Gordonia phage Apricot
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Detailed Information for Phage Apricot
Discovery Information
Isolation HostGordonia terrae 3612
Found ByBrittany Niemann and Raven Poirier
Year Found2016
Location FoundKenosha, WI USA
Finding InstitutionCarthage College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.619701 N, 87.821162 W Map
Discovery NotesThe soil taken from a garden bed and damp from the rain that had taken place the night before.
Naming NotesThe phage reminded us of an apricot.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 24, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1631
Genome length (bp)52195
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGTTAGGCAT
GC Content63.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDN
SubclusterDN3
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionCarthage College
Annotation StatusIn GenBank
Plaque NotesThe head is curricular and the tail is long. The tail has some striations.
Has been Phamerated?Yes
Gene List

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Apricot_1
(terminase small subunit)

Apricot_2
(terminase large subunit)

Apricot_3
(portal protein)

Apricot_4
(MuF-like minor capsid protein)

Apricot_5

Apricot_6
(LamD-like capsid decoration protein)

Apricot_7
(major capsid protein)

Apricot_8

Apricot_9
(head-to-tail adaptor)

Apricot_10
(head-to-tail stopper)

Apricot_11

Apricot_12
(tail terminator)

Apricot_13
(major tail protein)

Apricot_14
(tail assembly chaperone)

Apricot_15
(tail assembly chaperone)

Apricot_16

Apricot_17
(tape measure protein)

Apricot_18
(minor tail protein)

Apricot_19
(minor tail protein)

Apricot_20

Apricot_21
(lysin A, protease C39 domain)

Apricot_22
(lysin A, glycosyl hydrolase domain)

Apricot_23
(holin)

Apricot_24

Apricot_25

Apricot_26

Apricot_27
(lysin B)

Apricot_28

Apricot_29

Apricot_30

Apricot_31

Apricot_32

Apricot_33

Apricot_34
(minor tail protein)

Apricot_35

Apricot_36

Apricot_37

Apricot_38
(helix-turn-helix DNA binding protein)

Apricot_39

Apricot_40

Apricot_41

Apricot_42

Apricot_43

Apricot_44

Apricot_45

Apricot_46

Apricot_47

Apricot_48
(tyrosine integrase)

Apricot_49
(HNH endonuclease)

Apricot_50
(helix-turn-helix DNA binding protein)

Apricot_51
(helix-turn-helix DNA binding protein)

Apricot_52
(helix-turn-helix DNA binding protein)

Apricot_53
(immunity repressor)

Apricot_54
(HNH endonuclease)

Apricot_55

Apricot_56

Apricot_57

Apricot_58
(antirepressor)

Apricot_59

Apricot_60

Apricot_61
(excise)

Apricot_62

Apricot_63

Apricot_64

Apricot_65

Apricot_66
(WhiB family transcription factor)

Apricot_67

Apricot_68

Apricot_69
(Cas4 family exonuclease)

Apricot_70

Apricot_71

Apricot_72

Apricot_73

Apricot_74

Apricot_75

Apricot_76

Apricot_77

Apricot_78

Apricot_79

Apricot_80

Apricot_81

Apricot_82

Apricot_83

Apricot_84

Apricot_85

Apricot_86

Apricot_87
(G-I-Y Y-I-G endonuclease)

Apricot_88
(helix-turn-helix DNA binding protein)

Apricot_89

Apricot_90
(RusA-like resolvase)

Apricot_91

Apricot_92

Apricot_93

Apricot_94

Apricot_95

Apricot_96

Apricot_97

Apricot_98

Apricot_99

Apricot_100

Apricot_101
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH536812
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2x10^9
Date of SEA Lysate Titering Oct 24, 2016
Pitt Freezer Box# 32
Pitt Freezer Box Grid# G12
Available Files
GenBank File for PhameratorDownload