Streptomyces phage Amabiko
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Detailed Information for Phage Amabiko
Discovery Information
Isolation HostStreptomyces scabiei RL-34
Found ByKirsten Tran & Heba Bakry
Year Found2022
Location FoundBaltimore, MD United States
Finding InstitutionUniversity of Maryland, Baltimore County
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates39.25623 N, 76.71286 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 24, 2023
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage238
Genome length (bp)131414
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length12588 bp
GC Content49.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBE
SubclusterBE2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionArizona State University
Annotation StatusIn GenBank
Plaque Notes~2 mm, clear, symmetrical and circular after 24 hours at 30C on S. scabiei on NA+
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Amabiko_1

Amabiko_2

Amabiko_3

Amabiko_4

Amabiko_5

Amabiko_6

Amabiko_7
(Lsr2-like DNA binding protein)

Amabiko_8

Amabiko_9

Amabiko_10

Amabiko_11

Amabiko_12

Amabiko_13
(ParB-like nuclease domain)

Amabiko_14

Amabiko_15

Amabiko_16

Amabiko_17

Amabiko_18

Amabiko_19

Amabiko_20

Amabiko_21

Amabiko_22

Amabiko_23

Amabiko_24

Amabiko_25

Amabiko_26

Amabiko_27
(HNH endonuclease)

Amabiko_28

Amabiko_29

Amabiko_30
(ThyX-like thymidylate synthase)

Amabiko_31

Amabiko_32

Amabiko_33

Amabiko_34

Amabiko_35

Amabiko_36

Amabiko_37

Amabiko_38

Amabiko_40
(HNH endonuclease)

Amabiko_41
(endolysin)

Amabiko_42

Amabiko_43

Amabiko_44
(glycosyltransferase)

Amabiko_45
(ribonucleotide reductase)

Amabiko_46
(LysM-like peptidoglycan binding protein)

Amabiko_47

Amabiko_48

Amabiko_49
(portal protein)

Amabiko_50

Amabiko_51
(capsid maturation protease)

Amabiko_52
(major capsid protein)

Amabiko_53

Amabiko_54
(head-to-tail adaptor)

Amabiko_55

Amabiko_56

Amabiko_57

Amabiko_58
(major tail protein)

Amabiko_59

Amabiko_60

Amabiko_61
(tape measure protein)

Amabiko_62
(minor tail protein)

Amabiko_63
(minor tail protein)

Amabiko_64
(minor tail protein)

Amabiko_65
(minor tail protein)

Amabiko_66
(minor tail protein)

Amabiko_67

Amabiko_68

Amabiko_69

Amabiko_70
(HNH endonuclease)

Amabiko_71

Amabiko_72
(holin)

Amabiko_73

Amabiko_74

Amabiko_75

Amabiko_76

Amabiko_77

Amabiko_78
(DNA helicase)

Amabiko_79

Amabiko_80
(DNA primase)

Amabiko_81
(DNA binding protein)

Amabiko_82
(DnaE-like DNA polymerase III (alpha))

Amabiko_83

Amabiko_84
(MazG-like nucleotide pyrophosphohydrolase)

Amabiko_85
(RecA-like DNA recombinase)

Amabiko_86

Amabiko_87
(Holliday junction resolvase)

Amabiko_88

Amabiko_89

Amabiko_90

Amabiko_91
(Cas4 exonuclease)

Amabiko_92

Amabiko_93
(RuvC-like resolvase)

Amabiko_94
(DprA-like ssDNA binding protein)

Amabiko_95
(helix-turn-helix DNA binding protein)

Amabiko_96
(methyltransferase)

Amabiko_97
(thymidylate kinase)

Amabiko_98

Amabiko_99
(helix-turn-helix DNA binding protein)

Amabiko_100
(terminase)

Amabiko_101
(HNH endonuclease)

Amabiko_102

Amabiko_106

Amabiko_107

Amabiko_110
(tRNA nucleotidyltransferase)

Amabiko_111
(FtsK-like DNA translocase)

Amabiko_112

Amabiko_114

Amabiko_116

Amabiko_117

Amabiko_119

Amabiko_121

Amabiko_122

Amabiko_123

Amabiko_124

Amabiko_125

Amabiko_127

Amabiko_128

Amabiko_130

Amabiko_131
(Ro-like RNA binding protein)

Amabiko_132

Amabiko_133

Amabiko_134

Amabiko_135

Amabiko_136
(DNA binding protein)

Amabiko_137

Amabiko_138

Amabiko_139

Amabiko_140

Amabiko_141

Amabiko_143

Amabiko_151

Amabiko_152

Amabiko_153

Amabiko_156
(peptidase)

Amabiko_157

Amabiko_159

Amabiko_160

Amabiko_161

Amabiko_163

Amabiko_164

Amabiko_165

Amabiko_167

Amabiko_169

Amabiko_172

Amabiko_174

Amabiko_176

Amabiko_179

Amabiko_180

Amabiko_184

Amabiko_185

Amabiko_186

Amabiko_190

Amabiko_192

Amabiko_193

Amabiko_194
(DnaQ-like DNA polymerase III subunit)

Amabiko_195

Amabiko_197

Amabiko_198

Amabiko_199
(acetyltransferase)

Amabiko_200

Amabiko_201

Amabiko_203

Amabiko_204

Amabiko_205

Amabiko_206

Amabiko_207

Amabiko_208
(RNA ligase)

Amabiko_209

Amabiko_210

Amabiko_211

Amabiko_212
(polynucleotide kinase)

Amabiko_213

Amabiko_214

Amabiko_215

Amabiko_217

Amabiko_218

Amabiko_220
(SprT-like protease)

Amabiko_221

Amabiko_222

Amabiko_223

Amabiko_225

Amabiko_227

Amabiko_228

Amabiko_229

Amabiko_230

Amabiko_231

Amabiko_232

Amabiko_233

Amabiko_234

Amabiko_235
(deoxycytidylate deaminase)

Amabiko_236
(phosphoesterase)

Amabiko_237

Amabiko_238

Amabiko_239
(WhiB family transcription factor)

Amabiko_240

Amabiko_241

Amabiko_242

Amabiko_243

Amabiko_244

Amabiko_245

Amabiko_246

Amabiko_247

Amabiko_248

Amabiko_250

Amabiko_251

Amabiko_252

Amabiko_253

Amabiko_254

Amabiko_255

Amabiko_256
(thioredoxin)

Amabiko_257

Amabiko_258

Amabiko_259

Amabiko_260

Amabiko_261

Amabiko_262

Amabiko_263

Amabiko_264

Amabiko_265

Amabiko_266

Amabiko_267

Amabiko_268

Amabiko_269

Amabiko_270

Amabiko_271
(Lsr2-like DNA bridging protein)

Amabiko_272

Amabiko_273

Amabiko_274

Amabiko_275

Amabiko_276

Amabiko_277
(ParB-like nuclease domain)

Amabiko_278

Amabiko_279

Amabiko_280

Amabiko_281

Amabiko_282

Amabiko_283

Amabiko_284

Amabiko_285

Amabiko_286

Amabiko_287

Amabiko_288

Amabiko_289

Amabiko_290

Amabiko_291
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP358748
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 151
Pitt Freezer Box Grid# A4
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload