| Detailed Information for Phage Coldpizza | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Navya Reddy |
| Year Found | 2024 |
| Location Found | Pittsburgh, PA United States |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.440107 N, 79.958725 W Map |
| Discovery Notes | Collected from a plant bed on the sidewalk, was topped with mulch and a little mushy due to recent rain. Top layer mulch, then darker soil, then lighter colored dirt underneath. Located near a construction site. |
| Naming Notes | We were hungry |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 1, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1406 |
| Genome length (bp) | 61651 |
| Character of genome ends | Circularly Permuted |
| GC Content | 67.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DR |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | Being Annotated (Expected completion by 1/1/2025) |
| Plaque Notes | plaques are very small in size and opaque indicating that it is temperate |
| Morphotype | Siphoviridae |
| Number of Genes | 81 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewColdpizza_1 Coldpizza_2 Coldpizza_3 Coldpizza_4 Coldpizza_5 Coldpizza_6 Coldpizza_7 Coldpizza_8 Coldpizza_9 Coldpizza_10 Coldpizza_11 Coldpizza_12 Coldpizza_13 Coldpizza_14 Coldpizza_15 Coldpizza_16 Coldpizza_17 Coldpizza_18 Coldpizza_19 Coldpizza_20 Coldpizza_21 Coldpizza_22 Coldpizza_23 Coldpizza_24 Coldpizza_25 Coldpizza_26 Coldpizza_27 Coldpizza_28 Coldpizza_29 Coldpizza_30 Coldpizza_31 Coldpizza_32 Coldpizza_33 Coldpizza_34 Coldpizza_35 Coldpizza_36 Coldpizza_37 Coldpizza_38 Coldpizza_39 Coldpizza_40 Coldpizza_41 Coldpizza_42 Coldpizza_43 Coldpizza_44 Coldpizza_45 Coldpizza_46 Coldpizza_47 Coldpizza_48 Coldpizza_49 Coldpizza_50 Coldpizza_51 Coldpizza_52 Coldpizza_53 Coldpizza_54 Coldpizza_55 Coldpizza_56 Coldpizza_57 Coldpizza_58 Coldpizza_59 Coldpizza_60 Coldpizza_61 Coldpizza_62 Coldpizza_63 Coldpizza_64 Coldpizza_65 Coldpizza_66 Coldpizza_67 Coldpizza_68 Coldpizza_69 Coldpizza_70 Coldpizza_71 Coldpizza_72 Coldpizza_73 Coldpizza_74 Coldpizza_75 Coldpizza_76 Coldpizza_77 Coldpizza_78 Coldpizza_79 Coldpizza_80 Coldpizza_81 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 189 |
| Pitt Freezer Box Grid# | A4 |