Detailed Information for Phage Riovina |
Discovery Information |
Isolation Host | Arthrobacter sp. ATCC 21022 |
Found By | Giovanna Sabini-Leite, Katerina Rusa, Reem Ladadwa |
Year Found | 2017 |
Location Found | Northampton, MA USA |
Finding Institution | Smith College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Unknown |
Isolation Temperature | Not entered |
GPS Coordinates | 42.318222 N, 72.639713 W Map |
Discovery Notes | Botanical Garden - Fountain Date and time collected: 18.09.2017 Temperature: 22℃ Weather: cloudy, earlier today it was foggy and drizzling Consistency of soil: wet, dark How deep: about 15 cm |
Naming Notes | The name is a combination of the names of the discoverers. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Feb 8, 2018 |
Sequencing Facility | Smith College |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1406 |
Genome length (bp) | 43739 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 13 bases |
Overhang Sequence | GCTTACCGTGATA |
GC Content | 61.6% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | AK |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Plaque Notes | The plaque appears to be in the lytic phase. |
Morphotype | Siphoviridae |
Number of Genes | 60 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MK279874 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
SEA Lysate Titer |
9.6*10^11 |
Pitt Freezer Box# |
58 |
Pitt Freezer Box Grid# |
H9 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |