Gordonia phage Periwinkle
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Detailed Information for Phage Periwinkle
Discovery Information
Isolation HostGordonia terrae 3612
Found BySophie Childs, Jack Scanlon
Year Found2021
Location FoundOrono, ME United States
Finding InstitutionUniversity of Maine, Honors College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates44.915628 N, 68.69072 W Map
Discovery NotesIsolated from a Rogers Farm manure sample
Naming NotesNormal blue was taken
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 18, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage138
Genome length (bp)55657
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCGGGGCAT
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDN
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Maine, Honors College
Annotation StatusIn GenBank
Plaque NotesPlaques are turbid and typically 3mm
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Periwinkle_1
(HNH endonuclease)

Periwinkle_2

Periwinkle_3
(terminase)

Periwinkle_4
(portal protein)

Periwinkle_5

Periwinkle_6
(scaffolding protein)

Periwinkle_7
(major capsid protein)

Periwinkle_8

Periwinkle_9
(head-to-tail adaptor)

Periwinkle_10
(head-to-tail stopper)

Periwinkle_11

Periwinkle_12
(tail terminator)

Periwinkle_13
(major tail protein)

Periwinkle_14

Periwinkle_15
(tail assembly chaperone)

Periwinkle_16
(tail assembly chaperone)

Periwinkle_17

Periwinkle_18

Periwinkle_19

Periwinkle_20
(tape measure protein)

Periwinkle_21
(minor tail protein)

Periwinkle_22
(minor tail protein)

Periwinkle_23

Periwinkle_24
(lysin A, protease M15 domain)

Periwinkle_25
(lysin A, glycosyl hydrolase domain)

Periwinkle_26
(holin)

Periwinkle_27

Periwinkle_28

Periwinkle_29

Periwinkle_30
(lysin B)

Periwinkle_31

Periwinkle_32

Periwinkle_33

Periwinkle_34

Periwinkle_35
(minor tail protein)

Periwinkle_36
(minor tail protein)

Periwinkle_37
(acetyltransferase)

Periwinkle_38

Periwinkle_39

Periwinkle_40

Periwinkle_41

Periwinkle_42
(helix-turn-helix DNA binding domain)

Periwinkle_43

Periwinkle_44

Periwinkle_45

Periwinkle_46

Periwinkle_47
(ribbon-helix-helix DNA binding domain)

Periwinkle_48

Periwinkle_49

Periwinkle_50

Periwinkle_51

Periwinkle_52

Periwinkle_53

Periwinkle_54

Periwinkle_55

Periwinkle_56

Periwinkle_57
(tyrosine integrase)

Periwinkle_58
(immunity repressor)

Periwinkle_59
(helix-turn-helix DNA binding domain)

Periwinkle_60

Periwinkle_61

Periwinkle_62

Periwinkle_63

Periwinkle_64
(ribbon-helix-helix DNA binding domain)

Periwinkle_65

Periwinkle_66

Periwinkle_67
(antirepressor)

Periwinkle_68

Periwinkle_69

Periwinkle_70

Periwinkle_71
(excise)

Periwinkle_72

Periwinkle_73
(ribbon-helix-helix DNA binding domain)

Periwinkle_74

Periwinkle_75

Periwinkle_76
(WhiB family transcription factor)

Periwinkle_77
(helix-turn-helix DNA binding domain)

Periwinkle_78

Periwinkle_79
(exonuclease)

Periwinkle_80

Periwinkle_81

Periwinkle_82

Periwinkle_83

Periwinkle_84

Periwinkle_85

Periwinkle_86

Periwinkle_87

Periwinkle_88

Periwinkle_89

Periwinkle_90

Periwinkle_91

Periwinkle_92

Periwinkle_93

Periwinkle_94

Periwinkle_95

Periwinkle_96

Periwinkle_97
(HNH endonuclease)

Periwinkle_98
(RepA-like replication initiator)

Periwinkle_99
(RusA-like resolvase (endonuclease))

Periwinkle_100

Periwinkle_101

Periwinkle_102

Periwinkle_103

Periwinkle_104

Periwinkle_105

Periwinkle_106

Periwinkle_107

Periwinkle_108
(helix-turn-helix DNA binding domain)

Periwinkle_109

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON456334
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 142
Pitt Freezer Box Grid# D10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload