Microbacterium phage Alleb
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Detailed Information for Phage Alleb
Discovery Information
Isolation HostMicrobacterium paraoxydans NWU1
Found ByMackenzie Batt
Year Found2017
Location FoundLincoln, NE USA
Finding InstitutionNebraska Wesleyan University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates40.807982 N, 96.595328 W Map
Naming NotesAlleb is my dog Bella's name spelled backwards.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 25, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Genome length (bp)62684
Character of genome endsUnknown
Direct Terminal Repeat Length3205 bp
GC Content64.5%
Sequencing Notesat position 30354 bp approximately 45% of read contain an A instead of consensus G
Fasta file available?Yes: Download fasta file
Characterization
ClusterED
SubclusterED1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Wisconsin-River Falls
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes115
Number of tRNAs4
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Alleb_1

Alleb_2

Alleb_3

Alleb_4

Alleb_5

Alleb_6

Alleb_7

Alleb_8

Alleb_9

Alleb_10

Alleb_11

Alleb_12

Alleb_13

Alleb_14

Alleb_15

Alleb_16

Alleb_17

Alleb_18

Alleb_19

Alleb_20 — tRNA
(tRNA-Asn(gtt))

Alleb_21 — tRNA
(tRNA-Thr(agt))

Alleb_22 — tRNA
(tRNA-Thr(gta))

Alleb_23

Alleb_24

Alleb_25

Alleb_26

Alleb_27

Alleb_28

Alleb_29
(NrdH-like glutaredoxin)

Alleb_30
(exonuclease)

Alleb_31

Alleb_32
(terminase)

Alleb_33
(portal protein)

Alleb_34
(capsid maturation protease)

Alleb_35

Alleb_36
(major capsid protein)

Alleb_37

Alleb_38

Alleb_39
(phosphoesterase)

Alleb_40

Alleb_41
(head-to-tail stopper)

Alleb_42

Alleb_43
(tail terminator)

Alleb_44

Alleb_45

Alleb_46

Alleb_47
(tail assembly chaperone)

Alleb_48
(tail assembly chaperone)

Alleb_49
(tape measure protein)

Alleb_50

Alleb_51
(minor tail protein)

Alleb_52

Alleb_53

Alleb_54

Alleb_55
(endolysin)

Alleb_56

Alleb_57

Alleb_58
(RuvC-like resolvase)

Alleb_59

Alleb_60

Alleb_61

Alleb_62

Alleb_63

Alleb_64
(DNA primase/polymerase)

Alleb_117 — tRNA
(tRNA-Lys(ttt))

Alleb_65

Alleb_66

Alleb_67

Alleb_68
(exonuclease)

Alleb_69

Alleb_70
(exonuclease)

Alleb_71

Alleb_72

Alleb_73
(RNA ligase)

Alleb_74

Alleb_75
(polynucleotide kinase)

Alleb_76
(DNA helicase)

Alleb_118

Alleb_77

Alleb_78

Alleb_79

Alleb_80

Alleb_81

Alleb_82

Alleb_83

Alleb_84

Alleb_85

Alleb_86

Alleb_87

Alleb_88

Alleb_89

Alleb_90

Alleb_91

Alleb_92

Alleb_93

Alleb_94

Alleb_95

Alleb_96
(helix-turn-helix DNA binding protein)

Alleb_97

Alleb_98

Alleb_99

Alleb_100

Alleb_101

Alleb_119

Alleb_102

Alleb_103

Alleb_104

Alleb_105

Alleb_106

Alleb_107

Alleb_108

Alleb_109

Alleb_110

Alleb_111

Alleb_112

Alleb_113

Alleb_114

Alleb_115

Alleb_116

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK376963
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 68
Pitt Freezer Box Grid# A6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload