "found_year": 2022, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "Sample taken from decomposing material in compost.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "two plaque sizes observed in sample.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kishan_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kishan_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kishan_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-28T11:56:21-05:00", "date_modified": "2024-02-25T15:28:03-05:00" }, { "phage_name": "Kishimoto", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name was chosen from a favorite childhood series, specifically from the one of the characters of the novels. ", "finder_name": "Roshni Pattabiraman", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44566 N", "found_GPS_long": "79.96329 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The weather during the collection of soil sample was around 10 degrees Fahrenheit and the ground was frozen solid due to the recent snow. It was relatively sunny and windy, and the sample was taken approximately 7 cm into the ground. The surrounding area was free of vegetation with the exception of grass, but trees were bordering the region. The soil was hard and had many clumps, and was dark brown.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques range from about 1/2 cm in diameter to 1/10 cm in diameter. They are circular and clear. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kishimoto_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kishimoto_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kishimoto_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kishimoto_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-02-03T13:44:23-05:00", "date_modified": "2020-09-17T14:08:31-04:00" }, { "phage_name": "Kishmeesh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Bejan Rasoul", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.45 N", "found_GPS_long": "78.97 W", "found_year": 2010, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "Soil was obtained from the area where fig trees are growing. The soil was obtained on August 30 2010 around 7:00 am. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque is small and kind of unclear. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kishmeesh_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kishmeesh_Digest.doc", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kishmeesh_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2010-12-08T06:32:47-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "KiSi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My lab partner and I combined the first two letters of our last names to make the name of our phage. ", "finder_name": "Monica Kinder & Elisabeth Sitio", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667074 N", "found_GPS_long": "117.402995 W", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Soil sample was collected from a puddle near the front of Hughes building at Gonzaga University in Spokane Washington. ", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques were 3mm in diameter and cloudy. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-01-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 333, "finishing_reactions": 0, "genome_length": 62558, "gcpercent": "68.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGTAGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 103, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KiSi_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-01-02T23:33:10-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KiSi_flat.txt", "qced_genbank_file_date": "2019-01-02T23:33:10-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK376955", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KiSi_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/KiSi_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/KiSi_Digest.docx", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KiSi.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KiSi_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KiSi_EMPic_Thumb.png", "dnam_file": null, "date_added": "2014-11-03T10:03:54-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kismo", "old_names": "Kismospelmanosity", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kinnari Matheson, Orrianne Morrison", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.7 N", "found_GPS_long": "84.12 W", "found_year": 2008, "p_institution": { "institution_code": "SPEL", "institution_name": "Spelman College", "institution_logo": "https://phagesdb.org/media/institutions/Spelman.gif", "institution_url": "http://www.spelman.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.745254", "institution_longitude": "-84.41397" }, "enriched_sample": true, "discovery_notes": "From soil next to a pond, a lot of sunlight but very damp. Near Arabia Mountain. Multiple phages were isolated but only worked on Kismo", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Average plaque diameter: 1-3mm\r\nPlaque appearance: Clear\r\nIncubation time: 24 hours\r\nIncubation temp: 37°C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/kizmospelmanosity_plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/kizmospelmanosity__digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kizmospelmanosity_plaque_thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-22T12:31:44-04:00" }, { "phage_name": "Kispert", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We decided to name our phage after an awesome basketball player who is a freshman at our school.", "finder_name": "Claire and Kenzie", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.67 N", "found_GPS_long": "117.4 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We found this phage in front of our biology building lawn and we took it from soil. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our phage has spots that are around 2mm in diameter and are clear. They do vary in size some but not a significant amount. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kispert_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kispert_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-12T21:04:55-05:00", "date_modified": "2020-09-17T14:09:02-04:00" }, { "phage_name": "Kiszka", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named for the next legends in rock and roll and/or the Polish sausage.", "finder_name": "Bailey Hill", "found_city": "Blacksburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.226 N", "found_GPS_long": "80.416 W", "found_year": 2019, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Soil sample taken from a relatively suburban area on campus with a decent amount of foot traffic, located beside a fraternity house and a supposed skunk nest.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were polymorphic but generally very small and turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiszka_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kiszka_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kiszka_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kiszka_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kiszka_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2019-11-11T18:23:10-05:00", "date_modified": "2020-09-17T14:11:14-04:00" }, { "phage_name": "Kita", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named in honor of my cat, Nikita.", "finder_name": "Emily Pembridge", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443395 N", "found_GPS_long": "79.954345 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 23, "growth_notes": "", "pcluster": { "cluster": "CZ", "temperate": true }, "psubcluster": { "subcluster": "CZ1" }, "morphotype": "SIPHO", "plaque_notes": "Plaques ranging from 2-4 mm in length. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 827, "finishing_reactions": 0, "genome_length": 50346, "gcpercent": "66.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCTGGGGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 80, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU963257", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kita_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kita_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kita_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kita.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kita_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kita_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Kita_gb.dnam5", "date_added": "2015-10-08T05:47:45-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kitalpha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "In a desire to name our phage after a star, we searched for star names that started with \"K\" (first of initial of us, the founders). Kitalpha translates to \"part of a horse\" and our school's mascot is a mustang, making the name a perfect fit.", "finder_name": "Kennedy Barrow and Krystal Yackulak", "found_city": "Sykesville", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.402711 N", "found_GPS_long": "77.010798 W", "found_year": 2024, "p_institution": { "institution_code": "STEV", "institution_name": "Stevenson University", "institution_logo": "https://phagesdb.org/media/institutions/Stevenson_University_logo.png", "institution_url": "https://www.stevenson.edu/", "institution_city": "Owings Mills", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "State of soil: solid\r\nType of soil: clay/soil mix, dry, clumpy\r\nLocation: Sykesville, MD\r\nSpecific Location: patch of grass under road sign off of Patrick Dr\r\nDepth of soil collection: 2 inches\r\nOutside Temp during collection: 73 degrees Fahrenheit", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small Plaques (< 1mm)\r\nClear with faint halo", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kitalpha_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kitalpha_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/thumbnail_try_2.png", "em_thumb_file": "https://phagesdb.org/media/emPics/trying_em.png", "dnam_file": null, "date_added": "2024-10-11T11:42:23-04:00", "date_modified": "2025-04-04T11:37:32-04:00" }, { "phage_name": "KitaToby", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named the Phage by combining our nicknames.", "finder_name": "Nikita Gassan and Tobias LaFountain", "found_city": "Athens", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "42.309325 N", "found_GPS_long": "73.820905 W", "found_year": 2023, "p_institution": { "institution_code": "ACPS", "institution_name": "Albany College of Pharmacy and Health Sciences", "institution_logo": "https://phagesdb.org/media/institutions/apchsnav_logo.png", "institution_url": "https://www.acphs.edu/", "institution_city": "Albany", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The sample was wet when collected. It was collected from under a bird feeder and near a pond.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were small, smooth, and round.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KitaToby_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KitaToby_EMPic_XHOo0WX.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KitaToby_PlaquesPic.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KitaToby_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-11-13T12:13:54-05:00", "date_modified": "2024-02-25T15:28:21-05:00" }, { "phage_name": "KitaX", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "KitaX was named after all the individuals in our group(Kristina Engelbrecht, Isabelle Giglio, Toni Lamparski, Alex Jin)", "finder_name": "Kristina, Toni , Isabelle, Alex", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.389265 N", "found_GPS_long": "72.524652 W", "found_year": 2022, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "KitaX was collected on February 9th of 2022 near the front entrance of the Morrill Science III building( 42.3892648 N, 72.5246515 W.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "KitaX generally presents as 1mm in diameter circular black dots with a halo present", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KitaX_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KitaX_EMpic_thumb.jpg", "dnam_file": null, "date_added": "2022-04-06T23:35:57-04:00", "date_modified": "2024-09-16T14:12:35-04:00" }, { "phage_name": "KitCat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name originates from deceased house cat. ", "finder_name": "Kyle McCurdy", "found_city": "West Chester", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.376892 N", "found_GPS_long": "84.39565 W", "found_year": 2011, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Very diverse, ranging from very large, clear and circular to narrow and opaque. ", "lysogeny_notes": "Non-lysogenic", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KitCat_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/KitCat_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KitCat_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-10-27T06:32:43-04:00", "date_modified": "2020-06-30T16:35:55-04:00" }, { "phage_name": "Kitchens", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": " I named the phage Kitchens simply because Cydne was the initial discoverer of the phage. ", "finder_name": "Amanda Staples", "found_city": "Bowling Green", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "37.008335 N", "found_GPS_long": "86.376597 W", "found_year": 2016, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "Soil sample was acquired from the side of Hennessy Road next to the Fruit of the Loom plant. Local temperature was 75F. Soil was less than 1\" deep from the surface, dry and compact. Pieces of grass were still attached to the soil. \r\n**Amanda Staples continued processing of sample after Cydne discontinued work Sept - Dec 2016. Cydne processed the enrichment and plated. Mar 2017, sample was plated and plaque plugged to purify.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were clear but still difficult to see because of the graininess of Gordonia lawns. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kitchens_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kitchens_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kitchens_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-04-03T11:49:13-04:00", "date_modified": "2020-09-17T14:08:18-04:00" }, { "phage_name": "Kitchy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kripa Vemula", "found_city": "St louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.55015 N", "found_GPS_long": "90.53989 W", "found_year": 2025, "p_institution": { "institution_code": "STLC", "institution_name": "St. Louis Community College", "institution_logo": "https://phagesdb.org/media/institutions/StLouisCommunityCollege.png", "institution_url": "https://www.stlcc.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.629046", "institution_longitude": "-90.27866" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kitchy_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-21T20:38:32-04:00", "date_modified": "2025-04-22T14:06:07-04:00" }, { "phage_name": "Kite", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Olivia Kanahan", "found_city": "Tampa", "found_state": "FL", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": false, "discovery_notes": "Found in damp, dark soil. It was sunny out with 56% humidity. Soil obtained approximately half an inch below the surface of the soil.", "isolation_temperature": 33, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are lytic and both small and big plaques are presented. Plaques are round for the most part and equally spaced.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kite_EMPic.docx", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-17T22:06:13-04:00", "date_modified": "2021-04-06T14:55:51-04:00" }, { "phage_name": "Kithara", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the Greek instrument played by professional musicians in Ancient Greece, and depicted as one of the instruments played by the mythological sirens.", "finder_name": "Elizabeth Amarh", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.44872 N", "found_GPS_long": "79.95611 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Discovered Summer 2024 by Serena Slatas from a purple flower during PHIRE. Isolated by Serena and worked up by Elizabeth Amarh.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "Singleton", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-10-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4821, "finishing_reactions": 0, "genome_length": 63447, "gcpercent": "69.1", "end_type": "TREP", "repeat_length": 337, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 99, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kithara_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-01-10T11:13:54-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kithara.gbf", "qced_genbank_file_date": "2025-01-10T11:13:54-05:00", "isolation_host": { "genus": "Curtobacterium", "species": "flaccumfaciens", "strain_name": "NRRL B-59340", "strain_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ868964", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kithara_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kithara.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kithara_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-02T14:37:28-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kitkat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katherine DeRuff ", "found_city": "Ross", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "37.9625 N", "found_GPS_long": "122.5550 W", "found_year": 2013, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "AT", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 878, "finishing_reactions": 5, "genome_length": 58560, "gcpercent": "63.4", "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "This phage has a bizarre coverage pattern. Over 95% of the reads align to one strand (the reverse strand as the final sequence is reported) and only a smattering of reads align to the other. This is highly unusual, and as of Jan 2016 has only been seen in the other Cluster AT phage, Ezio.\r\n\r\nCare was taken to ensure that this was not a bioinformatic artifact, and this genome was actually sequenced by Illumina in two different sequencing centers, each time yielding the same coverage pattern.", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 100, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU647627", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kitkat_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kitkat.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kitkat_EMPic_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Kitkat.dnam5", "date_added": "2013-10-25T10:30:16-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "KitKats", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Vaishnavi Mahalingam", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.4443 N", "found_GPS_long": "79.9532 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large, clear plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "Upon sequencing, this phage's genome was found to be 100% identical to that of phage Smarties. Though of course real KitKats and Smarties are very different.", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KitKats_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KitKats_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/kitkats_EM.jpg", "dnam_file": null, "date_added": "2019-03-01T12:53:14-05:00", "date_modified": "2021-08-19T13:35:30-04:00" }, { "phage_name": "Kito", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is my girlfriends dogs name and she told me to do this.", "finder_name": "Alvaro Pascual", "found_city": "Lincoln", "found_state": "NE", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-02-22T14:38:01-05:00", "date_modified": "2025-07-11T12:34:12-04:00" }, { "phage_name": "Kitsune", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kitsune is the term for fox in Japanese. ", "finder_name": "Brianna Tollackson", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.730019 N", "found_GPS_long": "117.165442 W", "found_year": 2013, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": true, "discovery_notes": "This soil sample was taken from hard, dry, root-filled soil. It was collected from approximately 3 centimeters below the surface. the temperature at the time of collection was around 30 degrees Celsius. The sample was taken from beneath a tree behind Abelson Hall on the Washington State University campus.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are turbid but fairly clear considering their turbidity. They are nearly perfectly circular and vary in size from 1 mm to 2.5 mm. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kitsune_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kitsune_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kitsune_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kitsune_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-11-14T12:39:54-05:00", "date_modified": "2020-09-17T14:05:26-04:00" }, { "phage_name": "Kitten", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katalina Rodriguez and Purba Yusuf", "found_city": "Evansville", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "37.972251 N", "found_GPS_long": "87.532698 E", "found_year": 2018, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kitten_Plaque.TIF", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kitten_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-12-03T21:20:40-05:00", "date_modified": "2020-09-17T14:10:02-04:00" }, { "phage_name": "KittenMittens", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from an episode of \"It's Always Sunny in Philadelphia.\"", "finder_name": "Kristofer Miller", "found_city": "Hampden Sydney", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.243500 N", "found_GPS_long": "78.454000 W", "found_year": 2012, "p_institution": { "institution_code": "HMSD", "institution_name": "Hampden-Sydney College", "institution_logo": "https://phagesdb.org/media/institutions/hsc_seal.jpg", "institution_url": "http://www.hsc.edu/", "institution_city": "Hampden-Sydney", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.241291", "institution_longitude": "-78.46095" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken from an area beside the Lagoon Athletic Fields on the campus of Hampden-Sydney College.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A10" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-12-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 560, "finishing_reactions": 0, "genome_length": 49894, "gcpercent": "64.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGGTAA", "sequencing_notes": "This phage has a polymorphism at position 22909. The consensus at this position is a C, but 40% of the reads had a T in this position.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 78, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KittenMittens_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KittenMittens_Minimal_Final_rFloHuu.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KittenMittens_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KittenMittens_CoverSheet.pdf", "submitted_annotation_date": "2018-02-24T01:40:41-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KittenMittens.gbf", "qced_genbank_file_date": "2018-02-24T01:40:41-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MH001459", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KittenMittens_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KittenMittens_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KittenMittens.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KittenMittens_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/KittenMittens_EMPic_Thumbs.png", "dnam_file": "https://phagesdb.org/media/dnam/KittenMittens.dnam5", "date_added": "2012-10-15T08:52:55-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kittens2", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kittens are small and hard to catch, so are phage. The number 2 because it is one more than 1. ", "finder_name": "Matthew Cheifetz", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.446789 N", "found_GPS_long": "79.953814 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil was clumpy and moist. There was grass growing in the soil, and it was taken from next to a sidewalk.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Kittens2 displays both large and small plaques. Although this tends to mean that two phage are present, testing was done to ensure that it is in fact just one phage. Kittens2 has plaques that range in size from 1-2mm. The plaques are clear and circular. Kittens2, based off of the amount of trouble amplifying its presence, is very difficult to work with. This may suggest a small burst size. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kittens2_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kittens2_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-10-13T15:12:35-04:00", "date_modified": "2020-09-17T14:07:43-04:00" }, { "phage_name": "KittenWhiskers", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"KittenWhiskers\" comes from a nickname for a friend.", "finder_name": "Lauren Gilman & Kelsey Moore", "found_city": "Portland", "found_state": "OR", "found_country": "United States", "found_GPS_lat": "45.540207 N", "found_GPS_long": "122.804661 W", "found_year": 2025, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil sample was taken from a garden in Portland Oregon. The weather was cold and dry. The soil sample had lots of fertilizer in it.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "KittenWhiskers' plaques are round with cloudy edges. In addition, the plaques are turbid with an average diameter of 0.36 mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KittenWhiskers_Plaque_l1n6q7K.png", "em_file": "https://phagesdb.org/media/emPics/KittenWhiskers_EMPic_ZqaRdLE.png", "digest_file": "https://phagesdb.org/media/digestPics/KittenWhiskers_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Screenshot_2025-04-27_at_7.53.30PM.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Screenshot_2025-04-27_at_8.06.14PM.png", "dnam_file": null, "date_added": "2025-02-18T16:04:43-05:00", "date_modified": "2025-04-30T11:22:00-04:00" }, { "phage_name": "Kittle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Wendy Cecil", "found_city": "Winnemucca", "found_state": "NV", "found_country": "United States", "found_GPS_lat": "40.962222 N", "found_GPS_long": "117.7075 W", "found_year": 2020, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "SM buffer was used when purifying this phage.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were consistently turbid and approximately 0.75-1.5 mm in diameter. When this phage was isolated, the plaques were uniform for about two weeks. After this time, plaque morphology suddenly diversified in diameter and turbidity variation.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kittle_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kittle_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Kittle_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kittle_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kittle_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-09-25T09:36:19-04:00", "date_modified": "2021-01-28T11:04:15-05:00" }, { "phage_name": "KittPond", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Dirt sample came from the side of a pond on CU Boulder campus called Kittridge Pond. Hence KittPond.", "finder_name": "Emmy Ostrander + Aidan Palermo", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.00944 N", "found_GPS_long": "105.2749 W", "found_year": 2024, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Found in dirt next to a pond. 12:25 PM 1/29/24.", "isolation_temperature": 14, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Lytic phage. Phage head with a long tail", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KittPond_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KittPond_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-24T09:17:24-04:00", "date_modified": "2025-04-04T11:37:41-04:00" }, { "phage_name": "Kitty", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alexis Esquivel, Ehab Barnawi", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.729861 N", "found_GPS_long": "117.165528 W", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-26T02:36:55-04:00", "date_modified": "2019-04-26T02:36:55-04:00" }, { "phage_name": "KittyBitty", "old_names": "", "program": null, "naming_notes": "I named this phage KittyBitty as it is a nickname I have for my brother.", "finder_name": "Ash Olivet", "found_city": "Rock Hill", "found_state": "SC", "found_country": "United States", "found_GPS_lat": "34.9 N", "found_GPS_long": "81.0327 W", "found_year": 2024, "p_institution": { "institution_code": "WNTH", "institution_name": "Winthrop University", "institution_logo": "https://phagesdb.org/media/institutions/WinthropUniversity.jpg", "institution_url": "http://www.winthrop.edu/", "institution_city": "Rock Hill", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "34.939523", "institution_longitude": "-81.03154" }, "enriched_sample": true, 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"smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KittyBitty_Plaque_o07pNIY.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/KittyBitty_Digest_KMN9BvV.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Screenshot_2024-11-21_at_2.18.45PM.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-08T08:52:34-05:00", "date_modified": "2025-04-04T11:37:22-04:00" }, { "phage_name": "Kittykat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katherine Baez", "found_city": "Haledon", "found_state": "NJ", "found_country": "United States", "found_GPS_lat": "40.864114 N", "found_GPS_long": "74.199418 W", "found_year": 2019, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 28, "growth_notes": "", "pcluster": { "cluster": "AK", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-24", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 587, "finishing_reactions": 0, "genome_length": 43603, "gcpercent": "60.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "GGTAACCGTGATA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 65, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kittykat_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kittykat_Minimal_Final_V8uXHTL.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kittykat_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kittykat_CoverSheet.pdf", "submitted_annotation_date": "2020-11-23T12:21:25-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kittykat.gbf", "qced_genbank_file_date": "2020-11-23T12:21:25-05:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MW314848", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kittykat_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kittykat.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kittykat_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-11-26T13:20:20-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Kiwa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Based on the last names of the researchers", "finder_name": "Stella Wadnizak and Paulina King", "found_city": "Portland", "found_state": "OR", "found_country": "USA", "found_GPS_lat": "45.50538 N", "found_GPS_long": "122.63441 W", "found_year": 2025, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Found in a backyard garden in Portland, Oregon.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Most of the plaques found were around 2-3 mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiwa_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kiwa_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kiwa_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KIWA2_2_copy.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/3E4CD54F-BFA3-4CB0-ABBC-2ED994CA4D7D_copy.jpg", "dnam_file": null, "date_added": "2025-02-25T11:21:53-05:00", "date_modified": "2025-05-07T13:25:55-04:00" }, { "phage_name": "Kiwanis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Kiwanis because Kiwanis is the name of a park that is located in my neighborhood. Kiwanis park is very special to me because it is the spot where I have met some of my closest friends when I was younger that still am very close with today. Kiwanis park is also one of my favorite locations to study at when I was in high school.", "finder_name": "Matthew Crosse", "found_city": "Bloomington", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "40.493788 N", "found_GPS_long": "88.981206 W", "found_year": 2018, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": true, "discovery_notes": "I collected this soil sample 10 feet from a man made creek in Bloomington, Illinois. The ambient temperature outside was 70°F. The soil was extremely soft and dry. I collected the soil sample on 9/6/2018.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiwanis_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kiwanis_EMPic_5xvxwOU.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kiwanis_Digest.jpg", "vdigest_file": "https://phagesdb.org/media/vDigestPics/Kiwanis_VirtualDigest.jpg", "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kiwanis_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-08T15:47:44-04:00", "date_modified": "2020-09-17T14:09:42-04:00" }, { "phage_name": "Kiwi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My cat of about 16 years is named Kiwi. Her name resulted from her small size as a kitten; when curled up she resembled a kiwi fruit. Perhaps this mycobacteriophage will prove similarly small relative to its peers! (Update: It didn't.)", "finder_name": "Andrew Puglionesi", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443103 N", "found_GPS_long": "79.962605 W", "found_year": 2014, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "This phage was isolated on M. smegmatis stlr02. It hails from the grounds of the University of Pittsburgh's Sutherland Hall and was found in moist, mulch-like soil that contained many bugs. The soil was also cold and very dark brown. A layer of wood chips was above it, and the general area had many coniferous trees.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "This phage forms clear plaques that vary in size. Some are small, and some fairly large. This trend was seen throughout at least four rounds of purification.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiwi_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kiwi_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kiwi_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kiwi_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kiwi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-11-08T17:01:43-05:00", "date_modified": "2020-07-27T15:35:02-04:00" }, { "phage_name": "Kiwibot", "old_names": "FOH 2", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "At the University of Maine, Honors College, we have automated robots that deliver food to dorms called Kiwibots. We chose this name because phage deliver its DNA to the bacteria or host.", "finder_name": "Madison Morneau, Jeannine Beever", "found_city": "Brewer", "found_state": "ME", "found_country": "United States of America", "found_GPS_lat": "44.788211 N", "found_GPS_long": "68.728291 W", "found_year": 2023, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kiwibot_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kiwibot_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-09T10:04:12-04:00", "date_modified": "2024-02-25T15:28:35-05:00" }, { "phage_name": "KKizew", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "First K represents the fist \"K\" of my name and the \"Kizew\" part comes from the first 5 letters of my last name. Pronounced \"Kay-kizoo.\"", "finder_name": "Kristina Kizewski", "found_city": "Colorado Springs", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "38.989415 N", "found_GPS_long": "104.592377 W", "found_year": 2022, "p_institution": { "institution_code": "CSUP", "institution_name": "Colorado State University-Pueblo", "institution_logo": "https://phagesdb.org/media/institutions/ColorStaPueblo.jpg", "institution_url": "", "institution_city": "Pueblo", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Garden of my best friend. Midday. Dug in less than an inch with a spoon.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-30T09:53:23-05:00", "date_modified": "2022-11-30T09:53:23-05:00" }, { "phage_name": "Klam", "old_names": "Feabe", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Mackenzy J,Lia S, Kaila J, Aleksa J", "found_city": "Kenosha ", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-08T15:49:15-05:00", "date_modified": "2020-09-17T14:09:12-04:00" }, { "phage_name": "Klandrade", "old_names": "TheKLAW", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of our phage came from the initials of both Lauren and Katie (the phage discoverer's).\r\nKatie Lauren Aguirre Wagner (KLAW). We added the \"The\" at the beginning from the Toy Story scene with the salients saying \"THE CLAWWWWW\" as well.", "finder_name": "Lauren Wegner, Katie Aguirre", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.668056 N", "found_GPS_long": "117.403889 W", "found_year": 2020, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We gathered our sample on a snowy day near the dense soil from grass between St. Al's church and the Grotto for prayer. The snow hardened the soil and made it difficult to gather a sample with ease. (Especially with a plastic spoon!) It was in January, which is a cold winter in Spokane with a temperature about 28 F", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Plaques were clear and medium/large in size in nearly perfectly round shapes.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-05-10T15:19:11-04:00", "date_modified": "2021-01-28T11:04:21-05:00" }, { "phage_name": "Klaroline", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Klaroline originated from a well-known television series called “The Vampire Diaries”. It is the combination of two characters’ names.", "finder_name": "Trini Nguyen & Timag Sherif", "found_city": "Baltimore", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.318516 N", "found_GPS_long": "76.769051 W", "found_year": 2022, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Our soil sample was collected on 9/14/2022 at Windsor Mills, MD around 10 am. It rained the day before so the soil was fine and damp.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "BI", "temperate": false }, "psubcluster": { "subcluster": "BI4" }, "morphotype": "MYO", "plaque_notes": "Clear circular plaques, small and isolated, ~1mm round edges after 24 hours of incubation at 30 C. The plaques also display a cloudy appearance with smooth borders.", "lysogeny_notes": "We were unable to finish the patch test for the lysogeny procedure due to scheduling errors.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Klaroline_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Klaroline_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Klaroline_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Klaroline_Plaque-Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/S5_G4_Klaroline.png", "dnam_file": null, "date_added": "2022-09-29T09:05:07-04:00", "date_modified": "2024-02-25T15:27:52-05:00" }, { "phage_name": "KLat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Its a mixture of my first and last name. I put in time and work into doing this experiment so i named it after me. ", "finder_name": "lauren Drake", "found_city": "blauvelt", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.053611 N", "found_GPS_long": "73.95246 E", "found_year": 2017, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": true, "discovery_notes": "Was found by my classmate in a near by creek by our school called Marty's creek ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plaques were very clear and i had many of them. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KLat_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KLat_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-17T22:29:39-05:00", "date_modified": "2020-09-17T14:08:40-04:00" }, { "phage_name": "Klateria", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Mixture of founders names.", "finder_name": "Kate Mauldin & Slade McLaughlin", "found_city": "Moscow", "found_state": "ID", "found_country": "USA", "found_GPS_lat": "46.72254 N", "found_GPS_long": "117.025 W", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Was extracted from wet muddy soil, thin blanket of snow approx 21 cm in depth after snow was moved. 10 mL extracted. It was very close to urban living and a place where animals frequent. The date was 1-22-19.", "isolation_temperature": 1, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Sensitive to Temperture changes when incubating. Incubation is best done at 37 degrees Celsius. Less plaque cultures will grow at lower temperatures. \r\nDoes not infect M. Terra.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "hominis", "strain_name": "NRRL B-24220", "strain_species": { "id": 46, "genus": "Microbacterium", "species_name": "hominis", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 46, "genus": "Microbacterium", "species_name": "hominis", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-26T02:57:23-04:00", "date_modified": "2019-04-26T02:57:23-04:00" }, { "phage_name": "Klatter", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Courtney Klatt", "found_city": "Elmhurst", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "YORK", "institution_name": "York Community High School", "institution_logo": "https://phagesdb.org/media/institutions/YorkCommunityHighSchool.gif", "institution_url": "http://york.elmhurst205.org/", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "Upon sequencing by Ion Torrent at the University of Pittsburgh, this phage was found to be 100% identical to Papez at the nucleotide level. Since both phages were isolated at the same institution, it appears that Klatter is a lab contaminant of Papez. ", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-01-09T07:19:00-05:00", "date_modified": "2021-10-15T14:03:29-04:00" }, { "phage_name": "Klaus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Amy Hill", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.0 N", "found_GPS_long": "79.0 W", "found_year": 2014, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A9" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Klaus_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Klaus_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Klaus_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Klaus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Klaus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-11-04T12:22:49-05:00", "date_modified": "2020-07-27T15:36:07-04:00" }, { "phage_name": "Klause", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Georgia Hoffman", "found_city": "Bowling Green", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "36.98 N", "found_GPS_long": "86.46 W", "found_year": 2017, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Klause_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Klause_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Klause_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Klause_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Klause_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-09-22T11:07:53-04:00", "date_modified": "2020-09-17T14:08:17-04:00" }, { "phage_name": "Klco", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after National History Day coach Jan Klco for all her great work.", "finder_name": "Alison Chen", "found_city": "Grand Rapids", "found_state": "MI", "found_country": "United States of America", "found_GPS_lat": "42.933396 N", "found_GPS_long": "85.583482 W", "found_year": 2022, "p_institution": { "institution_code": "CALV", "institution_name": "Calvin University", "institution_logo": "https://phagesdb.org/media/institutions/CalvinLogo.png", "institution_url": "http://www.calvin.edu/", "institution_city": "Grand Rapids", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.930074", "institution_longitude": "-85.58763" }, "enriched_sample": true, "discovery_notes": "Collected in the Calvin Ecosystem Preserve by the Bioswale, by the base of the numbered post 4. Sample was collected about 2 cm under top soil. Ambient temperature was 70 degrees Fahrenheit. Soil was sandy and mostly dry.\r\nSample was purified multiple times due to the presence of two different plaque morphologies - both of which are from the same phage.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Most are 0.5 mm in diameter with a fuzzy border. Occasionally they will be 1 mm in diameter with a clearer border. Both plaques are from the same phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "equi", "strain_name": "NRRL B-16538", "strain_species": { "id": 31, "genus": "Rhodococcus", "species_name": "equi", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus_equi" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 31, "genus": "Rhodococcus", "species_name": "equi", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus_equi" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-30T14:51:19-05:00", "date_modified": "2024-02-25T15:28:06-05:00" }, { "phage_name": "Kleardashian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sarah Deluty", "found_city": "Stirling", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.678311 N", "found_GPS_long": "74.501089 W", "found_year": 2014, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": true, "discovery_notes": "Found in a pile of landscaping rocks next to a wooden beam\r\nsoil was dry and loose", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are always clear and round", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kleardashian_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kleardashian_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kleardashian_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-05T21:01:52-05:00", "date_modified": "2024-02-25T15:27:49-05:00" }, { "phage_name": "Klee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the Genshin Impact character Klee. She is tiny and explosive, like bacteriophage", "finder_name": "Sriya Veeramachaneni and Emily Salisbury", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "Allegheny", "found_GPS_lat": "40.444153 N", "found_GPS_long": "79.962461 W", "found_year": 2021, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small Clear Plaques ranging .5-1mm in diameter. Fast growing Phage", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-07T15:07:29-04:00", "date_modified": "2022-03-16T11:02:25-04:00" }, { "phage_name": "Klein", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Veronica Smith", "found_city": "Radnor", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.055400 N", "found_GPS_long": "75.374100 W", "found_year": 2011, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": null, "discovery_notes": "found 1 inch deep in damp soil", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "J", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "0.3cm plaques grew after 48 hours at 37°C", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-12-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1897, "finishing_reactions": 0, "genome_length": 112329, "gcpercent": "60.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "ATCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 248, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Klein_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Klein_Minimal_Final_PDacbFG.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Klein_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Klein_CoverSheet.docx", "submitted_annotation_date": "2017-08-16T12:44:30-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Klein_flat_2AFfiEX.txt", "qced_genbank_file_date": "2017-08-16T16:02:03-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MF919512", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Klein_Digest.tif", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Klein.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Klein.dnam5", "date_added": "2012-02-16T07:05:52-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Klephen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a combined name from both of my favorite basketball players.", "finder_name": "Nina Duong", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444 N", "found_GPS_long": "79.957528 W", "found_year": 2019, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "I found my phage in Pittsburgh under the Thackeray Hall sign at the University of Pittsburgh", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plaque is clear and is medium size. I performed three round of plaque morphology before I was sure that I had isolated a phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Klephen_Plaque_VsfFcwB.jpeg", "em_file": "https://phagesdb.org/media/emPics/Klephen_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": 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"qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-13T16:27:43-05:00", "date_modified": "2024-02-25T15:28:15-05:00" }, { "phage_name": "Klondike", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage was inspired by its origin and the origin of its discoverer- both are from Alaska and both share characteristics based on development in the North. ", "finder_name": "Abigail Sweetman", "found_city": "Ketchikan ", "found_state": "AK", "found_country": "USA", "found_GPS_lat": "55.79 N", "found_GPS_long": "131.45 W", "found_year": 2014, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Mostly large, uniform plaques with some scattering of smaller plaques in between. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Klondike_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Klondike_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/Klondike_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Klondike_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Klondike_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-11-17T10:00:41-05:00", "date_modified": "2024-02-25T15:27:48-05:00" }, { "phage_name": "Kloppinator", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is dedicated to an amazing biology teacher and mentor.", "finder_name": "Uriel Sanchez", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.3325 N", "found_GPS_long": "76.616672 W", "found_year": 2012, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": null, "discovery_notes": "Soil sample taken from a heavily vegetated area.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Plaques are approximately 4mm in size.\r\nBorders are clearly defined. No haziness or blurred edges.Plaques themselves are almost perfectly circular and are also clear with no blurring.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-02-06", "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 110, "finishing_reactions": 6, "genome_length": 68480, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kloppinator_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kloppinator_Minimal_Final_C4n6Zv1.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kloppinator_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kloppinator_CoverSheet.pdf", "submitted_annotation_date": "2019-09-27T14:09:13-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kloppinator_flat.txt", "qced_genbank_file_date": "2019-09-27T14:09:13-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MN585967", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kloppinator_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kloppinator_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kloppinator.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kloppinator_Plaque_Thumbs_2.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kloppinator_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-12-06T22:00:12-05:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Klourd", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ian Plourd and Ellis Klick", "found_city": "Unity", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "44.587339 N", "found_GPS_long": "69.28988 W", "found_year": 2023, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": false, "discovery_notes": "Isolated from soil at the Common Ground fair in Unity, Maine", "isolation_temperature": 16, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "approximately 1-3mm size plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Klourd_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Klourd_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-09T10:38:09-04:00", "date_modified": "2024-02-25T15:28:35-05:00" }, { "phage_name": "KLucky39", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kyler Haskell", "found_city": "Provo", "found_state": "UT", "found_country": "USA", "found_GPS_lat": "40.2464 N", "found_GPS_long": "111.648822 W", "found_year": 2009, "p_institution": { "institution_code": "BRYO", "institution_name": "Brigham Young University", "institution_logo": "https://phagesdb.org/media/institutions/BYU_seal_copy.gif", "institution_url": "http://home.byu.edu/home/", "institution_city": "Provo", "institution_state": "UT", "institution_country": "USA", "institution_latitude": "40.252020", "institution_longitude": "-111.6492" }, "enriched_sample": true, "discovery_notes": "Date: 15 Sep 2009\r\nTemp: 24°C\r\nSite: BYU Campus by Widstoe Building\r\nSample: Topsoil <1 in., wet mulch in bark.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Plaques are small, 1mm, and lysogenic with cloudy concentric circles around the 1mm clear spot.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2011-03-17", "seq_facility": { "short_name": "JGI", "facility_name": "Joint Genomics Institute", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "Sanger", "method_name": "Sanger" }, "coverage": null, "finishing_reactions": null, "genome_length": 68138, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 100, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "JF704099", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KLucky39_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KLucky39_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/KLucky39_Digest.jpg", "vdigest_file": "https://phagesdb.org/media/vDigestPics/KLucky_Restriction_Map.jpg", "fasta_file": "https://phagesdb.org/media/fastas/KLucky39.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KLucky39_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KLucky39_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:41:40-04:00" }, { "phage_name": "Klug", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after one of the farmers at FieldTrip Farm who really wanted a phage named after himself.", "finder_name": "Adam Rudner", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.333383 N", "found_GPS_long": "75.836466 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in moist organic soil from under a row cover adjacent to a yellow zucchini plant. Direct isolation plate was webbed. With dilution the phage formed small plaques and appeared pure. Zucharescens was isolated on a related Arthrobacter host from the same sample.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small/medium plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JeffKlug_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/JeffKlug_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/JeffKlug_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-09-19T07:29:45-04:00", "date_modified": "2025-04-04T11:37:33-04:00" }, { "phage_name": "Klycomp", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name was chosen because the soil sample came from Doctor Klyczek's compost from her home in Hudson, WI. We combined \"Kly\" from Klyczek and \"comp\" from the compost.", "finder_name": "Porter Swartz and Garrett Finn", "found_city": "Hudson", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.984444 N", "found_GPS_long": "92.754444 W", "found_year": 2013, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "The phage may be similar to Seume and Katherine. The phage was found in a pile of clean (screened) compost along the north side of Doctor Klyczek's house in Hudson, WI. The soil condition was very loose and semi-moist. The soil depth was 30mm. The air temperature was 55 degrees F. Also, the weather was sunny and dry.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The size of the plaque was 3mm and appeared clear. It has a halo around it.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Klycomp_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Klycomp_EMPic.bmp", "digest_file": "https://phagesdb.org/media/digestPics/Klycomp_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Klycomp_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Klycomp_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-12-05T21:18:13-05:00", "date_modified": "2024-02-25T15:27:48-05:00" }, { "phage_name": "Kmae", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Keiko Wadsworth", "found_city": "Raleigh", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.785497 N", "found_GPS_long": "78.677997 W", "found_year": 2009, "p_institution": { "institution_code": "NCSU", "institution_name": "North Carolina State University", "institution_logo": "https://phagesdb.org/media/institutions/ncstate-logo.png", "institution_url": "http://www.ncsu.edu/", "institution_city": "Raleigh", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "35.784920", "institution_longitude": "-78.68212" }, "enriched_sample": true, "discovery_notes": "The sample was taken from a location behind Lee Residence Hall at NCSU, Raleigh, North Carolina. The sample was taken on the curb of a parking lot near a standing puddle at an elevation of 375 feet. The location seems to be occupied by many people and also resides near a dining hall within 7 yards of a dumpster.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "•\t.5 cm in diameter\r\n•\tClear circular plaques \r\n•\tIncubation of 48 Hours at 37 degrees Celsius\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kmae_Plague.jpg", "em_file": "https://phagesdb.org/media/emPics/Kmae_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kmae_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kmae_Plague_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kmae_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kmla", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Seongwon", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.826 N", "found_GPS_long": "71.4035 W", "found_year": 2011, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": null, "discovery_notes": "Soil Depth 1.5 cm", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very small, clear, halo exists from time to time. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-05-04T08:04:03-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "KnaidelBubble", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Gayhart, Austin & Usmani, Aizah", "found_city": "Burtonsville", "found_state": "MD", "found_country": "United States of America", "found_GPS_lat": "39.099739 N", "found_GPS_long": "76.93064 W", "found_year": 2024, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "turbid plaques with two size morhoplogies:smaller ones ~1.3 mm and meduim ones ~5 mm after 48 hours of incubation on S. Mirabilis", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KnaidelBubble_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/KnaidelBubble_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KnaidelBubble_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KnaidelBubble_Plaque_8PMwhKN.png", "em_thumb_file": "https://phagesdb.org/media/emPics/KnaidelBubble_EMPic.png", "dnam_file": null, "date_added": "2024-10-22T12:33:03-04:00", "date_modified": "2025-04-04T11:37:44-04:00" } ] }
