| Detailed Information for Phage Oogie | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Mikayla Cline |
| Year Found | 2021 |
| Location Found | Georgetown, IN United States |
| Finding Institution | Indiana University-Southeast |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 25°C |
| GPS Coordinates | 38.293056 N, 85.966389 W Map |
| Discovery Notes | The soil was found in Georgetown, Indiana 47122. It was extracted from an old, abandoned strawberry patch next to the side of a house. The soil was very dry and hard to get up. It was also under a tarp and next to a concrete sidewalk. There were many weeds and other forms of greenery in the soil surrounding it. The collected sample had lots of roots and small sticks as well. |
| Naming Notes | Due to the upcoming holiday (Halloween), I chose a name from one of my favorite Halloween movies (The Nightmare Before Christmas). My favorite character is Oogie Boogie so I named the sample Oogie. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Apr 27, 2023 |
| Sequencing Facility | NC State Genomic Sciences Laboratory |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 2534 |
| Genome length (bp) | 90938 |
| Character of genome ends | Circularly Permuted |
| GC Content | 60.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DQ |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | Indiana University-Southeast |
| Annotation Status | Overdue (Expected completion by 10/26/2024) |
| Plaque Notes | All plaques were pretty uniform and about 1 mm in diameter each time a plaque assay was performed. Most plaques were through the whole bacterial lawn as well without any cloudiness. Some had rough edges while some had very smooth and round edges. |
| Number of Genes | 124 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewOogie_1 Oogie_2 Oogie_3 Oogie_4 Oogie_5 Oogie_6 Oogie_7 Oogie_8 Oogie_9 Oogie_10 Oogie_11 Oogie_12 Oogie_13 Oogie_14 Oogie_15 Oogie_16 Oogie_17 Oogie_18 Oogie_19 Oogie_20 Oogie_21 Oogie_22 Oogie_23 Oogie_24 Oogie_25 Oogie_26 Oogie_27 Oogie_28 Oogie_29 Oogie_30 Oogie_31 Oogie_32 Oogie_33 Oogie_34 Oogie_35 Oogie_36 Oogie_37 Oogie_38 Oogie_39 Oogie_40 Oogie_41 Oogie_42 Oogie_43 Oogie_44 Oogie_45 Oogie_46 Oogie_47 Oogie_48 Oogie_49 Oogie_50 Oogie_51 Oogie_52 Oogie_53 Oogie_54 Oogie_55 Oogie_56 Oogie_57 Oogie_58 Oogie_59 Oogie_60 Oogie_61 Oogie_62 Oogie_63 Oogie_64 Oogie_65 Oogie_66 Oogie_67 Oogie_68 Oogie_69 Oogie_70 Oogie_71 Oogie_72 Oogie_73 Oogie_74 Oogie_75 Oogie_76 Oogie_77 Oogie_78 Oogie_79 Oogie_80 Oogie_81 Oogie_82 Oogie_83 Oogie_84 Oogie_85 Oogie_86 Oogie_87 Oogie_88 Oogie_89 Oogie_90 Oogie_91 Oogie_92 Oogie_93 Oogie_94 Oogie_95 Oogie_96 Oogie_97 Oogie_98 Oogie_99 Oogie_100 Oogie_101 Oogie_102 Oogie_103 Oogie_104 Oogie_105 Oogie_106 Oogie_107 Oogie_108 Oogie_109 Oogie_110 Oogie_111 Oogie_112 Oogie_113 Oogie_114 Oogie_115 Oogie_116 Oogie_117 Oogie_118 Oogie_119 Oogie_120 Oogie_121 Oogie_122 Oogie_123 — tRNA Oogie_124 Oogie_125 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 139 |
| Pitt Freezer Box Grid# | F1 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |