Gordonia phage Pimento
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Detailed Information for Phage Pimento
Discovery Information
Isolation HostGordonia terrae NRRL B-16283
Found ByCameron Kedy and Hari Kotturi
Year Found2019
Location FoundOklahoma City, OK USA
Finding InstitutionUniversity of Central Oklahoma
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature28°C
GPS Coordinates35.435 N, 97.468889 W Map
Discovery NotesThe soil was collected from rich dark brown compost from a friend’s vegetable and herb garden.
Naming NotesCharacter name from Brooklyn-99
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 19, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage74
Genome length (bp)49994
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGCCGCGGTA
GC Content66.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDI
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionQueensborough Community College
Annotation StatusIn GenBank
Number of Genes77
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Pimento_1
(NucT-like nuclease)

Pimento_2

Pimento_3

Pimento_4

Pimento_5
(Terminase, small subunit)

Pimento_6
(Terminase large subunit)

Pimento_7
(portal protein)

Pimento_8
(capsid maturation protease)

Pimento_9
(scaffolding protein)

Pimento_10
(major capsid protein)

Pimento_11

Pimento_12

Pimento_13
(head-to-tail adaptor)

Pimento_14
(head-to-tail stopper)

Pimento_15
(tail terminator)

Pimento_16

Pimento_17
(major tail protein)

Pimento_18

Pimento_19
(tail assembly chaperone)

Pimento_20
(tail assembly chaperone)

Pimento_21
(tape measure protein)

Pimento_22
(minor tail protein)

Pimento_23
(minor tail protein)

Pimento_24

Pimento_25
(minor tail protein)

Pimento_26
(minor tail protein)

Pimento_27

Pimento_28

Pimento_29
(lysin A, protease C39 domain)

Pimento_30
(lysin A, glycosyl hydrolase domain)

Pimento_31
(holin)

Pimento_32

Pimento_33

Pimento_34
(antitoxin in toxin/antitoxin system, HicB-like)

Pimento_35
(toxin in toxin/antitoxin system, HicA-like)

Pimento_36

Pimento_37

Pimento_38

Pimento_39
(tyrosine integrase)

Pimento_40

Pimento_41
(immunity repressor)

Pimento_42
(Cro (control of repressor's operator))

Pimento_43
(excise)

Pimento_44

Pimento_45

Pimento_46

Pimento_47

Pimento_48
(Cas4 exonuclease)

Pimento_49

Pimento_50

Pimento_51

Pimento_52

Pimento_53

Pimento_54

Pimento_55

Pimento_56

Pimento_57

Pimento_58

Pimento_59

Pimento_60

Pimento_61

Pimento_62

Pimento_63

Pimento_64

Pimento_65
(metallophosphatase)

Pimento_66

Pimento_67

Pimento_68
(nucleoside deoxyribosyltransferase)

Pimento_69
(DNA methyltransferase)

Pimento_70

Pimento_71

Pimento_72
(DNA primase)

Pimento_73
(endonuclease VII)

Pimento_74

Pimento_75
(DNA binding protein)

Pimento_76
(HNH endonuclease)

Pimento_77

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPQ244022
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 129
Pitt Freezer Box Grid# B9
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload