Detailed Information for Phage Abba |
Discovery Information |
Isolation Host | Arthrobacter globiformis B-2979 |
Found By | David Bojorquez |
Year Found | 2019 |
Location Found | Los Angeles, CA USA |
Finding Institution | University of California, Los Angeles |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 25°C |
GPS Coordinates | 34.067996 N, 118.450765 W Map |
Discovery Notes | Arthrobacter phage ABBA was isolated from soil by enrichment plating at 25°C from dry surface soil. The sample was collected by David Bojorquez in Los Angeles. The phage was isolated and characterized by Team Bruinfluenza (Jasmine Alcantara, Cara Budzinski, David Bojorquez, & Jose Arambulo) and Team Legal Drinking Phage (Manreet Dosanjh, Gillian Campbell, Olivia Yee, Miguel Gallardo).
Instructor: Amanda Freise Teaching Assistant: Ryan Ngo |
Naming Notes | Each letter of our phage name comes from our last name initials (and because Ryan played the song “Mamma Mia” a handful of times in class). |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 3, 2020 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1921 |
Genome length (bp) | 46623 |
Character of genome ends | Circularly Permuted |
GC Content | 65.0% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | AO |
Subcluster | AO3 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | University of California, Los Angeles |
Annotation Status | In GenBank |
Plaque Notes | Description of plaque morphology: clear
Average size (and size range) diameter in mm: 1.5-3mm |
Morphotype | Myoviridae |
Has been Phamerated? | Yes |
Gene List |
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Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MT024868 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
116 |
Pitt Freezer Box Grid# |
C1 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |