Streptomyces phage Cadmus
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Detailed Information for Phage Cadmus
Discovery Information
Isolation HostStreptomyces lividans JI 1326
Found ByMatthew Jablonski and Xenaira Arguedas
Year Found2021
Location FoundSt. Louis, MO United States
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.643805 N, 90.31416 W Map
Discovery NotesSample taken at the base of a tree outside of Mudd House at Washington University in St. Louis' campus.
Naming NotesThe name Cadmus is found in Greek mythology as the name of one of the first Greek heroes. Its Greek origin also has the meaning of "one who excels."
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 13, 2025
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage250
Genome length (bp)133197
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length10716 bp
GC Content49.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBE
SubclusterBE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionWashington University in St. Louis
Annotation StatusQC Complete
Plaque NotesPlaques were small, clear, and circular.
Number of Genes229
Number of tRNAs39
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Cadmus_1

Cadmus_2

Cadmus_3

Cadmus_4

Cadmus_5

Cadmus_6

Cadmus_7
(Lsr2-like DNA bridging protein)

Cadmus_8

Cadmus_9

Cadmus_10
(ParB N-terminal-like domain)

Cadmus_11
(ParB N-terminal-like domain)

Cadmus_12

Cadmus_13

Cadmus_14

Cadmus_15

Cadmus_16

Cadmus_17

Cadmus_18

Cadmus_19

Cadmus_20

Cadmus_21
(HNH endonuclease)

Cadmus_22

Cadmus_23

Cadmus_24

Cadmus_25
(ThyX-like thymidylate synthase)

Cadmus_26

Cadmus_27

Cadmus_28

Cadmus_29

Cadmus_30

Cadmus_31

Cadmus_32

Cadmus_33
(nucleotidyl transferase)

Cadmus_34
(glycosyltransferase)

Cadmus_35
(glycosyltransferase)

Cadmus_36 — tRNA
(tRNA-Thr(cgt))

Cadmus_37
(HNH endonuclease)

Cadmus_38
(glycosyltransferase)

Cadmus_39

Cadmus_40
(glycosyltransferase)

Cadmus_41
(ribonucleotide reductase)

Cadmus_42
(endolysin)

Cadmus_43

Cadmus_44

Cadmus_45
(portal protein)

Cadmus_46

Cadmus_47
(capsid maturation protease)

Cadmus_48
(major capsid protein)

Cadmus_49

Cadmus_50
(head-to-tail adaptor)

Cadmus_51
(head-to-tail stopper)

Cadmus_52

Cadmus_53
(tail terminator)

Cadmus_54
(major tail protein)

Cadmus_55
(tail assembly chaperone)

Cadmus_56

Cadmus_57
(tape measure protein)

Cadmus_58
(minor tail protein)

Cadmus_59
(minor tail protein)

Cadmus_60

Cadmus_61
(minor tail protein)

Cadmus_62
(minor tail protein)

Cadmus_63

Cadmus_64

Cadmus_65

Cadmus_66
(HNH endonuclease)

Cadmus_67
(metallophosphatase)

Cadmus_68

Cadmus_69

Cadmus_70
(helix-turn-helix DNA binding domain)

Cadmus_71

Cadmus_72

Cadmus_73

Cadmus_74
(DnaB-like dsDNA helicase)

Cadmus_75

Cadmus_76
(DNA primase)

Cadmus_77
(SSB protein)

Cadmus_78
(DnaE-like DNA polymerase III (alpha))

Cadmus_79

Cadmus_80
(MazG-like nucleotide pyrophosphohydrolase)

Cadmus_81

Cadmus_82
(RecA-like DNA recombinase)

Cadmus_83

Cadmus_84
(Holliday junction resolvase)

Cadmus_85

Cadmus_86

Cadmus_87
(Cas4 exonuclease)

Cadmus_88

Cadmus_89
(RuvC-like resolvase)

Cadmus_90
(DprA-like ssDNA binding protein)

Cadmus_91
(thymidylate kinase)

Cadmus_92

Cadmus_93
(terminase, small subunit)

Cadmus_94
(terminase, large subunit)

Cadmus_95
(HNH endonuclease)

Cadmus_96

Cadmus_97 — tRNA
(tRNA-Gly(tcc))

Cadmus_98 — tRNA
(tRNA-Gln(ctg))

Cadmus_99 — tRNA
(tRNA-Trp(cca))

Cadmus_100

Cadmus_101

Cadmus_102 — tRNA
(tRNA-Pro(tgg))

Cadmus_103 — tRNA
(tRNA-Pro(tgg))

Cadmus_104
(nucleotidyl transferase)

Cadmus_105
(FtsK-like DNA translocase)

Cadmus_106

Cadmus_107 — tRNA
(tRNA-Ile(tat))

Cadmus_108

Cadmus_109

Cadmus_110 — tRNA
(tRNA-Ser(gga))

Cadmus_111

Cadmus_112 — tRNA
(tRNA-Ser(tga))

Cadmus_113

Cadmus_114

Cadmus_115

Cadmus_116
(purple acid phosphatase)

Cadmus_117

Cadmus_118 — tRNA
(tRNA-Asp(gtc))

Cadmus_119 — tRNA
(tRNA-Asp(gtc))

Cadmus_120

Cadmus_121

Cadmus_122
(Ro-like RNA binding protein)

Cadmus_123

Cadmus_124

Cadmus_125

Cadmus_126

Cadmus_127

Cadmus_128

Cadmus_129 — tRNA
(tRNA-Glu(ctc))

Cadmus_130

Cadmus_131 — tRNA
(tRNA-Glu(ttc))

Cadmus_132

Cadmus_133 — tRNA
(tRNA-Val(tac))

Cadmus_134 — tRNA
(tRNA-Leu(tag))

Cadmus_135 — tRNA
(tRNA-Leu(tag))

Cadmus_136 — tRNA
(tRNA-Gly(gcc))

Cadmus_137

Cadmus_138

Cadmus_139

Cadmus_140

Cadmus_141 — tRNA
(tRNA-Ala(tgc))

Cadmus_142 — tRNA
(tRNA-Lys(ctt))

Cadmus_143
(peptidase)

Cadmus_144

Cadmus_145 — tRNA
(tRNA-Asn(gtt))

Cadmus_146

Cadmus_147 — tRNA
(tRNA-Asn(gtt))

Cadmus_148

Cadmus_149

Cadmus_150

Cadmus_151 — tRNA
(tRNA-Arg(cct))

Cadmus_152

Cadmus_153

Cadmus_154 — tRNA
(tRNA-Ala(ggc))

Cadmus_155 — tRNA
(tRNA-Lys(ctt))

Cadmus_156 — tRNA
(tRNA-Lys(ttt))

Cadmus_157

Cadmus_158 — tRNA
(tRNA-Arg(tcg))

Cadmus_159

Cadmus_160

Cadmus_161 — tRNA
(tRNA-Met(cat))

Cadmus_162 — tRNA
(tRNA-Met(cat))

Cadmus_163

Cadmus_164

Cadmus_165 — tRNA
(tRNA-His(gtg))

Cadmus_166 — tRNA
(tRNA-Phe(gaa))

Cadmus_167

Cadmus_168

Cadmus_169 — tRNA
(tRNA-Cys(gca))

Cadmus_170 — tRNA
(tRNA-Thr(tgt))

Cadmus_171 — tRNA
(tRNA-Thr(ggt))

Cadmus_172

Cadmus_173 — tRNA
(tRNA-Arg(acg))

Cadmus_174

Cadmus_175
(DnaQ-like (DNA polymerase III subunit))

Cadmus_176 — tmRNA
(Tag peptide: ANSNVAFALAA*)

Cadmus_177

Cadmus_178
(peptidase)

Cadmus_179

Cadmus_180

Cadmus_181
(HNH endonuclease)

Cadmus_182

Cadmus_183
(acetyltransferase)

Cadmus_184

Cadmus_185

Cadmus_186

Cadmus_187

Cadmus_188

Cadmus_189

Cadmus_190
(RNA ligase)

Cadmus_191

Cadmus_192

Cadmus_193
(polynucleotide kinase)

Cadmus_194
(HNH endonuclease)

Cadmus_195

Cadmus_196

Cadmus_197 — tRNA
(tRNA-Leu(gag))

Cadmus_198

Cadmus_199

Cadmus_200

Cadmus_201 — tRNA
(tRNA-Val(gac))

Cadmus_202

Cadmus_203

Cadmus_204 — tRNA
(tRNA-Leu(caa))

Cadmus_205

Cadmus_206 — tRNA
(tRNA-Ser(gct))

Cadmus_207

Cadmus_208

Cadmus_209

Cadmus_210

Cadmus_211

Cadmus_212

Cadmus_213

Cadmus_214
(deoxycytidylate deaminase)

Cadmus_215
(rIIA-like protein)

Cadmus_216
(rIIB-like protein)

Cadmus_217
(metallophosphatase)

Cadmus_218

Cadmus_219

Cadmus_220
(HNH endonuclease)

Cadmus_221
(WhiB family transcription factor)

Cadmus_222

Cadmus_223

Cadmus_224

Cadmus_225

Cadmus_226

Cadmus_227

Cadmus_228

Cadmus_229

Cadmus_230 — tRNA
(tRNA-Gln(ttg))

Cadmus_231

Cadmus_232

Cadmus_233

Cadmus_234

Cadmus_235

Cadmus_236

Cadmus_237

Cadmus_238
(thioredoxin)

Cadmus_239

Cadmus_240

Cadmus_241

Cadmus_242

Cadmus_243

Cadmus_244

Cadmus_245

Cadmus_246

Cadmus_247

Cadmus_248

Cadmus_249

Cadmus_250

Cadmus_251

Cadmus_252

Cadmus_253

Cadmus_254

Cadmus_255
(Lsr2-like DNA bridging protein)

Cadmus_256

Cadmus_257

Cadmus_258
(ParB N-terminal-like domain)

Cadmus_259
(ParB N-terminal-like domain)

Cadmus_260

Cadmus_261

Cadmus_262

Cadmus_263

Cadmus_264

Cadmus_265

Cadmus_266

Cadmus_267

Cadmus_268

Cadmus_269
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload