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Mycobacterium phage Familton
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Detailed Information for Phage Familton
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDaniel Shen
Year Found2016
Location FoundLos Angeles, CA United States
Finding InstitutionUniversity of California, Los Angeles
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates34.075071 N, 118.450961 W Map
Discovery NotesDirect Isolation at 30C. Sample collection and initial isolation by Daniel Shen. Purification and amplification by Samuel Wu.

Genome annotation performed by Jeffrey Zhao, Nathan Sumarsono, Max Borman, Andrew Pham, Christine Shieh, Nezia Rahman, Stephanie Gao, Katherine Lee. Annotation QC performed by Jordan Moberg Parker. DNA preparation performed by Krisanavane Reddi.

Instructor: Dr. Jordan Moberg Parker
Teaching Assistant: Michelle Bina
Undergraduate Assistant: Samuel Wu

EM shows long prolate head.
Naming NotesNamed after the hit musical, which is a favorite of one of the TAs.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 20, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage90
Genome length (bp)71807
Character of genome ends3' Sticky Overhang
Overhang Length4 bases
Overhang SequenceGTGT
GC Content65.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterO
Subcluster--
Other Cluster Members
Plaque Notes1mm pinpoint plaques
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

Familton_1

Familton_2

Familton_3

Familton_4

Familton_5

Familton_6
(DNA methylase)

Familton_7
(DNA methylase)

Familton_8

Familton_9

Familton_10
(endonuclease VII)

Familton_11

Familton_12

Familton_13
(exonuclease)

Familton_14

Familton_15

Familton_16

Familton_17

Familton_18

Familton_19

Familton_20
(DNA primase/polymerase)

Familton_21

Familton_22

Familton_23
(Mycobacteriophage Mobile Element 1 (MPME 1))

Familton_24
(WhiB family transcription factor)

Familton_25

Familton_26

Familton_27

Familton_28
(HNH endonuclease)

Familton_29

Familton_30

Familton_31
(terminase)

Familton_32
(HNH endonuclease)

Familton_33
(portal protein)

Familton_34
(O-methyltransferase)

Familton_35

Familton_36
(glycosyltransferase)

Familton_37
(glycosyltransferase)

Familton_38
(capsid maturation protease)

Familton_39

Familton_40
(major capsid protein)

Familton_41

Familton_42
(head-to-tail connector protein)

Familton_43

Familton_44
(head-to-tail connector protein)

Familton_45

Familton_46

Familton_47
(head-to-tail connector protein)

Familton_48
(major tail protein)

Familton_49

Familton_50

Familton_51

Familton_52
(helix-turn-helix DNA binding domain)

Familton_53
(tail assembly chaperone)

Familton_54
(tail assembly chaperone)

Familton_55
(tape measure protein)

Familton_56
(minor tail protein)

Familton_57
(minor tail protein)

Familton_58
(minor tail protein)

Familton_59
(minor tail protein)

Familton_60
(minor tail protein, D-ala-D-ala carboxypeptidase)

Familton_61
(minor tail protein)

Familton_62
(minor tail protein)

Familton_63

Familton_64

Familton_65

Familton_66

Familton_67
(lysin A)

Familton_68
(lysin B)

Familton_69
(holin)

Familton_70

Familton_71

Familton_72

Familton_73

Familton_74
(helix-turn-helix DNA binding protein)

Familton_75

Familton_76

Familton_77

Familton_78

Familton_79

Familton_80

Familton_81
(DNA polymerase III sliding clamp (Beta))

Familton_82

Familton_83

Familton_84

Familton_85

Familton_86

Familton_87
(helix-turn-helix DNA binding protein)

Familton_88
(Ku dsDNA break-binding protein)

Familton_89

Familton_90

Familton_91

Familton_92

Familton_93

Familton_94

Familton_95

Familton_96

Familton_97
(AAA-ATPase)

Familton_98

Familton_99

Familton_100

Familton_101

Familton_102

Familton_103

Familton_104

Familton_105

Familton_106

Familton_107

Familton_108
(helix-turn-helix DNA binding domain)

Familton_109

Familton_110

Familton_111

Familton_112

Familton_113

Familton_114

Familton_115

Familton_116

Familton_117

Familton_118

Familton_119

Familton_120

Familton_121

Familton_122

Familton_123

Familton_124

Familton_125

Familton_126

Familton_127

Familton_128

Familton_129

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload