Streptomyces phage Dennebes
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Detailed Information for Phage Dennebes
Discovery Information
Isolation HostStreptomyces mirabilis NRRL B-2400
Found ByJunior Mkpasi, Phebe Ismail
Year Found2022
Location FoundWestminster, MD United States
Finding InstitutionUniversity of Maryland, Baltimore County
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature71°C
GPS Coordinates39.5 N, 77.0 W Map
Discovery NotesCollected by Junior Mkpasi on 9/12/22 from a wet soil rich in organic matter.
Naming NotesThe naming came from the joining together of my partner's name (Dennis) and my name (Phebe).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 23, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage1735
Genome length (bp)46162
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length254 bp
GC Content60.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBF
Subcluster--
Cluster Life CycleLytic
Lysogeny NotesAfter testing for lysogen, the results showed that no lysogen was formed.
Other Cluster Members
Annotating InstitutionUniversity of Maryland, Baltimore County
Annotation StatusIn GenBank
Plaque Notes~ 1mm in diameter, cloudy and round after 48 hours at 30 C. on S. mirabilis.
MorphotypePodoviridae
Number of Genes68
Number of tRNAs23
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Dennebes_1
(Terminase large subunit)

Dennebes_2
(endolysin)

Dennebes_3
(portal protein)

Dennebes_4

Dennebes_5

Dennebes_6

Dennebes_7

Dennebes_8

Dennebes_9

Dennebes_10

Dennebes_11
(minor tail protein)

Dennebes_12
(minor tail protein)

Dennebes_13

Dennebes_14 — tRNA
(tRNA-Pro(tgg))

Dennebes_15 — tRNA
(tRNA-Gly(tcc))

Dennebes_16 — tRNA
(tRNA-Met(cat))

Dennebes_17 — tRNA
(tRNA-Trp(cca))

Dennebes_18 — tRNA
(tRNA-Gln(ctg))

Dennebes_19 — tRNA
(tRNA-Ser(aga))

Dennebes_20 — tRNA
(tRNA-Ser(gct))

Dennebes_21 — tRNA
(tRNA-Tyr(gta))

Dennebes_22 — tRNA
(tRNA-Cys(gca))

Dennebes_23 — tRNA
(tRNA-Ala(tgc))

Dennebes_24 — tRNA
(tRNA-Ile(gat))

Dennebes_25 — tRNA
(tRNA-Asp(gtc))

Dennebes_26 — tRNA
(tRNA-Leu(tag))

Dennebes_27 — tRNA
(tRNA-Phe(gaa))

Dennebes_28 — tRNA
(tRNA-His(gtg))

Dennebes_29 — tRNA
(tRNA-Arg(acg))

Dennebes_30 — tRNA
(tRNA-Lys(ctt))

Dennebes_31 — tRNA
(tRNA-Glu(ctc))

Dennebes_32 — tRNA
(tRNA-Thr(agt))

Dennebes_33 — tRNA
(tRNA-Asn(gtt))

Dennebes_34 — tRNA
(tRNA-Arg(cct))

Dennebes_35 — tRNA
(tRNA-Val(tac))

Dennebes_36
(scaffolding protein)

Dennebes_37
(major capsid protein)

Dennebes_38

Dennebes_39

Dennebes_40

Dennebes_41

Dennebes_42

Dennebes_43

Dennebes_44

Dennebes_45

Dennebes_46

Dennebes_47

Dennebes_48

Dennebes_49

Dennebes_50
(holin)

Dennebes_51

Dennebes_52

Dennebes_53

Dennebes_54

Dennebes_55

Dennebes_56

Dennebes_57

Dennebes_58
(deoxycytidylate deaminase)

Dennebes_59

Dennebes_60

Dennebes_61

Dennebes_62
(DNA primase)

Dennebes_63
(DNA primase)

Dennebes_64
(Holliday junction resolvase)

Dennebes_65

Dennebes_66
(DnaB-like dsDNA helicase)

Dennebes_67

Dennebes_68

Dennebes_69
(Cas4 exonuclease)

Dennebes_70 — tRNA
(tRNA-Leu(gag))

Dennebes_71
(WhiB family transcription factor)

Dennebes_72

Dennebes_73
(metallophosphoesterase)

Dennebes_74
(helix-turn-helix DNA binding domain protein)

Dennebes_75

Dennebes_76

Dennebes_77

Dennebes_78

Dennebes_79

Dennebes_80

Dennebes_81

Dennebes_82

Dennebes_83
(ArdA-like antirestriction protein)

Dennebes_84
(Terminase small subunit)

Dennebes_85

Dennebes_86

Dennebes_87

Dennebes_88

Dennebes_89

Dennebes_90

Dennebes_91

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR253913
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5 x 10^11 pfu/ml
Pitt Freezer Box# 151
Pitt Freezer Box Grid# B3
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Virtual Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload