Gordonia phage LitninMcQueen
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Detailed Information for Phage LitninMcQueen
Discovery Information
Isolation HostGordonia terrae CAG3
Found BySaanvi Billakanty
Year Found2022
Location FoundCleveland, OH United States
Finding InstitutionCase Western Reserve University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates41.5239 N, 81.6089 W Map
Discovery NotesOriginally isolated by Nevaeh Hagans.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 9, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1226
Genome length (bp)57292
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCGGGGCAT
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDN
SubclusterDN1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionCase Western Reserve University
Annotation StatusIn GenBank
Plaque Notescompletely clear, 2-3 mm in size
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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LitninMcQueen_1
(HNH endonuclease)

LitninMcQueen_2
(terminase, small subunit)

LitninMcQueen_3
(terminase, large subunit)

LitninMcQueen_4
(portal protein)

LitninMcQueen_5
(capsid maturation protease)

LitninMcQueen_6
(scaffolding protein)

LitninMcQueen_7
(major capsid protein)

LitninMcQueen_8

LitninMcQueen_9
(head-to-tail adaptor)

LitninMcQueen_10
(head-to-tail stopper)

LitninMcQueen_11

LitninMcQueen_12
(tail terminator)

LitninMcQueen_13
(major tail protein)

LitninMcQueen_14

LitninMcQueen_15
(tail assembly chaperone)

LitninMcQueen_16
(tail assembly chaperone)

LitninMcQueen_17

LitninMcQueen_18
(tape measure protein)

LitninMcQueen_19
(minor tail protein)

LitninMcQueen_20
(minor tail protein)

LitninMcQueen_21

LitninMcQueen_22
(lysin A)

LitninMcQueen_23
(holin)

LitninMcQueen_24

LitninMcQueen_25

LitninMcQueen_26

LitninMcQueen_27
(lysin B)

LitninMcQueen_28
(minor tail protein)

LitninMcQueen_29

LitninMcQueen_30

LitninMcQueen_31

LitninMcQueen_32
(minor tail protein)

LitninMcQueen_33
(minor tail protein)

LitninMcQueen_34
(minor tail protein)

LitninMcQueen_35

LitninMcQueen_36

LitninMcQueen_37

LitninMcQueen_38
(helix-turn-helix DNA binding domain)

LitninMcQueen_39

LitninMcQueen_40

LitninMcQueen_41

LitninMcQueen_42
(chaperonin, DnaJ-like)

LitninMcQueen_43
(tyrosine integrase)

LitninMcQueen_44

LitninMcQueen_45
(IrrE-like protein)

LitninMcQueen_46
(antitoxin in toxin/antitoxin system, HicB-like)

LitninMcQueen_47
(toxin in toxin/antitoxin system, HicA-like)

LitninMcQueen_48
(helix-turn-helix DNA binding domain)

LitninMcQueen_49
(helix-turn-helix DNA binding domain)

LitninMcQueen_50

LitninMcQueen_51

LitninMcQueen_52

LitninMcQueen_53

LitninMcQueen_54

LitninMcQueen_55

LitninMcQueen_56

LitninMcQueen_57
(excise)

LitninMcQueen_58

LitninMcQueen_59

LitninMcQueen_60

LitninMcQueen_61

LitninMcQueen_62

LitninMcQueen_63

LitninMcQueen_64

LitninMcQueen_65

LitninMcQueen_66

LitninMcQueen_67
(ASCE AAA-ATPase)

LitninMcQueen_68

LitninMcQueen_69
(WhiB family transcription factor)

LitninMcQueen_70
(helix-turn-helix DNA binding domain)

LitninMcQueen_71
(HNH endonuclease)

LitninMcQueen_72

LitninMcQueen_73

LitninMcQueen_74

LitninMcQueen_75

LitninMcQueen_76

LitninMcQueen_77

LitninMcQueen_78

LitninMcQueen_79

LitninMcQueen_80

LitninMcQueen_81

LitninMcQueen_82

LitninMcQueen_83

LitninMcQueen_84

LitninMcQueen_85

LitninMcQueen_86

LitninMcQueen_87

LitninMcQueen_88

LitninMcQueen_89

LitninMcQueen_90

LitninMcQueen_91

LitninMcQueen_92

LitninMcQueen_93

LitninMcQueen_94

LitninMcQueen_95
(DnaB-like dsDNA helicase)

LitninMcQueen_96
(HNH endonuclease)

LitninMcQueen_97
(Holliday junction resolvase)

LitninMcQueen_98

LitninMcQueen_99

LitninMcQueen_100

LitninMcQueen_101

LitninMcQueen_102

LitninMcQueen_103

LitninMcQueen_104

LitninMcQueen_105

LitninMcQueen_106

LitninMcQueen_107

LitninMcQueen_108

LitninMcQueen_109
(DNA binding protein)

LitninMcQueen_110

LitninMcQueen_111
(NHN endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP208924
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 156
Pitt Freezer Box Grid# G3
Available Files
EM PictureDownload
GenBank File for PhameratorDownload