| Detailed Information for Phage Nubia | |
| Discovery Information | |
| Isolation Host | Arthrobacter sp. ATCC 21022 |
| Former names | Perseverance |
| Found By | Alex Munoz |
| Year Found | 2016 |
| Location Found | Waco, TX USA |
| Finding Institution | Baylor University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 31.551389 N, 97.118611 W Map |
| Discovery Notes | The soil was collected by Michael Munson at 6:43 and was found right next to a drainage ditch outside of the dining hall. It has a pH of 6.8. The soil was light brown and had a fluffy texture. The temperature it was collected at was 74 degrees Fahrenheit. |
| Naming Notes | I named the phage "Nubia" because it is a rare name that I knew abided by all naming rules and would not have been taken. It is also a name that runs in my family. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 4, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 2017 |
| Genome length (bp) | 44045 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 13 bases |
| Overhang Sequence | GGTAACCGTGATA |
| GC Content | 60.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AK |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAlbanese Aledel AppleCider AustinPowers Beethoven Bennie BigMack Bodacious BrotherBLo CallieOMalley Canowicakte Carpal ChewChew Cholula Chridison Christian CristinaYang Daiboju Dino DreamTeam DrRobert EstebanJulior Eunoia Fluke Gisselle Glenn GreenHearts Greenhouse HeadNerd Herb Huckleberry HunterDalle Huntingdon Immaculata Joann Jumboset Kalizoi KingBob Kittykat Korra Lakshmi Lasagna Lennox LilStuart Litotes Lucy Makoto MamaPearl Maria1952 MeganNoll Misaeng Moki MrGloopy Nancia Nubia OMalley OurGirlNessie Oxynfrius PartyCup PinkFriday PitaDog Potatoes Preamble Pterodactyl Pumancara RAP15 RcigaStruga Riovina Riverdale Rozby Savage2526 Scuttle Sergei Supakev Suppi TattModd Temper16 Urla Vallejo Vulture Wawa Wayne WonderBoy Zorro |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | TEM results: Phage head- 55nm Phage tail- 120nm Plaque diameter and morphology: Diameter- Morphology- Lytic spots, perfect circles that were clear and small. |
| Morphotype | Siphoviridae |
| Number of Genes | 61 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewNubia_1 Nubia_2 Nubia_3 Nubia_4 Nubia_5 Nubia_6 Nubia_7 Nubia_8 Nubia_9 Nubia_10 Nubia_11 Nubia_12 Nubia_13 Nubia_14 Nubia_15 Nubia_17 Nubia_16 Nubia_18 Nubia_19 Nubia_20 Nubia_21 Nubia_22 Nubia_23 Nubia_24 Nubia_25 Nubia_26 Nubia_27 Nubia_28 Nubia_29 Nubia_30 Nubia_31 Nubia_32 Nubia_33 Nubia_34 Nubia_35 Nubia_36 Nubia_37 Nubia_38 Nubia_39 Nubia_40 Nubia_41 Nubia_42 Nubia_43 Nubia_44 Nubia_45 Nubia_46 Nubia_47 Nubia_48 Nubia_49 Nubia_50 Nubia_51 Nubia_52 Nubia_53 Nubia_54 Nubia_55 Nubia_56 Nubia_57 Nubia_58 Nubia_59 Nubia_60 Nubia_61 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MF140424 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 1.2 x 10^9 |
| Date of SEA Lysate Titering | Nov 18, 2016 |
| Pitt Freezer Box# | 35 |
| Pitt Freezer Box Grid# | G2 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
