Gordonia phage Yeshua
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Detailed Information for Phage Yeshua
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByAl T. Chesal
Year Found2024
Location FoundClearwater,, FL united states
Finding InstitutionUniversity of South Florida
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates27.9428 N, 82.743 W Map
Naming NotesI named my phage after my brother's middle name. He slowly demolishes food like my phage slowly demolishes Gordonia Rub.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 16, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage4463
Genome length (bp)61131
Character of genome endsCircularly Permuted
GC Content68.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDR
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of South Florida
Annotation StatusQC Complete
Plaque NotesMedium/small plaques. Circular with smooth edges. Lytic.
Number of Genes85
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Yeshua_1
(ParB-N-terminal-like domain)

Yeshua_2
(Tet-like J-binding protein)

Yeshua_3
(aGPT-Pplase2 domain protein)

Yeshua_4
(5-hmU DNA kinase)

Yeshua_5

Yeshua_6
(terminase)

Yeshua_7

Yeshua_8
(RuvC-like resolvase)

Yeshua_9

Yeshua_10
(portal protein)

Yeshua_11

Yeshua_12

Yeshua_13
(major capsid hexamer protein)

Yeshua_14
(major capsid pentamer protein)

Yeshua_15

Yeshua_16

Yeshua_17

Yeshua_18

Yeshua_19

Yeshua_20
(major tail protein)

Yeshua_21
(head-to-tail adaptor)

Yeshua_22

Yeshua_23

Yeshua_24

Yeshua_25

Yeshua_26
(tape measure protein)

Yeshua_27
(minor tail protein)

Yeshua_28
(minor tail protein)

Yeshua_29
(minor tail protein)

Yeshua_30

Yeshua_31

Yeshua_32

Yeshua_33

Yeshua_34

Yeshua_35

Yeshua_36
(hydrolase)

Yeshua_37

Yeshua_38

Yeshua_39

Yeshua_40
(DNA binding protein)

Yeshua_41

Yeshua_42

Yeshua_43
(lysin A, L-Ala-D-Glu peptidase domain)

Yeshua_44
(lysin A, glycosyl hydrolase domain)

Yeshua_45
(lysin B)

Yeshua_46

Yeshua_47
(exonuclease)

Yeshua_48

Yeshua_49
(DNA helicase)

Yeshua_50

Yeshua_51

Yeshua_52
(RepA-like helicase)

Yeshua_53

Yeshua_54
(DNA polymerase I)

Yeshua_55

Yeshua_56

Yeshua_57

Yeshua_58

Yeshua_59

Yeshua_60
(polynucleotide kinase)

Yeshua_61

Yeshua_62
(ribbon-helix-helix DNA binding domain)

Yeshua_63

Yeshua_64

Yeshua_65
(helix-turn-helix DNA binding domain)

Yeshua_66

Yeshua_67

Yeshua_68

Yeshua_69

Yeshua_70

Yeshua_71

Yeshua_72

Yeshua_73
(DNA binding protein)

Yeshua_74
(HicA-like toxin in toxin/antitoxin system)

Yeshua_75

Yeshua_76

Yeshua_77

Yeshua_78
(HNH endonuclease)

Yeshua_79

Yeshua_80

Yeshua_81

Yeshua_82

Yeshua_83

Yeshua_84

Yeshua_85

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 212
Pitt Freezer Box Grid# G10
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload