Microbacterium phage DannyDe
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Detailed Information for Phage DannyDe
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByEric Nordberg and Gianna Moscatelli
Year Found2019
Location FoundPhiladelphia, PA United States
Finding InstitutionUniversity of the Sciences (now St. Joseph's Univ)
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature23°C
GPS Coordinates39.94521 N, 75.208113 W Map
Discovery NotesThis soil sample was collected outside of the McNeil Science And Technology Center at University of the Sciences in Philadelphia. This soil sample was taken from the smartest dirt at a depth of 2cm.
Naming NotesWe named this phage DannyDe because the soil sample was taken only 15 minutes from the show it's always sunny in Philadelphia, who one of the main actors name is DannyDe
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 20, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage49
Genome length (bp)56087
Character of genome endsCircularly Permuted
GC Content63.6%
Sequencing NotesThe phage was sequenced as part of a DOGEMS sample.
Fasta file available?Yes: Download fasta file
Characterization
ClusterEF
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionSalish Kootenai College
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes83
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

DannyDe_1

DannyDe_2

DannyDe_3

DannyDe_4

DannyDe_5

DannyDe_6

DannyDe_7

DannyDe_8

DannyDe_9

DannyDe_10
(terminase)

DannyDe_11

DannyDe_12
(portal protein)

DannyDe_13
(capsid maturation protease and MuF-like fusion protein)

DannyDe_14

DannyDe_15
(scaffolding protein)

DannyDe_16
(minor capsid protein)

DannyDe_17
(major capsid protein)

DannyDe_18

DannyDe_19

DannyDe_20
(head-to-tail stopper)

DannyDe_21

DannyDe_22
(tail terminator)

DannyDe_23

DannyDe_24

DannyDe_25
(major tail protein)

DannyDe_26
(tail assembly chaperone)

DannyDe_27
(tail assembly chaperone)

DannyDe_28
(tape measure protein)

DannyDe_29
(minor tail protein)

DannyDe_30
(minor tail protein)

DannyDe_31
(minor tail protein)

DannyDe_32
(minor tail protein)

DannyDe_33

DannyDe_34
(lysin A)

DannyDe_35

DannyDe_36

DannyDe_37
(holin)

DannyDe_38

DannyDe_39

DannyDe_40
(DNA helicase)

DannyDe_41

DannyDe_42

DannyDe_43
(Cas4 family exonuclease)

DannyDe_44

DannyDe_45
(RecA-like DNA recombinase)

DannyDe_46

DannyDe_47
(DNA primase/helicase)

DannyDe_48

DannyDe_49

DannyDe_50

DannyDe_51

DannyDe_52
(oxidoreductase)

DannyDe_53
(ThyX-like thymidylate synthase)

DannyDe_54

DannyDe_55
(MazG-like nucleotide pyrophosphohydrolase)

DannyDe_56

DannyDe_57
(DnaE-like DNA polymerase III)

DannyDe_58
(DnaE-like DNA polymerase III)

DannyDe_59

DannyDe_60

DannyDe_61

DannyDe_62

DannyDe_63

DannyDe_64

DannyDe_65

DannyDe_66

DannyDe_67

DannyDe_68

DannyDe_69

DannyDe_70

DannyDe_71

DannyDe_72

DannyDe_73

DannyDe_74
(RuvC-like resolvase)

DannyDe_75

DannyDe_76

DannyDe_77

DannyDe_78

DannyDe_79

DannyDe_80

DannyDe_81

DannyDe_82

DannyDe_83

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW055903
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.43*10^7
Pitt Freezer Box# 98
Pitt Freezer Box Grid# C10
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload