Arthrobacter phage RcigaStruga
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Detailed Information for Phage RcigaStruga
Discovery Information
Isolation HostArthrobacter sp. ATCC 21022
Found ByRexhina Struga
Year Found2015
Location FoundRadnor, PA USA
Finding InstitutionCabrini University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.070497 N, 75.3788 W Map
Discovery NotesI found it at Cabrini College near a parking lot.
Naming NotesEvery letter in the name is the first letter of all my sisters (4).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 17, 2015
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage1761
Genome length (bp)43891
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceGGTAACCGTGATA
GC Content60.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAK
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesThe plaques are very small. But with varying Calcium Chloride concentration the plaque size grows.
MorphotypeSiphoviridae
Number of Genes62
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

RcigaStruga_1

RcigaStruga_2

RcigaStruga_3

RcigaStruga_4

RcigaStruga_5
(terminase)

RcigaStruga_6
(portal and MuF-like fusion protein)

RcigaStruga_7
(capsid maturation protease)

RcigaStruga_8
(major capsid protein)

RcigaStruga_9

RcigaStruga_10

RcigaStruga_11
(head-to-tail adaptor)

RcigaStruga_12
(head-to-tail stopper)

RcigaStruga_13

RcigaStruga_14
(tail terminator)

RcigaStruga_15
(major tail protein)

RcigaStruga_16
(tail assembly chaperone)

RcigaStruga_17
(tail assembly chaperone)

RcigaStruga_18
(tape measure protein)

RcigaStruga_19
(minor tail protein)

RcigaStruga_20
(minor tail protein)

RcigaStruga_21
(minor tail protein)

RcigaStruga_22
(minor tail protein)

RcigaStruga_23

RcigaStruga_24

RcigaStruga_25
(endolysin)

RcigaStruga_26
(holin)

RcigaStruga_27
(helix-turn-helix DNA-binding domain protein)

RcigaStruga_28

RcigaStruga_29
(DNA helicase)

RcigaStruga_30
(helix-turn-helix DNA-binding domain protein)

RcigaStruga_31

RcigaStruga_32

RcigaStruga_33

RcigaStruga_34

RcigaStruga_35

RcigaStruga_36

RcigaStruga_37

RcigaStruga_38

RcigaStruga_39

RcigaStruga_40

RcigaStruga_41
(Cas4 family exonuclease)

RcigaStruga_42

RcigaStruga_43
(RecA-like DNA recombinase)

RcigaStruga_44

RcigaStruga_45
(DNA primase/polymerase/helicase)

RcigaStruga_46

RcigaStruga_47
(DNA polymerase I)

RcigaStruga_48
(PurA-like adenylosuccinate synthetase)

RcigaStruga_49

RcigaStruga_50

RcigaStruga_51

RcigaStruga_52
(deoxyuridine triphosphatase)

RcigaStruga_53

RcigaStruga_54

RcigaStruga_55

RcigaStruga_56

RcigaStruga_57

RcigaStruga_58

RcigaStruga_59

RcigaStruga_60

RcigaStruga_61

RcigaStruga_62
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX576640
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Designator Cabrini College
SEA Lysate Titer 5.63 X 10^8
Date of SEA Lysate Titering Jun 10, 2015
Pitt Freezer Box# 149
Pitt Freezer Box Grid# D2
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload