| Detailed Information for Phage Abba | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | David Bojorquez |
| Year Found | 2019 |
| Location Found | Los Angeles, CA USA |
| Finding Institution | University of California, Los Angeles |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 25°C |
| GPS Coordinates | 34.067996 N, 118.450765 W Map |
| Discovery Notes | Arthrobacter phage ABBA was isolated from soil by enrichment plating at 25°C from dry surface soil. The sample was collected by David Bojorquez in Los Angeles. The phage was isolated and characterized by Team Bruinfluenza (Jasmine Alcantara, Cara Budzinski, David Bojorquez, & Jose Arambulo) and Team Legal Drinking Phage (Manreet Dosanjh, Gillian Campbell, Olivia Yee, Miguel Gallardo). Instructor: Amanda Freise Teaching Assistant: Ryan Ngo |
| Naming Notes | Each letter of our phage name comes from our last name initials (and because Ryan played the song “Mamma Mia” a handful of times in class). |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 3, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1921 |
| Genome length (bp) | 46623 |
| Character of genome ends | Circularly Permuted |
| GC Content | 65.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AO |
| Subcluster | AO3 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewEastWest (None) Beans (AO1) Brent (AO1) Franzy (AO1) Jawnski (AO1) King2 (AO1) NathanVaag (AO1) Piccoletto (AO1) BarretLemon (AO2) BigDome (AO2) BossLady (AO2) GravityBall (AO2) Grekaycon (AO2) JKerns (AO2) Jordan (AO2) LeeroyJ (AO2) Martha (AO2) Pippa (AO2) Shade (AO2) Sicarius2 (AO2) Sonny (AO2) StevieBAY (AO2) TaeYoung (AO2) Timinator (AO2) Wyborn (AO2) Zartrosa (AO2) Abba (AO3) |
| Annotating Institution | University of California, Los Angeles |
| Annotation Status | In GenBank |
| Plaque Notes | Description of plaque morphology: clear Average size (and size range) diameter in mm: 1.5-3mm |
| Morphotype | Myoviridae |
| Number of Genes | 71 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewAbba_1 Abba_2 Abba_3 Abba_4 Abba_5 Abba_6 Abba_7 Abba_8 Abba_9 Abba_10 Abba_11 Abba_12 Abba_13 Abba_14 Abba_15 Abba_16 Abba_17 Abba_18 Abba_19 Abba_20 Abba_21 Abba_22 Abba_23 Abba_24 Abba_25 Abba_26 Abba_27 Abba_28 Abba_29 Abba_30 Abba_31 Abba_32 Abba_33 Abba_34 Abba_35 Abba_36 Abba_37 Abba_38 Abba_39 Abba_40 Abba_41 Abba_42 Abba_43 Abba_44 Abba_45 Abba_46 Abba_47 Abba_48 Abba_49 Abba_50 Abba_51 Abba_52 Abba_53 Abba_54 Abba_55 Abba_56 Abba_57 Abba_58 Abba_59 Abba_60 Abba_61 Abba_62 Abba_63 Abba_64 Abba_65 Abba_66 Abba_67 Abba_68 Abba_69 Abba_70 Abba_71 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MT024868 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 116 |
| Pitt Freezer Box Grid# | C1 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
